Chromosome view [KLLA]

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Annotated sequences: The most recent files are available on the Download page.

Browse chromosome features: Click on a 50 kbp segment.

detailed view of Kluyveromyces lactis Klla0A: Klla0A Overview:1..50000 Klla0A: Klla0A Overview:50001..100000 Klla0A: Klla0A Overview:100001..150000 Klla0A: Klla0A Overview:150001..200000 Klla0A: Klla0A Overview:200001..250000 Klla0A: Klla0A Overview:250001..300000 Klla0A: Klla0A Overview:300001..350000 Klla0A: Klla0A Overview:350001..400000 Klla0A: Klla0A Overview:400001..450000 Klla0A: Klla0A Overview:450001..500000 Klla0A: Klla0A Overview:500001..550000 Klla0A: Klla0A Overview:550001..600000 Klla0A: Klla0A Overview:600001..650000 Klla0A: Klla0A Overview:650001..700000 Klla0A: Klla0A Overview:700001..750000 Klla0A: Klla0A Overview:750001..800000 Klla0A: Klla0A Overview:800001..850000 Klla0A: Klla0A Overview:850001..900000 Klla0A: Klla0A Overview:900001..950000 Klla0A: Klla0A Overview:950001..1000000 Klla0A: Klla0A Overview:1000001..1050000 Klla0A: Klla0A Overview:1050001..1100000 Klla0B: Klla0B Overview:1..50000 Klla0B: Klla0B Overview:50001..100000 Klla0B: Klla0B Overview:100001..150000 Klla0B: Klla0B Overview:150001..200000 Klla0B: Klla0B Overview:200001..250000 Klla0B: Klla0B Overview:250001..300000 Klla0B: Klla0B Overview:300001..350000 Klla0B: Klla0B Overview:350001..400000 Klla0B: Klla0B Overview:400001..450000 Klla0B: Klla0B Overview:450001..500000 Klla0B: Klla0B Overview:500001..550000 Klla0B: Klla0B Overview:550001..600000 Klla0B: Klla0B Overview:600001..650000 Klla0B: Klla0B Overview:650001..700000 Klla0B: Klla0B Overview:700001..750000 Klla0B: Klla0B Overview:750001..800000 Klla0B: Klla0B Overview:800001..850000 Klla0B: Klla0B Overview:850001..900000 Klla0B: Klla0B Overview:900001..950000 Klla0B: Klla0B Overview:950001..1000000 Klla0B: Klla0B Overview:1000001..1050000 Klla0B: Klla0B Overview:1050001..1100000 Klla0B: Klla0B Overview:1100001..1150000 Klla0B: Klla0B Overview:1150001..1200000 Klla0B: Klla0B Overview:1200001..1250000 Klla0B: Klla0B Overview:1250001..1300000 Klla0B: Klla0B Overview:1300001..1350000 Klla0C: Klla0C Overview:1..50000 Klla0C: Klla0C Overview:50001..100000 Klla0C: Klla0C Overview:100001..150000 Klla0C: Klla0C Overview:150001..200000 Klla0C: Klla0C Overview:200001..250000 Klla0C: Klla0C Overview:250001..300000 Klla0C: Klla0C Overview:300001..350000 Klla0C: Klla0C Overview:350001..400000 Klla0C: Klla0C Overview:400001..450000 Klla0C: Klla0C Overview:450001..500000 Klla0C: Klla0C Overview:500001..550000 Klla0C: Klla0C Overview:550001..600000 Klla0C: Klla0C Overview:600001..650000 Klla0C: Klla0C Overview:650001..700000 Klla0C: Klla0C Overview:700001..750000 Klla0C: Klla0C Overview:750001..800000 Klla0C: Klla0C Overview:800001..850000 Klla0C: Klla0C Overview:850001..900000 Klla0C: Klla0C Overview:900001..950000 Klla0C: Klla0C Overview:950001..1000000 Klla0C: Klla0C Overview:1000001..1050000 Klla0C: Klla0C Overview:1050001..1100000 Klla0C: Klla0C Overview:1100001..1150000 Klla0C: Klla0C Overview:1150001..1200000 Klla0C: Klla0C Overview:1200001..1250000 Klla0C: Klla0C Overview:1250001..1300000 Klla0C: Klla0C Overview:1300001..1350000 Klla0C: Klla0C Overview:1350001..1400000 Klla0C: Klla0C Overview:1400001..1450000 Klla0C: Klla0C Overview:1450001..1500000 Klla0C: Klla0C Overview:1500001..1550000 Klla0C: Klla0C Overview:1550001..1600000 Klla0C: Klla0C Overview:1600001..1650000 Klla0C: Klla0C Overview:1650001..1700000 Klla0C: Klla0C Overview:1700001..1750000 Klla0C: Klla0C Overview:1750001..1800000 Klla0D: Klla0D Overview:1..50000 Klla0D: Klla0D Overview:50001..100000 Klla0D: Klla0D Overview:100001..150000 Klla0D: Klla0D Overview:150001..200000 Klla0D: Klla0D Overview:200001..250000 Klla0D: Klla0D Overview:250001..300000 Klla0D: Klla0D Overview:300001..350000 Klla0D: Klla0D Overview:350001..400000 Klla0D: Klla0D Overview:400001..450000 Klla0D: Klla0D Overview:450001..500000 Klla0D: Klla0D Overview:500001..550000 Klla0D: Klla0D Overview:550001..600000 Klla0D: Klla0D Overview:600001..650000 Klla0D: Klla0D Overview:650001..700000 Klla0D: Klla0D Overview:700001..750000 Klla0D: Klla0D Overview:750001..800000 Klla0D: Klla0D Overview:800001..850000 Klla0D: Klla0D Overview:850001..900000 Klla0D: Klla0D Overview:900001..950000 Klla0D: Klla0D Overview:950001..1000000 Klla0D: Klla0D Overview:1000001..1050000 Klla0D: Klla0D Overview:1050001..1100000 Klla0D: Klla0D Overview:1100001..1150000 Klla0D: Klla0D Overview:1150001..1200000 Klla0D: Klla0D Overview:1200001..1250000 Klla0D: Klla0D Overview:1250001..1300000 Klla0D: Klla0D Overview:1300001..1350000 Klla0D: Klla0D Overview:1350001..1400000 Klla0D: Klla0D Overview:1400001..1450000 Klla0D: Klla0D Overview:1450001..1500000 Klla0D: Klla0D Overview:1500001..1550000 Klla0D: Klla0D Overview:1550001..1600000 Klla0D: Klla0D Overview:1600001..1650000 Klla0D: Klla0D Overview:1650001..1700000 Klla0D: Klla0D Overview:1700001..1750000 Klla0E: Klla0E Overview:1..50000 Klla0E: Klla0E Overview:50001..100000 Klla0E: Klla0E Overview:100001..150000 Klla0E: Klla0E Overview:150001..200000 Klla0E: Klla0E Overview:200001..250000 Klla0E: Klla0E Overview:250001..300000 Klla0E: Klla0E Overview:300001..350000 Klla0E: Klla0E Overview:350001..400000 Klla0E: Klla0E Overview:400001..450000 Klla0E: Klla0E Overview:450001..500000 Klla0E: Klla0E Overview:500001..550000 Klla0E: Klla0E Overview:550001..600000 Klla0E: Klla0E Overview:600001..650000 Klla0E: Klla0E Overview:650001..700000 Klla0E: Klla0E Overview:700001..750000 Klla0E: Klla0E Overview:750001..800000 Klla0E: Klla0E Overview:800001..850000 Klla0E: Klla0E Overview:850001..900000 Klla0E: Klla0E Overview:900001..950000 Klla0E: Klla0E Overview:950001..1000000 Klla0E: Klla0E Overview:1000001..1050000 Klla0E: Klla0E Overview:1050001..1100000 Klla0E: Klla0E Overview:1100001..1150000 Klla0E: Klla0E Overview:1150001..1200000 Klla0E: Klla0E Overview:1200001..1250000 Klla0E: Klla0E Overview:1250001..1300000 Klla0E: Klla0E Overview:1300001..1350000 Klla0E: Klla0E Overview:1350001..1400000 Klla0E: Klla0E Overview:1400001..1450000 Klla0E: Klla0E 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Overview:450001..500000 Klla0F: Klla0F Overview:500001..550000 Klla0F: Klla0F Overview:550001..600000 Klla0F: Klla0F Overview:600001..650000 Klla0F: Klla0F Overview:650001..700000 Klla0F: Klla0F Overview:700001..750000 Klla0F: Klla0F Overview:750001..800000 Klla0F: Klla0F Overview:800001..850000 Klla0F: Klla0F Overview:850001..900000 Klla0F: Klla0F Overview:900001..950000 Klla0F: Klla0F Overview:950001..1000000 Klla0F: Klla0F Overview:1000001..1050000 Klla0F: Klla0F Overview:1050001..1100000 Klla0F: Klla0F Overview:1100001..1150000 Klla0F: Klla0F Overview:1150001..1200000 Klla0F: Klla0F Overview:1200001..1250000 Klla0F: Klla0F Overview:1250001..1300000 Klla0F: Klla0F Overview:1300001..1350000 Klla0F: Klla0F Overview:1350001..1400000 Klla0F: Klla0F Overview:1400001..1450000 Klla0F: Klla0F Overview:1450001..1500000 Klla0F: Klla0F Overview:1500001..1550000 Klla0F: Klla0F Overview:1550001..1600000 Klla0F: Klla0F Overview:1600001..1650000 Klla0F: Klla0F Overview:1650001..1700000 Klla0F: Klla0F Overview:1700001..1750000 Klla0F: Klla0F Overview:1750001..1800000 Klla0F: Klla0F Overview:1800001..1850000 Klla0F: Klla0F Overview:1850001..1900000 Klla0F: Klla0F Overview:1900001..1950000 Klla0F: Klla0F Overview:1950001..2000000 Klla0F: Klla0F Overview:2000001..2050000 Klla0F: Klla0F Overview:2050001..2100000 Klla0F: Klla0F Overview:2100001..2150000 Klla0F: Klla0F Overview:2150001..2200000 Klla0F: Klla0F Overview:2200001..2250000 Klla0F: Klla0F Overview:2250001..2300000 Klla0F: Klla0F Overview:2300001..2350000 Klla0F: Klla0F Overview:2350001..2400000 Klla0F: Klla0F Overview:2400001..2450000 Klla0F: Klla0F Overview:2450001..2500000 Klla0F: Klla0F Overview:2500001..2550000 Klla0F: Klla0F Overview:2550001..2600000 Klla0F: Klla0F Overview:2600001..2650000

General information, lifestyle, ecological niche  

The natural habitat of Kluyveromyces lactis is diverse, but many strains were originally isolated from milk-derived products. At present, two varieties in K. lactis have been defined by taxonomists: K. lactis (Dombrowski) van der Walt var. lactis (1986) and K. lactis (Dombrowski) van der Walt var. drosophilarum (1986) . The former can assimilate lactose while the latter does not.
K. lactis is a scientifically and biotechnologically non-Saccharomyces important yeast. Although it is an ascomycetous budding yeast closely related to S. cerevisiae, K. lactis has become an attractive alternative model owing to distinct metabolic and physiological properties. It is a Crabtree-negative aerobic respiro-fermentative yeast, which can accommodate a wide range of carbon sources such as lactose and other respiratory substrate . Biogenesis of its respiratory system is not sensitive to glucose repression but K. lactis also ferments glucose to ethanol in aerobic conditions. Industrial interests also stimulate research on K. lactis since it is able to grow to a high cell density and to secrete heterologous proteins efficiently.

Highlights of genetic and genomic results  

K. lactis is usually grown in standard yeast medium at an optimal temperature of 28°C. Its life cycle is essentially similar to that of S. cerevisiae, except that diploids are not stable and sporulate rapidly. K. lactis is amenable to genetic studies using conventional techniques such as crossing and tetrads analysis, gene targeting, integrative and replicative transformation.
Electrophoretic karyotyping and genome sequencing distinguishes six chromosomes ranging in size from about 1 to 3 Mb . The genome size is 10.6 Mb long (without the rDNA) with approximately 5,300 CDS and 162 tRNA genes. Mitochondrial DNA is a circular molecule with a length of about 40 kb . Some strains contain a pair of cytoplasmic linear DNA plasmids, pGKL1 (8.8 kb) and pGKL2 (13.4 kb), conferring the killer phenotype . A 2µ-like plasmid, pKD1 (4757 bp) has been isolated in some K. lactis strains and a variety of plasmid vector systems, including low/high shuttle plasmids, are also available.

References  

  1. Lachance, M.-A., Current status of Kluyveromyces systematics. FEMS Yeast Research, 2007. 7(5): p. 642-645.
  2. Wésolowski-Louvel, M., K.D. Breunig, and H. Fukuhara, Kluyveromyces lactis. In: K. Wolf, editor. Non-conventional yeast in biotechnology. Heidelberg: Springer- Verlag, 1996: p. 139-201.
  3. Breunig, K.D., et al., Regulation of primary carbon metabolism in Kluyveromyces lactis. Enzyme Microb Technol, 2000. 26(9-10): p. 771-780.
  4. Gonzalez-Siso, M.I., et al., Respirofermentative metabolism in Kluyveromyces lactis: Insights and perspectives. Enzyme Microb Technol, 2000. 26(9-10): p. 699-705.
  5. van Ooyen, A., et al., Heterologous protein production in the yeast Kluyveromyces lactis. FEMS Yeast Research, 2006. 6(3): p. 381-392.
  6. Schaffrath, R. and K.D. Breunig, Genetics and molecular physiology of the yeast Kluyveromyces lactis. Fungal Genet Biol, 2000. 30(3): p. 173-90.
  7. Sor, F. and H. Fukuhara, Analysis of chromosomal DNA patterns of the genus Kluyveromyces. Yeast, 1989. 5(1): p. 1-10.
  8. Dujon, B., et al., Genome evolution in yeasts. Nature, 2004. 430(6995): p. 35-44.
  9. Zivanovic, Y., et al., Complete nucleotide sequence of the mitochondrial DNA from Kluyveromyces lactis. FEMS Yeast Research, 2005. 5(4-5): p. 315-322.
  10. Chen, X.J., et al., Sequence organization of the circular plasmid pKD1 from the yeast Kluyveromyces drosophilarum. Nucleic Acids Res, 1986. 14(11): p. 4471-81.
  11. Chen, X.J., Low- and high-copy-number shuttle vectors for replication in the budding yeast Kluyveromyces lactis. Gene, 1996. 172(1): p. 131-6.