HomeZYRO0D07282g
similar to uniprot|P25045 Saccharomyces cerevisiae YMR296C LCB1 Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1662 nucleotides,
on sense strand of
Zyro0D: 631043..632704.
Other names:
ZYRO-ORF5133
Coding sequence: 554 codons.
Element length: 1662 nucleotides,
on sense strand of
Zyro0D: 631043..632704.
Other names:
ZYRO-ORF5133
Coding sequence: 554 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.F1 GL3C0100.N6Orthologs by synteny: SAKL0H01144g KLTH0B09306g KLLA0A09955g ERGO0B08624g
Protein ZYRO0D07282p 
similar to uniprot|P25045 YMR296C Saccharomyces cerevisiae LCB1 Component of serine palmitoyltransferase responsible along with Lcb2p for the first committed step in sphingolipid synthesis
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>ZYRO0D07282g.nt CACTAGTCAAAGTTCCTTTTCAAGAACTCTTACTGTGCCTCGAAGTTGTGAAGCGGAATG GACAAGATTACCGCCCAAGATGCAACCGCCCTCATCCTTTTTATACAGCTATCAGCTCAA AAAATTTCCGCCTCCCCTTTTTTACCCTTTTTTAACACCCCTAAGGTTAGTGCGGGTAAT GGCAGGGTAGCACTGCGTTAAACTAGACAAGGTAACAAAACGCTTGGGCGGTAATGTAGT TCCAACAGTTTAACTCTGCCTTCAAAGAAAATGAAAATCTAGCGGTAGCTAAAGAAAAGG TAACTTAAATGCCATAACTGACGATTCTGGGCGCTCAATAAAACCTGTTGTGCTACAGCG GGAGATTATTCACGGGTTCGAATTTCATCCGCGGACTCACGTACAAGATGACTACAGAGA AACTGCAGAATTAATAAGTCACGTGAACGGAGCACACAGTCAAATATCAGTACTGTATGT AAGAGCATCCTAATGACCAGCATAGGGGGATAACCGGCCTCAATTAAATGGGTACTTCAG GTGGTTCCCGCTGTTTCTCCCCTATTCGCATATATGTCACGACCGACGACACCATTACCC GGTGTTCTCTTGTCGGAAAGGGAAGAGGAAGAATGGAAAGAAAACTTAACAGAAAAGAAA AAAAACAACAGAGCGGTTGGAAGTTGAACGCGTCCCTCGAGTACTGGTTTCTCTGCAAAC TTGTCAGTCATTGATCAAGAACCATTTGCTGGTACTAAGGCTATTCTATCTACGTCAACT ACCATCACCTAATCAATTCTACGGCTAAGGATTATTTATTTTGAATTCCTTTAATTCCTT CATTAGCATTTGCATTTTTAAATCAAGAATTGAAAAATAAAAACAATTTACGTAAAGGAA AGGAAAAAAAAAAAGTATAAAAGACCAAATACTGAATTAAGGACGTCACATCTCTACTAG TTGTGTCTGATTTGTATCTGCCCTTTTTCTGTTGCTAACCATGCCGCATATTCCTGAGGT TCTACCTAAATCCATACCGATTCCAAGCTTTATCGTTACCACTTTTTCATATGTTTGGTT CTACCTCTACCCGGTGCTATCACGAATTCCCGGTGGTGATTTCCTTATACACTACGTGAG AAAGTCTCACCAAGATGATCCATATCGTACATTTGTTGAAATCGTATTAATTCTGTATGG AATTTACTACTATTTGTCAAAACCACAACAAAAGAAAGGTTTACAATCAAATAAACCAAA TTTAAGTCCACAAGAAGTGGATGACTTAATTGAAGAATGGCAACCTGAACCTATTGTTGA TCCAACTGTAATGGATTTACAGAGATGGAGATTAGATGCCATACCAGTGATAGATGGTAC AGGTGTTAACAACCGTATTAACATTTTCCAAAATGGTAAAAAGCATGAAAACGTCTTAAA CCTTTCATCCAACAACTTTTTACATTTATCACAAACCCCACGAGTGCAGGACGTTGCTAG AAGTGTTATCAAGAATTACGGTGTTGGTGCTTGTGGACCTGCCGGGTTCTATGGTAATCA GGACGTGCATTACAACCTGGAATACAGATTATCGGATTTCTTCGGTACGGAATCTGCCGT TCTCTACGGTCAAGATTTCTGTACTTCAGCATCAGTGATCCCTGCATTCACTAAAAGAGG TGACTTATTGGTAGCAGATGAGAAAGTTTCATTAGCTGTACAAAATGCATTGCAATTGAG TCGGTCTACAGTTTACTATTACGAACACAACAATATGGAATCTTTGGAGGCAATTTTATC CGAGTTAGTCGAATCTGAAAAGAAGGAAAACTTACCTGCGATTTCAAGAAAATTTATCGT CACTGAAGGTATTTTCCAAAATACAGGTGATATCCCACCATTGCCACAATTGTTCGAGCT AAAAAACAAATATAAATTTAGACTTTTCGTCGATGAAACCTTATCACTTGGTGTGTTGGG TAAGTCCGGTAGAGGTTTAACGGAATATTTCGGTTTGCCTCGTAAGGAAAGTATCGACAT TACAGTCGGTTCAATGGCTCATGCATTTGGATCGTCAGGTGCATTTGTCTTGGGTGATGC TGTCATGTCCCATCATCAACGTATTGGTTCCTATGCATACTGTTTCTCAGCGTCATTACC ACCATACACAGCTCGTAGTGTGGATGAAGTCTTACGGATTTTAGAGGAAGATAATTCTTC CGTTACTAAATTACAAAAATTCTCCAAACTATTACACAATGAATTTTTGACCGATGCTAA ATTACCCAAATACTTGGAAATTACTTCAAGTCCCTTATCCCCCATCTTACATTTACGGTT AACACCAGAATTTAGATACAGAAAATTTGGTTATTCAGCAGAAGATCTATTTTGTGAAAC AATGCACCAGCAAAAACTGGTCGCTACCACTCGTTACATCGAACCGTATGAACAGGAGGA AAGATTTTTACAAAAAATTGTCGACCGTCTACTGGTGGAAAGTGGTCTCCTAATTACCAG GAATATCATAGTCGTTAGACAAGAATCATTACCCTTTTTGCCAAGTTTAAAGATTTGTGT CAATTCAGGCTTACAAGAGAGCGATATCGTCGAATCTTGTAAATCGATTAAACAAGTTTT GGTCGAGACTTGTTCTGAGTAGTACCAGTAATAATAACAGTAATAATAATAACAATAACA AAAACAAGAATAAAAATAATAAGAACAAGAATAATAACGATAGGTGGTGTGTATAGAACA ATCAACGTCCCCGCAGAAATTCCCAGTATCGTACACCAGTTGATAAAAAGACATACAGGA GGGAACCAGCAAATGATGCATCCATGCGGAGGACAACTTGTCAAGAACAAGATAGATAAC AAGTATAAATACAAGCAACTATATCCATCTTGACAATCAAGCAGTACTTTTCCATGAGCC GTACGTGTTTGTGATTGGCCTA
>ZYRO0D07282g.cds ATGCCGCATATTCCTGAGGTTCTACCTAAATCCATACCGATTCCAAGCTTTATCGTTACC ACTTTTTCATATGTTTGGTTCTACCTCTACCCGGTGCTATCACGAATTCCCGGTGGTGAT TTCCTTATACACTACGTGAGAAAGTCTCACCAAGATGATCCATATCGTACATTTGTTGAA ATCGTATTAATTCTGTATGGAATTTACTACTATTTGTCAAAACCACAACAAAAGAAAGGT TTACAATCAAATAAACCAAATTTAAGTCCACAAGAAGTGGATGACTTAATTGAAGAATGG CAACCTGAACCTATTGTTGATCCAACTGTAATGGATTTACAGAGATGGAGATTAGATGCC ATACCAGTGATAGATGGTACAGGTGTTAACAACCGTATTAACATTTTCCAAAATGGTAAA AAGCATGAAAACGTCTTAAACCTTTCATCCAACAACTTTTTACATTTATCACAAACCCCA CGAGTGCAGGACGTTGCTAGAAGTGTTATCAAGAATTACGGTGTTGGTGCTTGTGGACCT GCCGGGTTCTATGGTAATCAGGACGTGCATTACAACCTGGAATACAGATTATCGGATTTC TTCGGTACGGAATCTGCCGTTCTCTACGGTCAAGATTTCTGTACTTCAGCATCAGTGATC CCTGCATTCACTAAAAGAGGTGACTTATTGGTAGCAGATGAGAAAGTTTCATTAGCTGTA CAAAATGCATTGCAATTGAGTCGGTCTACAGTTTACTATTACGAACACAACAATATGGAA TCTTTGGAGGCAATTTTATCCGAGTTAGTCGAATCTGAAAAGAAGGAAAACTTACCTGCG ATTTCAAGAAAATTTATCGTCACTGAAGGTATTTTCCAAAATACAGGTGATATCCCACCA TTGCCACAATTGTTCGAGCTAAAAAACAAATATAAATTTAGACTTTTCGTCGATGAAACC TTATCACTTGGTGTGTTGGGTAAGTCCGGTAGAGGTTTAACGGAATATTTCGGTTTGCCT CGTAAGGAAAGTATCGACATTACAGTCGGTTCAATGGCTCATGCATTTGGATCGTCAGGT GCATTTGTCTTGGGTGATGCTGTCATGTCCCATCATCAACGTATTGGTTCCTATGCATAC TGTTTCTCAGCGTCATTACCACCATACACAGCTCGTAGTGTGGATGAAGTCTTACGGATT TTAGAGGAAGATAATTCTTCCGTTACTAAATTACAAAAATTCTCCAAACTATTACACAAT GAATTTTTGACCGATGCTAAATTACCCAAATACTTGGAAATTACTTCAAGTCCCTTATCC CCCATCTTACATTTACGGTTAACACCAGAATTTAGATACAGAAAATTTGGTTATTCAGCA GAAGATCTATTTTGTGAAACAATGCACCAGCAAAAACTGGTCGCTACCACTCGTTACATC GAACCGTATGAACAGGAGGAAAGATTTTTACAAAAAATTGTCGACCGTCTACTGGTGGAA AGTGGTCTCCTAATTACCAGGAATATCATAGTCGTTAGACAAGAATCATTACCCTTTTTG CCAAGTTTAAAGATTTGTGTCAATTCAGGCTTACAAGAGAGCGATATCGTCGAATCTTGT AAATCGATTAAACAAGTTTTGGTCGAGACTTGTTCTGAGTAG
>ZYRO0D07282g.aa MPHIPEVLPKSIPIPSFIVTTFSYVWFYLYPVLSRIPGGDFLIHYVRKSHQDDPYRTFVE IVLILYGIYYYLSKPQQKKGLQSNKPNLSPQEVDDLIEEWQPEPIVDPTVMDLQRWRLDA IPVIDGTGVNNRINIFQNGKKHENVLNLSSNNFLHLSQTPRVQDVARSVIKNYGVGACGP AGFYGNQDVHYNLEYRLSDFFGTESAVLYGQDFCTSASVIPAFTKRGDLLVADEKVSLAV QNALQLSRSTVYYYEHNNMESLEAILSELVESEKKENLPAISRKFIVTEGIFQNTGDIPP LPQLFELKNKYKFRLFVDETLSLGVLGKSGRGLTEYFGLPRKESIDITVGSMAHAFGSSG AFVLGDAVMSHHQRIGSYAYCFSASLPPYTARSVDEVLRILEEDNSSVTKLQKFSKLLHN EFLTDAKLPKYLEITSSPLSPILHLRLTPEFRYRKFGYSAEDLFCETMHQQKLVATTRYI EPYEQEERFLQKIVDRLLVESGLLITRNIIVVRQESLPFLPSLKICVNSGLQESDIVESC KSIKQVLVETCSE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/ZYRO/ZYRO0D07282p