HomeZYRO0F09152g
weakly similar to uniprot|Q02770 Saccharomyces cerevisiae YPL064C CWC27 Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing
Element type: CDS
Element length: 789 nucleotides,
on sense strand of
Zyro0F: 743076..743864.
Other names:
ZYRO-ORF2678
Coding sequence: 263 codons.
Element length: 789 nucleotides,
on sense strand of
Zyro0F: 743076..743864.
Other names:
ZYRO-ORF2678
Coding sequence: 263 codons.
Homologs and Orthologs
Homologs in protein families: GL3R3437 GL3R3437.F1 GL3R3437.N1Orthologs by synteny: SAKL0H10318g KLTH0E12276g ERGO0D10384g
Protein ZYRO0F09152p 
weakly similar to uniprot|Q02770 Saccharomyces cerevisiae YPL064C
Protein domain map
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>ZYRO0F09152g.nt ATGACAACTTTACCTACATCTCTATTCATCTTTGAAATATCCTTGATGTGAATACCATCC TTATAAACACAATGCTCTTTGAAAAGGTTGTAAGAGATGAACGCATGGATTGGATCCAAT TTTTCACAAATTCTGTCAGAGTACATCATGTAATTGGAGGAAAAGAGAACAATTTCATAG TATTGAGAAAGGTAACCAAGGAAATAGTCACAGCCAGGACGCTTAGCGGTTCTCCAACCA TACTTTTTAGACCATTCACTGTGAACCAAGAAATCTTCCAATGTAATAACCAAGGTCAAT GGTCTTTGGTATGGTGGTGGTGGTGGTGGTGGCAAGAGGTCGGGGAAAGGTGGTTCTTGG AAATAGCTAAACATATTGTGGATACGTGTCATAAATCTTTGATACATCAATTGTGCTGTA TAGCCATTATCAACTCCCTGTCTCACTTCTTTGGAATCTCCTTCTTCCCAATCTCTTGTC ATATACAGACCTACACCTGCCAAAGATGCAAACGTGAAGATGTAGAACCAATTTGCATAC CTTTCACGTTTAATATCAGTGGATGACTGTCTTTTTCTACGCTTCTTCTTATCATCACCA CGACCACTCTCACTAGCGCCAGCGGCACCCTTACCAGCCTCACTGTCACCTTCTTGGGAT TTCTGCTGATGCTGGTTACTAGGATCATCAAGATCAAATCCAGCCTTTGCCAGTAGATCC TCGCTTAGAATTGATTGCGGCTTTTCATCCTTACCATCCTGTTGTTTCTTTTGCATTACA GAACTAAAAGTACCAAAATTTAAGCGTCTTGGCATTGGTCTCACCAATGTTGCATTGGTA GCGACTCGACCCAATAATGTGGTCGAACGTCTAAGGGCCAACATGATCTCAAATGCTCTT GTTAATCTTGCTTTGTCTCTTCGTATTAGTGAAAGTATTTTAACAAGGTGGAATTAAATG AAAAGTTTTCAACACTTCAAAGGTGAAAAAAAGGAGTGCGATGAGCATAGAACCAAGTAC TAGTTCTAAATGTATAATAAATACCAGTAAGGGTCGAATTGATGTTGAGCTATGGGCTCG TGAGTTGCCTAATACTACAAAAATCTTCTTAGAGTCGTGCCAAGGGCAAAAGTTGCAAAG ATTTGATGGTGTGAGATCAAATGGTACAGTGACGATAGTAGGCGGTAGTCCTGACAAGAA GCTAGATTACGAACGACATGCACGTATACGTGGTTGTCGTAGGGGTAGCGTTGGCTACGA CAGAAATGTAAACCAGTGGTTTTTTGCCAGTCAAGAGTGTTCGATAGAAGATGATTCATG GATTTTGATCGGTAAGATAGTTGGCGAATCCAACTACGTGCTAAGAAGAATTGTAGGTGA AAGTCAGTTGGATGACCGTGGGAAGTTTGTATATCCACCAATAGTGAACAAAACTGAAGT TACAGTTCCTCATTTTGATTTGGGAACTTTACCACAGGTGGGACCAAACCTACCCAAAGA AGAAAAACCAAGATTTTTCAAGAGAGGTAACGCTAAGGTCAAATTAAGTTATGAAGAAGA AGAAGAAGAAGAAGATTATGAACGAGATGCTGTACCTTTGAAAAAAATCAAACCACCACC AGGTGTCAAAGATAAAGGTAAGAATGATCCTTCCACCAAAACGCAGGCGTTAAAGGAAAA GGAACCAACAGAAGAAATATCTTTACGGGAAAAAGAGACGTTAGCTTTATTGTCCCAATT TCAGCAGCGCCAAAAAGGCCGTGATAACATTCTAAACCGCCGCCCATAAATAAAATAACC TATTTTATTGAGTCTAAATTAAATCCTATCTATTAATCACGTTACATCCAAACTCCTATC TTCTTTCCGCATGCATGGATACATGCTTGTACAATTACATTAAAACACAAATAAAAAAAG ACCAAAAAAAACCAACGTACAAAAAAAAAGTCAGAGAAATGGAACCTGCCCTCAAAATTC TTACGACTTAGTCAGTGGAGGTTTCCTTTACAATGGTTGCGTTATTGTGCCCTTCAATTT AAAATGGAACCTGCCCTCAAAAATTTTTTGAAAGACTTAGTCAATGGAG
Coding sequence
>ZYRO0F09152g.cds ATGAGCATAGAACCAAGTACTAGTTCTAAATGTATAATAAATACCAGTAAGGGTCGAATT GATGTTGAGCTATGGGCTCGTGAGTTGCCTAATACTACAAAAATCTTCTTAGAGTCGTGC CAAGGGCAAAAGTTGCAAAGATTTGATGGTGTGAGATCAAATGGTACAGTGACGATAGTA GGCGGTAGTCCTGACAAGAAGCTAGATTACGAACGACATGCACGTATACGTGGTTGTCGT AGGGGTAGCGTTGGCTACGACAGAAATGTAAACCAGTGGTTTTTTGCCAGTCAAGAGTGT TCGATAGAAGATGATTCATGGATTTTGATCGGTAAGATAGTTGGCGAATCCAACTACGTG CTAAGAAGAATTGTAGGTGAAAGTCAGTTGGATGACCGTGGGAAGTTTGTATATCCACCA ATAGTGAACAAAACTGAAGTTACAGTTCCTCATTTTGATTTGGGAACTTTACCACAGGTG GGACCAAACCTACCCAAAGAAGAAAAACCAAGATTTTTCAAGAGAGGTAACGCTAAGGTC AAATTAAGTTATGAAGAAGAAGAAGAAGAAGAAGATTATGAACGAGATGCTGTACCTTTG AAAAAAATCAAACCACCACCAGGTGTCAAAGATAAAGGTAAGAATGATCCTTCCACCAAA ACGCAGGCGTTAAAGGAAAAGGAACCAACAGAAGAAATATCTTTACGGGAAAAAGAGACG TTAGCTTTATTGTCCCAATTTCAGCAGCGCCAAAAAGGCCGTGATAACATTCTAAACCGC CGCCCATAA
Predicted translation product
>ZYRO0F09152g.aa MSIEPSTSSKCIINTSKGRIDVELWARELPNTTKIFLESCQGQKLQRFDGVRSNGTVTIV GGSPDKKLDYERHARIRGCRRGSVGYDRNVNQWFFASQECSIEDDSWILIGKIVGESNYV LRRIVGESQLDDRGKFVYPPIVNKTEVTVPHFDLGTLPQVGPNLPKEEKPRFFKRGNAKV KLSYEEEEEEEDYERDAVPLKKIKPPPGVKDKGKNDPSTKTQALKEKEPTEEISLREKET LALLSQFQQRQKGRDNILNRRP*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/ZYRO/ZYRO0F09152p