GL3C0228

Family relations  



Proteins in GL3C0228  


YALI0F17380phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148w IMP3 component of the U3 small nucleolar ribonucleoprotein; SubName: Full=YALI0F17380p;
YALI0F05544phighly similar to wi|NCU01949.1 Neurospora crassa NCU01949.1 and uniprot|P05755 Saccharomyces cerevisiae YBR189w SUP46 ribosomal protein; SubName: Full=YALI0F05544p;
PISO0N23355psimilar to uniprot|P32899 Saccharomyces cerevisiae SACE0H04774g IMP3_YEAST IMP3 S000007425 YHR148W Component of the SSU processome which is required for pre- 18S rRNA processing essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA;
PISO0M23068psimilar to uniprot|P32899 Saccharomyces cerevisiae SACE0H04774g IMP3_YEAST IMP3 S000007425 YHR148W Component of the SSU processome which is required for pre- 18S rRNA processing essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA;
PISO0B07173p
PISO0A07106p
DEHA2B04906phighly similar to uniprot|P05755 Saccharomyces cerevisiae YBR189w RPS9B component of the small (40S) ribosomal subunit; SubName: Full=DEHA2B04906p;
DEHA2B02728phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148w IMP3 component of the U3 nucleolar ribonucleoprotein; SubName: Full=DEHA2B02728p;
ERGO0E02376pAGOS_AEL255W, Syntenic homolog of Saccharomyces cerevisiae YBR189W (RPS9B) and YPL081W (RPS9A); 1-intron
ERGO0D06270pAGOS_ADL131C, Syntenic homolog of Saccharomyces cerevisiae YHR148W (IMP3)
KLLA0E23673phighly similar to uniprot|O13516 Saccharomyces cerevisiae YPL081W RPS9A and to uniprot|P05755 Saccharomyces cerevisiae YBR189W RPS9B Proteins component of the small (40S) ribosomal subunit; SubName: Full=KLLA0E23673p;
KLLA0E15995phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148W IMP3 Component of the SSU processome which is required for pre-18S rRNA processing essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA; SubName: Full=KLLA0E15995p;
KLTH0E12826phighly similar to uniprot|O13516 Saccharomyces cerevisiae YPL081W RPS9A and to uniprot|P05755 Saccharomyces cerevisiae YBR189W RPS9B Proteins component of the small (40S) ribosomal subunit; SubName: Full=KLTH0E12826p;
KLTH0C01958phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148W IMP3 Component of the SSU processome which is required for pre-18S rRNA processing essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA; SubName: Full=KLTH0C01958p;
SAKL0H09768p
SAKL0G15268phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148W IMP3 Component of the SSU processome, which is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA;
ZYRO0B15400phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148W IMP3 Component of the SSU processome which is required for pre-18S rRNA processing essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA; SubName: Full=ZYRO0B15400p;
ZYRO0A13200phighly similar to uniprot|O13516 Saccharomyces cerevisiae YPL081W RPS9A and to uniprot|P05755 Saccharomyces cerevisiae YBR189W RPS9B Proteins component of the small (40S) ribosomal subunit; SubName: Full=ZYRO0A13200p;
CAGL0M06501p(ohnolog of CAGL0H05511g), highly similar to uniprot|P05755 Saccharomyces cerevisiae YBR189w SUP46 or uniprot|O13516 Saccharomyces cerevisiae YPL081w RPS13B; SubName: Full=Strain CBS138 chromosome M complete sequence;
CAGL0I01826phighly similar to uniprot|P32899 Saccharomyces cerevisiae YHR148w IMP3; SubName: Full=Similar to uniprot|P32899 Saccharomyces cerevisiae YHR148w IMP3;
CAGL0H05511p(ohnolog of CAGL0M06501g), highly similar to uniprot|O13516 Saccharomyces cerevisiae YPL081w RPS13B or uniprot|P05755 Saccharomyces cerevisiae YBR189w SUP46; SubName: Full=Strain CBS138 chromosome H complete sequence;
SACE0P04510pYPL081W (ohnolog of YBR189W) RPS9A, rp21; YS11; S9A; S13;Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarity to E. coli S4 and rat S9 ribosomal proteins
SACE0H04774pYHR148W IMP3, Component of the SSU processome, which is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA
SACE0B06688p*GO_function: RNA binding; rRNA binding; structural constituent of ribosome [PMID 6814480];

Gene Ontology terms  


None available yet



Legend and notes  


Type of family, see Definitions for more information.
GL3R*     Robust families
GL3C*     Consensus families
GL3M*     Multiple choice families (resolved arbitrarily in favor of smaller groups)
GL3U*     Unique element families (singletons)

Phyletic pattern
This pattern is an ordered chain of letters indicating which species are involved in the family. A letter indicates that the species is present, a dash in place of the letter shows that the species is absent.
LetterSpecies
sSaccharomyces cerevisiae
cCandida glabrata
zZygosaccharomyces rouxii
lSaccharomyces kluyveri
tKluyveromyces thermotolerans
kKluyveromyces lactis var. lactis
gEremothecium gossypii
dDebaryomyces hansenii var. hansenii
yYarrowia lipolytica

Phylogenetic profile
This profile is an ordered chain of numbers indicating how many proteins of each species are present in the family. The order of the numbers is the same as the order in the phyletic pattern (see above).

Family relations
Click on a node of the image to go to the page of the corresponding gene. The weight of an edge between two genes is the percent amino-acid identity in a Needleman Wunch global alignment between the translation products of the two genes. The graph shown is the subgraph induces by edges with weight ≥ 20%.

Data
Colored multiple sequence alignments are computed using TCoffee.