Chromosome view [ZYRO]

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Annotated sequences: The most recent files are available on the Download page.

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detailed view of Zygosaccharomyces rouxii Zyro0A: Zyro0A Overview:1..50000 Zyro0A: Zyro0A Overview:50001..100000 Zyro0A: Zyro0A Overview:100001..150000 Zyro0A: Zyro0A Overview:150001..200000 Zyro0A: Zyro0A Overview:200001..250000 Zyro0A: Zyro0A Overview:250001..300000 Zyro0A: Zyro0A Overview:300001..350000 Zyro0A: Zyro0A Overview:350001..400000 Zyro0A: Zyro0A Overview:400001..450000 Zyro0A: Zyro0A Overview:450001..500000 Zyro0A: Zyro0A Overview:500001..550000 Zyro0A: Zyro0A Overview:550001..600000 Zyro0A: Zyro0A Overview:600001..650000 Zyro0A: Zyro0A Overview:650001..700000 Zyro0A: Zyro0A Overview:700001..750000 Zyro0A: Zyro0A Overview:750001..800000 Zyro0A: Zyro0A Overview:800001..850000 Zyro0A: Zyro0A Overview:850001..900000 Zyro0A: Zyro0A Overview:900001..950000 Zyro0A: Zyro0A Overview:950001..1000000 Zyro0A: Zyro0A Overview:1000001..1050000 Zyro0A: Zyro0A Overview:1050001..1100000 Zyro0A: Zyro0A Overview:1100001..1150000 Zyro0B: Zyro0B Overview:1..50000 Zyro0B: Zyro0B Overview:50001..100000 Zyro0B: Zyro0B Overview:100001..150000 Zyro0B: Zyro0B Overview:150001..200000 Zyro0B: Zyro0B Overview:200001..250000 Zyro0B: Zyro0B Overview:250001..300000 Zyro0B: Zyro0B Overview:300001..350000 Zyro0B: Zyro0B Overview:350001..400000 Zyro0B: Zyro0B Overview:400001..450000 Zyro0B: Zyro0B Overview:450001..500000 Zyro0B: Zyro0B Overview:500001..550000 Zyro0B: Zyro0B Overview:550001..600000 Zyro0B: Zyro0B Overview:600001..650000 Zyro0B: Zyro0B Overview:650001..700000 Zyro0B: Zyro0B Overview:700001..750000 Zyro0B: Zyro0B Overview:750001..800000 Zyro0B: Zyro0B Overview:800001..850000 Zyro0B: Zyro0B Overview:850001..900000 Zyro0B: Zyro0B Overview:900001..950000 Zyro0B: Zyro0B Overview:950001..1000000 Zyro0B: Zyro0B Overview:1000001..1050000 Zyro0B: Zyro0B Overview:1050001..1100000 Zyro0B: Zyro0B Overview:1100001..1150000 Zyro0B: Zyro0B Overview:1150001..1200000 Zyro0B: Zyro0B Overview:1200001..1250000 Zyro0B: Zyro0B Overview:1250001..1300000 Zyro0B: Zyro0B 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Overview:900001..950000 Zyro0D: Zyro0D Overview:950001..1000000 Zyro0D: Zyro0D Overview:1000001..1050000 Zyro0D: Zyro0D Overview:1050001..1100000 Zyro0D: Zyro0D Overview:1100001..1150000 Zyro0D: Zyro0D Overview:1150001..1200000 Zyro0D: Zyro0D Overview:1200001..1250000 Zyro0D: Zyro0D Overview:1250001..1300000 Zyro0D: Zyro0D Overview:1300001..1350000 Zyro0D: Zyro0D Overview:1350001..1400000 Zyro0D: Zyro0D Overview:1400001..1450000 Zyro0D: Zyro0D Overview:1450001..1500000 Zyro0E: Zyro0E Overview:1..50000 Zyro0E: Zyro0E Overview:50001..100000 Zyro0E: Zyro0E Overview:100001..150000 Zyro0E: Zyro0E Overview:150001..200000 Zyro0E: Zyro0E Overview:200001..250000 Zyro0E: Zyro0E Overview:250001..300000 Zyro0E: Zyro0E Overview:300001..350000 Zyro0E: Zyro0E Overview:350001..400000 Zyro0E: Zyro0E Overview:400001..450000 Zyro0E: Zyro0E Overview:450001..500000 Zyro0E: Zyro0E Overview:500001..550000 Zyro0E: Zyro0E Overview:550001..600000 Zyro0E: Zyro0E Overview:600001..650000 Zyro0E: Zyro0E 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Zyro0F: Zyro0F Overview:1050001..1100000 Zyro0F: Zyro0F Overview:1100001..1150000 Zyro0F: Zyro0F Overview:1150001..1200000 Zyro0F: Zyro0F Overview:1200001..1250000 Zyro0F: Zyro0F Overview:1250001..1300000 Zyro0F: Zyro0F Overview:1300001..1350000 Zyro0F: Zyro0F Overview:1350001..1400000 Zyro0F: Zyro0F Overview:1400001..1450000 Zyro0F: Zyro0F Overview:1450001..1500000 Zyro0F: Zyro0F Overview:1500001..1550000 Zyro0F: Zyro0F Overview:1550001..1600000 Zyro0G: Zyro0G Overview:1..50000 Zyro0G: Zyro0G Overview:50001..100000 Zyro0G: Zyro0G Overview:100001..150000 Zyro0G: Zyro0G Overview:150001..200000 Zyro0G: Zyro0G Overview:200001..250000 Zyro0G: Zyro0G Overview:250001..300000 Zyro0G: Zyro0G Overview:300001..350000 Zyro0G: Zyro0G Overview:350001..400000 Zyro0G: Zyro0G Overview:400001..450000 Zyro0G: Zyro0G Overview:450001..500000 Zyro0G: Zyro0G Overview:500001..550000 Zyro0G: Zyro0G Overview:550001..600000 Zyro0G: Zyro0G Overview:600001..650000 Zyro0G: Zyro0G Overview:650001..700000 Zyro0G: Zyro0G Overview:700001..750000 Zyro0G: Zyro0G Overview:750001..800000 Zyro0G: Zyro0G Overview:800001..850000 Zyro0G: Zyro0G Overview:850001..900000 Zyro0G: Zyro0G Overview:900001..950000 Zyro0G: Zyro0G Overview:950001..1000000 Zyro0G: Zyro0G Overview:1000001..1050000 Zyro0G: Zyro0G Overview:1050001..1100000 Zyro0G: Zyro0G Overview:1100001..1150000 Zyro0G: Zyro0G Overview:1150001..1200000 Zyro0G: Zyro0G Overview:1200001..1250000 Zyro0G: Zyro0G Overview:1250001..1300000 Zyro0G: Zyro0G Overview:1300001..1350000 Zyro0G: Zyro0G Overview:1350001..1400000 Zyro0G: Zyro0G Overview:1400001..1450000 Zyro0G: Zyro0G Overview:1450001..1500000 Zyro0G: Zyro0G Overview:1500001..1550000 Zyro0G: Zyro0G Overview:1550001..1600000 Zyro0G: Zyro0G Overview:1600001..1650000 Zyro0G: Zyro0G Overview:1650001..1700000 Zyro0G: Zyro0G Overview:1700001..1750000 Zyro0G: Zyro0G Overview:1750001..1800000 Zyro0G: Zyro0G Overview:1800001..1850000 Zyro0G: Zyro0G Overview:1850001..1900000

General information, lifestyle, ecological niche  

Zygosaccharomyces rouxii is an haploid yeast belonging to the hemiascomycetous yeast phylum and first described as Saccharomyces rouxii. This hemiascomycete is one of the most osmotolerant and halotolerant yeasts since it is able to grow in high concentrations of salts and/or sugar [1];[3]. Salt tolerance and assimilation of glycerol is strain dependent [4]. Z. rouxii is employed in fermentation processes – e.g. soy sauce, balsamic vinegar, etc. [7]- but it is also one of the main spoilage microorganisms in food industry. Fruit juices and concentrates, jam and salad dressing are among the products commonly spoiled by this species .

Highlights of genetic and genomic results  

The genome of the sequenced strain Z. rouxii CBS732 consists of seven chromosomes ranging from 1.1Mb to 1.8Mb with a total size of 10.4Mb without the rDNA, organised in a single locus. There are approximatively 4998 protein encoding genes and 272 tRNA genes. In addition, a natural plasmid has been described : pSR1 is a 6.2kb replicative plasmid containing 3 ORFs [8].
Centromeric and episomal Z. rouxii/Escherichia coli shuttle plasmids with different marker genes (ScURA3, ZrLEU2, ZrADE2), and homology-driven gene deletion systems make genetic engineering possible in this species [5];[6].

References  

  1. Barnett, J., R. Payne and D. Yarrow, 1990 Yeasts, characteristics and Identification. Cambridge University Press, Cambridge & New York.
  2. Combina, M., C. Daguerre, A. Massera, L. Mercado, M. E. Sturm et al., 2008 Yeast identification in grape juice concentrates from Argentina. Lett Appl Microbiol 46:192-197.
  3. Jansen, M., J. H. Veurink, G. J. Euverink and L. Dijkhuizen, 2003 Growth of the salt-tolerant yeast Zygosaccharomyces rouxii in microtiter plates: effects of NaCl, pH and temperature on growth and fusel alcohol production from branched-chain amino acids. FEMS Yeast Res 3: 313-318.
  4. Pribylova, L., V. Farkas, I. Slaninova, J. De Montigny and H. Sychrova, 2007 Differences in osmotolerant and cell-wall properties of two Zygosaccharomyces rouxii strains. Folia Microbiol (Praha) 52:241-245.
  5. Pribylova, L., J. De Montigny and H. Sychrova, 2007 Tools for the genetic manipulation of Zygosaccharomyces rouxii. FEMS Yeast Res 7:1285-1294.
  6. Pribylova, L., M. L. Straub, H. Sychrova and J. De Montigny, 2007 Characterisation of Zygosaccharomyces rouxii centromeres and construction of first Z. rouxii centromeric vectors. Chromosome Res 15:439-445.
  7. Solieri, L., and P. Giudici, 2007 Yeasts associated to Traditional Balsamic Vinegar: Ecological and technological features. Int J Food Microbiol.
  8. Araki, H., Jearnpipatkul, A., Tatsumi, H., Sakurai, T., Ushio, K., Muta, T. and Y. Oshima, 1985 Molecular and functional organization of yeast plasmid pSR1. J. Mol. Biol. 182:191-203.