ZYRO0G22352g


similar to uniprot|P53178 Saccharomyces cerevisiae YGL047W

Genomic environment map

Element type: CDS
Element length: 603 nucleotides,
on sense strand of
Zyro0G: 1837168..1837770.
Other names:
ZYRO-ORF30
Coding sequence: 201 codons.
Database cross references:
EMBL: CU928179
GeneID: 8206787
GenomeReviews: CU928179_GR

Computed results  

None available yet


Homologs and Orthologs

Homologs in protein family: GL3R1263
Orthologs: strict determination not possible; homologs must be refined manually

Protein ZYRO0G22352p  


similar to uniprot|P53178 Saccharomyces cerevisiae YGL047W; SubName: Full=ZYRO0G22352p;

Protein domain map

Protein length: 200 amino acids
Protein family: GL3R1263
Database cross references:
InterPro: IPR007235
KEGG: zro:ZYRO0G22352g
Pfam: PF04101
RefSeq: XP_002498947.1
UniProtKB/TrEMBL: C5E1N0
UniProtKB: C5E1N0_ZYGRC

Phylogeny  

PhylomeDB:ZYRO0G22352g

Computed results for ZYRO0G22352p  

None available yet

Gene Ontology terms  


Sequence data  


Nucleotide sequence    

>ZYRO0G22352g.nt
ATGCCTATAAAGACCATTTTCGTCACCTGTGGTGCTACTGTCCCATTTCCTCAATTGGTA
GAGGCTGTACTGTCTCCCAGAATCGTTGAAGAATTGCTAAATCTTGGATTTAAGAGGATC
ATTGTACAGTTTGGTAGAAATTACCGAGAATCATTTACCCAGTCAATAAACGTTGACCAA
TCATTACCACCATCGCAAACATATTTGGGGTTTAATGGCGATCCCGTCCACGGTTTTTCC
CAAGGTTCTTCAGGGAAACTGGAAATCATAGGATTCGAATACTCTACGAGAATTCAAGAT
GTAATTCAAGAGAATGCTGATTTGGTCATCTCTCATGCTGGTACTGGATCTATCTTAGAT
TCATTGAGATTGGGAAAACCCTTGATAGTCTGTGTCAATGACACGTTGATGGATAATCAT
CAACAAGAAATTGCTGATCAATTTGCATCATCAAACCACCTATGGGCATGTTTACCGAGA
GTAGACGACGTCGTCCAATGTCTCAGAAGATCACAAACTGAAAGAACAGAACCGTTTCCA
TCTGCATACAACAGAAATTTTGAAAAAGCATTGGAAGATTTAGCGTACGGAACATCTAAC
TAA

Coding sequence    

>ZYRO0G22352g.cds
ATGCCTATAAAGACCATTTTCGTCACCTGTGGTGCTACTGTCCCATTTCCTCAATTGGTA
GAGGCTGTACTGTCTCCCAGAATCGTTGAAGAATTGCTAAATCTTGGATTTAAGAGGATC
ATTGTACAGTTTGGTAGAAATTACCGAGAATCATTTACCCAGTCAATAAACGTTGACCAA
TCATTACCACCATCGCAAACATATTTGGGGTTTAATGGCGATCCCGTCCACGGTTTTTCC
CAAGGTTCTTCAGGGAAACTGGAAATCATAGGATTCGAATACTCTACGAGAATTCAAGAT
GTAATTCAAGAGAATGCTGATTTGGTCATCTCTCATGCTGGTACTGGATCTATCTTAGAT
TCATTGAGATTGGGAAAACCCTTGATAGTCTGTGTCAATGACACGTTGATGGATAATCAT
CAACAAGAAATTGCTGATCAATTTGCATCATCAAACCACCTATGGGCATGTTTACCGAGA
GTAGACGACGTCGTCCAATGTCTCAGAAGATCACAAACTGAAAGAACAGAACCGTTTCCA
TCTGCATACAACAGAAATTTTGAAAAAGCATTGGAAGATTTAGCGTACGGAACATCTAAC
TAA

Predicted translation product    

>ZYRO0G22352g.aa
MPIKTIFVTCGATVPFPQLVEAVLSPRIVEELLNLGFKRIIVQFGRNYRESFTQSINVDQ
SLPPSQTYLGFNGDPVHGFSQGSSGKLEIIGFEYSTRIQDVIQENADLVISHAGTGSILD
SLRLGKPLIVCVNDTLMDNHQQEIADQFASSNHLWACLPRVDDVVQCLRRSQTERTEPFP
SAYNRNFEKALEDLAYGTSN*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites