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Paralogous series of species-specific genes
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Fam. size |
Protein family |
CDS |
Short description |
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Z.
rouxii |
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2 |
GL3C3673 |
ZYRO0C10120g |
no similarity |
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ZYRO0F02728g |
some similarities with SACE YIR019C MUC1
GPI-anchored cell surface glycoprotein |
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2 |
GL3C3937 |
ZYRO0E10428g |
similar to SACE YDR539W |
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ZYRO0G00198g |
some similarities with SACE YDR539W |
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2 |
GL3C4506 |
ZYRO0D16918g |
no similarity |
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ZYRO0F11132g |
no similarity |
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2 |
GL3R4028 (1) |
ZYRO0E10340g |
highly similar to Aspergillus oryzae
AO090012000349 Choline dehydrogenase and related flavoproteins |
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ZYRO0F18634g |
highly similar to Aspergillus oryzae
AO090012000349 Choline dehydrogenase and related flavoproteins |
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2 |
GL3R4324 (1) |
ZYRO0A13552g |
similar to Aspergillus oryzae AO090005000547
Predicted protein |
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ZYRO0G22572g |
similar to Aspergillus oryzae AO090005000547
Predicted protein |
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3 |
GL3C3802 |
ZYRO0C01100g |
some similarities with SACE YML111W BUL2
Component of the Rsp5p E3- ubiquitin ligase complex |
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ZYRO0C05874g |
some similarities with SACE YML111W BUL2
Component of the Rsp5p E3- ubiquitin ligase complex |
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ZYRO0C05896g |
some similarities with SACE YML111W BUL2
Component of the Rsp5p E3- ubiquitin ligase complex |
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3 |
GL3C4103 |
ZYRO0C18326g |
some similarities with SACE YPR065W |
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ZYRO0F15796g |
no similarity |
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ZYRO0F18546g |
no similarity |
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5 |
GL3C3825 |
ZYRO0A10868g |
no similarity |
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ZYRO0D09658g |
no similarity |
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ZYRO0E04774g |
no similarity |
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ZYRO0G10230g |
no similarity |
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ZYRO0G10692g |
no similarity |
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10 |
GL3R0925 |
ZYRO0A00154g |
no similarity |
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ZYRO0A00264g |
no similarity |
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ZYRO0A11374g |
no similarity |
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ZYRO0A13838g |
no similarity |
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ZYRO0A13904g |
no similarity |
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ZYRO0B00132g |
no similarity |
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ZYRO0C00220g |
no similarity |
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ZYRO0E00308g |
no similarity |
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ZYRO0F05434g |
no similarity |
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ZYRO0G00154g |
no similarity |
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20 |
GL3R0233 |
ZYRO0A00132g |
some similarities with SACE YKL219W COS9 |
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ZYRO0A00198g |
some similarities with SACE YJR161C COS5 |
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ZYRO0A00242g |
some similarities with SACE YHL044W Putative
integral membrane protein, member of DUP240 gene family |
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ZYRO0A11198g |
no similarity |
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ZYRO0A11242g |
no similarity |
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ZYRO0A11286g |
no similarity |
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ZYRO0A11308g |
no similarity |
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ZYRO0A11352g |
no similarity |
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ZYRO0A13860g |
no similarity |
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ZYRO0A13926g |
no similarity |
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ZYRO0B00110g |
no similarity |
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ZYRO0B17006g |
weakly similar to SACE YGL051W MST27 and YAR033W
MST28 Putative integral membrane proteins, involved in vesicle formation;
member of DUP240 gene family |
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ZYRO0C00198g |
some similarities with SACE YKL219W COS9 |
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ZYRO0D00176g |
no similarity |
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ZYRO0D00220g |
no similarity |
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ZYRO0D00264g |
no similarity |
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ZYRO0E00286g |
no similarity |
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ZYRO0F05368g |
no similarity |
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ZYRO0F05412g |
some similarities with SACE YHL048W COS8 |
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ZYRO0G00132g |
some similarities with SACE YKL219W COS9 |
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K.
thermotolerans |
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2 |
GL3C4023 |
KLTH0F00110g |
conserved hypothetical protein |
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KLTH0F19954g |
conserved hypothetical protein |
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2 |
GL3C4283 |
KLTH0B05060g |
conserved hypothetical protein |
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KLTH0E14938g |
conserved hypothetical protein |
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2 |
GL3R3968 |
KLTH0B10164g |
conserved hypothetical protein |
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KLTH0E00286g |
conserved hypothetical protein |
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2 |
GL3R3973 |
KLTH0A00462g |
some similarities with SACE YDR400W URH1 uridine
nucleosidase (uridine ribohydrolase) |
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KLTH0E00154g |
conserved hypothetical protein |
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2 |
GL3R4294 |
KLTH0F00132g |
conserved hypothetical protein |
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KLTH0F19932g |
conserved hypothetical protein |
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4 |
GL3R3887 |
KLTH0C07700g |
conserved hypothetical protein |
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KLTH0C07722g |
conserved hypothetical protein |
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KLTH0F12276g |
conserved hypothetical protein |
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KLTH0H12914g |
conserved hypothetical protein |
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5 |
GL3C0059 |
KLTH0B10318g |
no similarity |
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KLTH0B10428g |
no similarity |
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KLTH0D00132g |
no similarity |
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KLTH0G00132g |
no similarity |
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KLTH0G00396g |
conserved hypothetical protein |
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5 |
GL3R3664 |
KLTH0A07810g |
highly similar to SACE YJL213W |
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KLTH0B00264g |
highly similar to SACE YJL213W |
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KLTH0C11968g |
highly similar to SACE YJL213W |
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KLTH0E16874g |
highly similar to SACE YJL213W |
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KLTH0H00132g |
highly similar to SACE YJL213W |
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S.
kluyveri |
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2 |
GL3C3704 |
SAKL0E01848g |
no similarity |
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SAKL0H17578g |
no similarity |
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2 |
GL3R4319 |
SAKL0F09944g |
no similarity |
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SAKL0H01408g |
no similarity |
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3 |
GL3C0410 |
SAKL0E05324g |
weakly similar to Candida glabrata CAGL0B02926g |
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SAKL0E05346g |
weakly similar to Candida glabrata CAGL0B02926g |
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SAKL0H24090g |
weakly similar to Candida glabrata CAGL0D00286g |
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3 |
GL3C4061 |
SAKL0A10582g |
conserved hypothetical protein |
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SAKL0A10648g |
some similarities with SACE YPR015C |
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SAKL0D15136g |
some similarities with SACE YPR015C |
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3 |
GL3R4027 (1) |
SAKL0B00110g |
no similarity |
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SAKL0C14080g |
no similarity |
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SAKL0E00110g |
some similarities with Xylella fastidiosa XF_0626
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4 |
GL3C3889 |
SAKL0C03872g |
no similarity |
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SAKL0C03916g |
no similarity |
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SAKL0C10648g |
weakly similar to SACE YPR065W Heme-dependent
repressor of hypoxic genes |
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SAKL0D09922g |
conserved hypothetical protein |
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6 |
GL3R3665 (1) |
SAKL0B01782g |
similar to Yellowstone A-Prime CYA_2439 ISSoc2
resolvase |
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SAKL0B05940g |
similar to
Caldicellulosiruptor saccharolyticus DSM 8903 CsacDRAFT_1700
Regulatory protein MerR |
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SAKL0G04686g |
similar to Caldicellulosiruptor saccharolyticus
DSM 8903 CsacDRAFT_1700 Regulatory protein MerR |
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SAKL0H03674g |
weakly similar to Yellowstone A- Prime CYA_2425
ISSoc2 resolvase |
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SAKL0H06314g |
similar to Yellowstone A-Prime CYA_2425 ISSoc2
resolvase |
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SAKL0H06600g |
similar to Synechococcus sp. (strain JA-3-3Ab)
(Cyanobacteria bacterium Yellowstone A-Prime) ISSoc2 resolvase |
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K.
lactis |
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2 |
GL3C4579 |
KLLA0A11957g |
conserved hypothetical protein |
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KLLA0C19063g |
conserved hypothetical protein |
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2 |
GL3R4112 |
KLLA0D06193g |
conserved hypothetical protein |
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KLLA0E04599g |
no similarity |
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3 |
GL3C3955 |
KLLA0B14531g |
conserved hypothetical protein |
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KLLA0C00330g |
conserved hypothetical protein |
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KLLA0C03113g |
Kluyveromyces lactis KLLA0C03113g Sla2 protein |
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3 |
GL3R4104 |
KLLA0A12001g |
no similarity |
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KLLA0B00220g |
conserved hypothetical protein |
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KLLA0D00209g |
conserved hypothetical protein |
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7 |
GL3C3543 |
KLLA0A00143g |
conserved hypothetical protein |
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KLLA0B00166g |
conserved hypothetical protein |
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KLLA0C00154g |
conserved hypothetical protein |
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KLLA0D00157g |
conserved hypothetical protein |
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KLLA0D19987g |
conserved hypothetical protein |
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KLLA0E00155g |
no similarity |
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KLLA0F00176g |
no similarity |
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7 |
GL3R3212 |
KLLA0A00154g |
conserved hypothetical protein |
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KLLA0B00187g |
conserved hypothetical protein |
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KLLA0C00176g |
no similarity |
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KLLA0D00187g |
no similarity |
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KLLA0D19965g |
conserved hypothetical protein |
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KLLA0E00177g |
no similarity |
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KLLA0F00220g |
no similarity |
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A.
gossypii |
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2 |
GL3C4268 |
ERGO0D00110g |
no similarity |
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ERGO0G00132g |
no similarity |
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3 |
GL3R3997 |
ERGO0D00308g |
no similarity |
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ERGO0E18722g |
no similarity |
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ERGO0F20900g |
no similarity |
The table indicates the series of dispersed paralogs specific to one of the protoploid yeasts with no clearcut homolog in the other species. (1) putative cases of lateral gene transfers that will be published elsewhere (Rolland et al. submitted).
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URL: http://www.genolevures.org/protoploid/Protoploid_paralog_species.html