HomeZYRO0G09152g
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062W LCB2 Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1707 nucleotides,
on sense strand of
Zyro0G: 734390..736096.
Other names:
ZYRO-ORF1167
Coding sequence: 569 codons.
Element length: 1707 nucleotides,
on sense strand of
Zyro0G: 734390..736096.
Other names:
ZYRO-ORF1167
Coding sequence: 569 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.F3 GL3C0100.N1Orthologs by synteny: SAKL0H19272g KLTH0H07920g KLLA0D02134g
Protein ZYRO0G09152p 
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062W LCB2 Component of serine palmitoyltransferase responsible along with Lcb1p for the first committed step in sphingolipid synthesis which is the condensation of serine with palmitoyl-CoA to form 3- ketosphinganine
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>ZYRO0G09152g.nt CTTTCCAATTTACATTGGAAGGTGGAACTGGGATCTCGTTGGCACGTTCAGGGCAATAAC GGTAGTGGTAAGTCAACGCTTCTGTCACTGATTACTGCAGAACATCCTCAGTCGTGGAAT AGTAGAGTTGTAGAGCATGGTACACCACGTAGAACGGGCAGCTCAAGCTATTTTGATATC AACAAGAACATAGGCATGTCAGCACCTGAATTGCATGCGATCTTCTTGAAAAACTGTGGA GATCGCCTCAATGTCAGAGAGTCAATCGCTACTGGATTCCATGAAGCCTCCAATAATAAT TTTACACCAATATGGTCAAAATTGAACAAAGACCAACAAACCATGGTGGAAAAATTTATC AAATATTTTGATCTACCATCTGATAAACTATTCGGGGAATTGAGTGTAAGCGATCAAAAA TTGGCACTTTTTGTAAGAAGTATCGTTAAGATGCCAAAATTGTTGGTGCTTGATGAAGCG TTTTCGGGTATGGAATTAGAACCTATGTTAAGATGTCATGAATTGTTGAATCACTGGCCA GGTACTACAATGGTGGTATCACACGTCCCAGAGGAAACGCCAAAATGTCATCACTATTTG AGATTAGTATCTCCAGGCGTATACGATATTGGTCAAGTACGGTGAATCGTAGTATCACGT GTTCTTGGCGTGCTCGTACAATATGTGGTGTTCTGGTGTAAACATGGACTCCTTTTTTCC TCTTCGACATGAAAATTTCTTTGTACGTTTATTAAACAAAAAAAGAACCATTTCTAAGTA AGATTAACATAAAGTTCTCACTTGTATATACGTTAAAATATACTTGGCAGAGGCTGTCTT CTAAAATCAATTGTTAGGAGGAGGCAAATAATCTGTTACTACAGAAAGACAAAGTGCTAA AAGGAAGATTTTATTGCTTCTTTCCTTCGTTCCTTTCTTCCTTGTTATTACTATTATAAT CTAATCCTATCCGCTGTTGTTATCGTTCTTCCACTAAGCAATGAGCGATGCTAAAGTAGA AGGGCCTACTGGAAGCACAAGAGTTCCTCTGTTTGTTCCTGAGAATTTGCCAGCTGATGT GAAAAAAGAGAATGAATACGGTACGTTGACATCAAAGGAACATCTTCACCAGACGAAATC GCTTAATGGTAAACCAATGGAGCCACCAATTATGGATACACCACCATACTATATTTCTCT TATAACGTATCTTAATTATTTGATTGTTATTATCTTTGGCCACATGCACGATTTTCTGGG TATGACTTTTCAAAAGGATAGTCATCAAGATGTCATGGAAAAAGATGGATGGGCACCATG GTATTCAAAATTTGAATCTTTCTTTTCAAGAAGAATGAAAAAGAAGATTGATGATTGTTT CTCGAGACCTACAACTGGTGTTCCTGGTAGATTTATTCGTTGTATCGACAGAATTTCTCA TGAGGAGAACAAATACTTTACCTACCCAGGTACCACCTCTATGTGCCTAAATTTGTCTTC ATACAATTATTTGGGATTCGCCCAAAGTGAAGGTCAATGTACTACTACTGCTTTGCAAAG TGTGGATAAATACGGTATCCATAGTGGTGGACCACGTACTCAAATTGGTACCACTGATTT ACATTTAGATGCTGAAAGGTTAATTGCATCTTTTCTAGGTAAACAGGATGCAGTAATCTT TTCCATGGGGTATGGTACCAATGCTAATTTTTTCAATGCCTTCTTGGATTCCAAATGTCT TGTCATTTCAGATGAGTTGAACCATGCTTCCATCAGAACTGGTGTTAGACTTTCAGGTGC AGCAGTGAGAACCTTTGCACACAACGATATGGTCGGTTTGGAGAAATTGATTAGGGAACA AATTGTTTTGGGCCAACCAAAGACTAACCGCCCGTGGAAGAAAATTCTAATCTGTGTCGA AGGACTTTATTCAATGGAAGGTACTCTTTGTAGCTTACCAGAAGTGGTGGAATTGAAGAA AAAATACAAATGTTACTTATTTGTTGATGAAGCTCATTCTGTAGGTGCTATGGGACCAAC AGGTCGTGGTGTATGTGATTTATTTGGTGTTGACCCAAATGACGTTGATTTCCTAATGGG AACTTTAACAAAGTCATTCGGTGCAGCTGGTGGTTACATTGCATCAAATAAATGGGTTAT CGATAGACTAAGATTAGATTTAACCACTTCCAATTATGCAGAACCAACACCTGCACCTGT TCTAGCACAAATTATTGCATCTTTGAAAACCATAAAAGGTGAACTAGCACCTGGTGAAGG TAAGGAAAGATTACAAAGAATTGCGTTCAATTCACGTTATCTGCGGTTAGGTCTACAAAG ATTAGGATTTATCGTTTACGGGGCTCCTGATTCTCCTGTTATCCCATTATTATTATACTG TCCAACAAAGATGCCTGCATTTTCAAGAATGATGCTTCAAAGAAAAATCGCTGTTGTTGT TGTTGCATATCCAGCAACACCTCTGATCGAATCAAGAGTGCGGTTTTGCGTATCTTCATC ATTGACAAAGGACGATTTGGACTATTTGTTACGTCATGTTAGTGAGATTGGTGATATGCT TTTCTTAAAAGCTAGTTCAGGTGCCGCTAGTGTACCACAAGATGGTAGACCTCCAAGATG GGATGTAGAGGACGTCATTGCTCGTACCGCAGAGGATTGTAAGAATGACAATTTTTTCTT AACTTAGACGTTTAGTGTAATAATGCAATAAGAAGATTTTGGGTTGGGTTCATTATTCTT TGTTCAAAAAGCTACATACTCACGCACGCATATATATATATAAATATATATAGACGCCAG AAAGATATCATAATTTTCCCCCAATATTTGAATTCTGTATACAGGGGTCCTGTCTCCCCT TTGGTTATTCGGATCGCGCTACAAAGTTGACTCGAGATTGATTAGGTGCTCTTTAGCTCC ATACACACAAAGGGCAGTAGCATTGATAGCATGGCTTCTGAATTATACTATTTTAATACC GTTACAA
>ZYRO0G09152g.cds ATGAGCGATGCTAAAGTAGAAGGGCCTACTGGAAGCACAAGAGTTCCTCTGTTTGTTCCT GAGAATTTGCCAGCTGATGTGAAAAAAGAGAATGAATACGGTACGTTGACATCAAAGGAA CATCTTCACCAGACGAAATCGCTTAATGGTAAACCAATGGAGCCACCAATTATGGATACA CCACCATACTATATTTCTCTTATAACGTATCTTAATTATTTGATTGTTATTATCTTTGGC CACATGCACGATTTTCTGGGTATGACTTTTCAAAAGGATAGTCATCAAGATGTCATGGAA AAAGATGGATGGGCACCATGGTATTCAAAATTTGAATCTTTCTTTTCAAGAAGAATGAAA AAGAAGATTGATGATTGTTTCTCGAGACCTACAACTGGTGTTCCTGGTAGATTTATTCGT TGTATCGACAGAATTTCTCATGAGGAGAACAAATACTTTACCTACCCAGGTACCACCTCT ATGTGCCTAAATTTGTCTTCATACAATTATTTGGGATTCGCCCAAAGTGAAGGTCAATGT ACTACTACTGCTTTGCAAAGTGTGGATAAATACGGTATCCATAGTGGTGGACCACGTACT CAAATTGGTACCACTGATTTACATTTAGATGCTGAAAGGTTAATTGCATCTTTTCTAGGT AAACAGGATGCAGTAATCTTTTCCATGGGGTATGGTACCAATGCTAATTTTTTCAATGCC TTCTTGGATTCCAAATGTCTTGTCATTTCAGATGAGTTGAACCATGCTTCCATCAGAACT GGTGTTAGACTTTCAGGTGCAGCAGTGAGAACCTTTGCACACAACGATATGGTCGGTTTG GAGAAATTGATTAGGGAACAAATTGTTTTGGGCCAACCAAAGACTAACCGCCCGTGGAAG AAAATTCTAATCTGTGTCGAAGGACTTTATTCAATGGAAGGTACTCTTTGTAGCTTACCA GAAGTGGTGGAATTGAAGAAAAAATACAAATGTTACTTATTTGTTGATGAAGCTCATTCT GTAGGTGCTATGGGACCAACAGGTCGTGGTGTATGTGATTTATTTGGTGTTGACCCAAAT GACGTTGATTTCCTAATGGGAACTTTAACAAAGTCATTCGGTGCAGCTGGTGGTTACATT GCATCAAATAAATGGGTTATCGATAGACTAAGATTAGATTTAACCACTTCCAATTATGCA GAACCAACACCTGCACCTGTTCTAGCACAAATTATTGCATCTTTGAAAACCATAAAAGGT GAACTAGCACCTGGTGAAGGTAAGGAAAGATTACAAAGAATTGCGTTCAATTCACGTTAT CTGCGGTTAGGTCTACAAAGATTAGGATTTATCGTTTACGGGGCTCCTGATTCTCCTGTT ATCCCATTATTATTATACTGTCCAACAAAGATGCCTGCATTTTCAAGAATGATGCTTCAA AGAAAAATCGCTGTTGTTGTTGTTGCATATCCAGCAACACCTCTGATCGAATCAAGAGTG CGGTTTTGCGTATCTTCATCATTGACAAAGGACGATTTGGACTATTTGTTACGTCATGTT AGTGAGATTGGTGATATGCTTTTCTTAAAAGCTAGTTCAGGTGCCGCTAGTGTACCACAA GATGGTAGACCTCCAAGATGGGATGTAGAGGACGTCATTGCTCGTACCGCAGAGGATTGT AAGAATGACAATTTTTTCTTAACTTAG
>ZYRO0G09152g.aa MSDAKVEGPTGSTRVPLFVPENLPADVKKENEYGTLTSKEHLHQTKSLNGKPMEPPIMDT PPYYISLITYLNYLIVIIFGHMHDFLGMTFQKDSHQDVMEKDGWAPWYSKFESFFSRRMK KKIDDCFSRPTTGVPGRFIRCIDRISHEENKYFTYPGTTSMCLNLSSYNYLGFAQSEGQC TTTALQSVDKYGIHSGGPRTQIGTTDLHLDAERLIASFLGKQDAVIFSMGYGTNANFFNA FLDSKCLVISDELNHASIRTGVRLSGAAVRTFAHNDMVGLEKLIREQIVLGQPKTNRPWK KILICVEGLYSMEGTLCSLPEVVELKKKYKCYLFVDEAHSVGAMGPTGRGVCDLFGVDPN DVDFLMGTLTKSFGAAGGYIASNKWVIDRLRLDLTTSNYAEPTPAPVLAQIIASLKTIKG ELAPGEGKERLQRIAFNSRYLRLGLQRLGFIVYGAPDSPVIPLLLYCPTKMPAFSRMMLQ RKIAVVVVAYPATPLIESRVRFCVSSSLTKDDLDYLLRHVSEIGDMLFLKASSGAASVPQ DGRPPRWDVEDVIARTAEDCKNDNFFLT*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/ZYRO/ZYRO0G09152p