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Element type: CDS
Element length: 1380 nucleotides,
on anti-sense strand of
Yali0F: complement(3313759..3315138).
Other names:
YALI-CDS2712.1
YALI-IPF2085
Coding sequence: 460 codons.
Element length: 1380 nucleotides,
on anti-sense strand of
Yali0F: complement(3313759..3315138).
Other names:
YALI-CDS2712.1
YALI-IPF2085
Coding sequence: 460 codons.
Database cross references:
EMBL: CR382132
GeneID: 2907687
HOGENOM: Q6C0D0
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382132
GeneID: 2907687
HOGENOM: Q6C0D0
Homologs and Orthologs
Homologs in protein families: GL3C0576 GL3C0576.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0F25773p 
Protein domain map
Database cross references:
InterPro: IPR007312
KEGG: yli:YALI0F25773g
Pfam: PF04185
RefSeq: XP_505882.1
UniProtKB/TrEMBL: Q6C0D0
UniprotKB: Q6C0D0_YARLI
InterPro: IPR007312
KEGG: yli:YALI0F25773g
Pfam: PF04185
RefSeq: XP_505882.1
UniProtKB/TrEMBL: Q6C0D0
UniprotKB: Q6C0D0_YARLI
Sequence data
Nucleotide sequence
>YALI0F25773g.nt ACGCCTGTAGCAAGACAGATACCTCTCCAGTTGTCCTCGAGCTGGCCTACTTCGAAGAAG TCTACAGTTTTCCATGCTCTCATCCCCTCTTGCCCTCTGTCACGCGAGCATCTCCTCCAC CGCCCACTTCCAACGGGCACTAACCGTGAACCTTCTGCCAGAACGGCGCACCATGATAAC TATTAGTTGGTTCCATAGTGGCCCCCAACCGGACCAAAGCAATTTTTTTTTCATTAATGA TCCCTTGTGGATGTGCCAAGACCCTCCTTTCAGACCCACATGTTTTCCCCCTTCCATCGA CATAACAGGTTCTTCTTCAGTTACCAAACCTGGTATTCGCATCAGCTGCACCCGCGGAAG TGCCTCACGAGAGCCTTCCGTATCTCTGGGCCCGCATACTCTGTGCTAGTAAACAACCCC GTATGATTGCCAATCCACGTGTTGTAGAATGTACGGTCACCTCAGCGTTATAATCGAAGG TCCCTCTATAGCTACTTGAACCTATTACATATAGGTGGAGTCTGTTCCAAGCGTAAGTTG GTAACTGCTTCATCGTACAAACCGTATCATTTCAATCTTGATGGCCAGCGAGAACACAGA TTCCTCCCACGTGGAGATGAACCTTTACATCGTATCTAATGAAGCGACGATCATTGGCTG TGCCTGGGTTAGTCTTCGGGTTCGTGCCGCACGCGTGTGGCGTGTAGAGGGGTTGATCTG TCCGATACCTGGAGGAGGGGGGGCTGCGAAAACATACCTGCAAATAGCTGGACGTGATTG ATTCGTTTGGAAGCAAGAAACTACACATAAGTTACAGAACCACTCATCCACCTAGGCCTC TTGCTACCAAACTGTCGAGGCCAAGGTTCCGTAGAAAAACCCTATCGCTACAAACAGGCC TTGTTTACCGCTCATTTCCGACTCAAACAAAGACTGCCAAGACCTACATAATGCGCCAAG ATCCGTATCTCATCGCCAAGTGTCACTCCTCATACCTACAATGAAGCTCACCGTTCTGGC TCTCGCCTCCACTGTCGCCGCTGCTGGCTTCACTCCCGGTCTCGGAGAGACCCAGACTCA GGCTTTCACTGGAAACACCAAGACTCTGTACACCAACACTCCCGTGATCCCCTCCCAGAC CCCTGATCTGGCTGAGATCAAGGCTGCCGCTGCCACTGCCACTTCCAACTCTTTCAAGTC CAAGAAGACAGTTAAGGGTAAGGCTTTCGACAGATACCATCAGATCTGGCTGGAGAACAC TGACTACCAGAAGGCCTTTGACCAGGCCGGCCTCAAGGCTCTGACCAAGCAGGGTATCCT TCTCACTAACTATTTTGCTCTGACCCACCCCTCCGAGCCAAACTATGTTGCTGCTGTCGG TGGAGACTACTTTGGTATCTTCGATGACATTTACCGAACTCTTCCCGAGGAGATCTTCAC AGTTGCCGACCTGCTCGACTCCAAGTCCATCTCGTGGGGTGAGTACCAGGAGCATCAGCC CTACACCGGCTTCCAGGGCTTCAACTACTCTCGACAGACCGACTACGCCAACGACTACGT CCGAAAGCACAACCCCCTGGTCATGTACGACTCGGTTACTAAGAAGCCGGAGCGACTTGG TAACCTCAAGAACTTCACCGAGTTCCACAAAGATGTGGCTGACAAGGACCTCCCCCAGTG GGCCTTCATCACCCCCAACATGACAAACGACGGTCACGATACCGACATTGAGGTCTCTGG AACCTGGTCTTACAACTTCCTGTCCCCCCTCCTCAACAACACTGACTTCATGAAAGACAA CCTCATCATCCTGACCTTTGATGAGACAGAGACATACACCGAGCAGAACCGAGTTTTTGC TCTTCTGCTTGGAGGTGCCATCCCCGAGAACCTCAAGGGTACCACTGATGACACCGTCTA TAACCATTACTCTAACATTGCTACTGTTCAAGCTAACTGGGGGCTTCCCCATCTTGGACG AGGAGACGTCACTGCTAACGTCTTCAAATTCGTTGCCGACAAGATTGGTTCTTCTGTCAC CAACCACAACATCACCGAGCACGGTCTGTACAACAACTTTTCCTACCCCGGCTACTTCTC CGACAAGTCTCTTGGCTTCCCTACTCCTCTCATTAACGCTACTGGTACTTCCGGCAACAA GATTCTGCCAGCCATTGCTGATCTGGTCAAGTCTGGCAACTCCTCTGTCGCCAGCAACTC AACTGCAGGCCACAATGGCACTGCTACTGGCGCTAAGGCCTCCGGATCTGCCGGTGTAGC TGCTGCCAAGGGCTCTGTTTCCCACAACAAGAACGGTGCTGAAGCTGCCGTTGTTTCCCT TGGTGCCGCCCTGGTTGGTGTTGCCGCCCTTCTTCTTTAAAATGTTTCCATAGATTCAGT AACAAATTCTAATGAACAAGAACAAGTAAATTCTGTAGCTACTGTAGGCTGAGTGAATGA AGAATTGAATGAAGAATGGTGTAATGTTCGGATTATTCACACAAATTTGTTATTGGAAGT GCCGAGTGATGTACCCGCTTTCTCAGAGGAACTGTTCTTGTTAGCTGGCGAATTTTTGAA TGCCATATTAAGAAATGTACTGCGTACACTGCCGTTGTGTATAACACATATTTGACCTTC GGATTGTTCCACCTTTTGAATACGCTGTCATCATCAGTAT
Coding sequence
>YALI0F25773g.cds ATGAAGCTCACCGTTCTGGCTCTCGCCTCCACTGTCGCCGCTGCTGGCTTCACTCCCGGT CTCGGAGAGACCCAGACTCAGGCTTTCACTGGAAACACCAAGACTCTGTACACCAACACT CCCGTGATCCCCTCCCAGACCCCTGATCTGGCTGAGATCAAGGCTGCCGCTGCCACTGCC ACTTCCAACTCTTTCAAGTCCAAGAAGACAGTTAAGGGTAAGGCTTTCGACAGATACCAT CAGATCTGGCTGGAGAACACTGACTACCAGAAGGCCTTTGACCAGGCCGGCCTCAAGGCT CTGACCAAGCAGGGTATCCTTCTCACTAACTATTTTGCTCTGACCCACCCCTCCGAGCCA AACTATGTTGCTGCTGTCGGTGGAGACTACTTTGGTATCTTCGATGACATTTACCGAACT CTTCCCGAGGAGATCTTCACAGTTGCCGACCTGCTCGACTCCAAGTCCATCTCGTGGGGT GAGTACCAGGAGCATCAGCCCTACACCGGCTTCCAGGGCTTCAACTACTCTCGACAGACC GACTACGCCAACGACTACGTCCGAAAGCACAACCCCCTGGTCATGTACGACTCGGTTACT AAGAAGCCGGAGCGACTTGGTAACCTCAAGAACTTCACCGAGTTCCACAAAGATGTGGCT GACAAGGACCTCCCCCAGTGGGCCTTCATCACCCCCAACATGACAAACGACGGTCACGAT ACCGACATTGAGGTCTCTGGAACCTGGTCTTACAACTTCCTGTCCCCCCTCCTCAACAAC ACTGACTTCATGAAAGACAACCTCATCATCCTGACCTTTGATGAGACAGAGACATACACC GAGCAGAACCGAGTTTTTGCTCTTCTGCTTGGAGGTGCCATCCCCGAGAACCTCAAGGGT ACCACTGATGACACCGTCTATAACCATTACTCTAACATTGCTACTGTTCAAGCTAACTGG GGGCTTCCCCATCTTGGACGAGGAGACGTCACTGCTAACGTCTTCAAATTCGTTGCCGAC AAGATTGGTTCTTCTGTCACCAACCACAACATCACCGAGCACGGTCTGTACAACAACTTT TCCTACCCCGGCTACTTCTCCGACAAGTCTCTTGGCTTCCCTACTCCTCTCATTAACGCT ACTGGTACTTCCGGCAACAAGATTCTGCCAGCCATTGCTGATCTGGTCAAGTCTGGCAAC TCCTCTGTCGCCAGCAACTCAACTGCAGGCCACAATGGCACTGCTACTGGCGCTAAGGCC TCCGGATCTGCCGGTGTAGCTGCTGCCAAGGGCTCTGTTTCCCACAACAAGAACGGTGCT GAAGCTGCCGTTGTTTCCCTTGGTGCCGCCCTGGTTGGTGTTGCCGCCCTTCTTCTTTAA
Predicted translation product
>YALI0F25773g.aa MKLTVLALASTVAAAGFTPGLGETQTQAFTGNTKTLYTNTPVIPSQTPDLAEIKAAAATA TSNSFKSKKTVKGKAFDRYHQIWLENTDYQKAFDQAGLKALTKQGILLTNYFALTHPSEP NYVAAVGGDYFGIFDDIYRTLPEEIFTVADLLDSKSISWGEYQEHQPYTGFQGFNYSRQT DYANDYVRKHNPLVMYDSVTKKPERLGNLKNFTEFHKDVADKDLPQWAFITPNMTNDGHD TDIEVSGTWSYNFLSPLLNNTDFMKDNLIILTFDETETYTEQNRVFALLLGGAIPENLKG TTDDTVYNHYSNIATVQANWGLPHLGRGDVTANVFKFVADKIGSSVTNHNITEHGLYNNF SYPGYFSDKSLGFPTPLINATGTSGNKILPAIADLVKSGNSSVASNSTAGHNGTATGAKA SGSAGVAAAKGSVSHNKNGAEAAVVSLGAALVGVAALLL*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0F25773p