HomeYALI0F15345g
similar to uniprot|P40970 Saccharomyces cerevisiae YDR062w LCB2 Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1626 nucleotides,
on sense strand of
Yali0F: 2068653..2070278.
Other names:
YALI-CDS2017.1
YALI-IPF2004
Coding sequence: 542 codons.
Element length: 1626 nucleotides,
on sense strand of
Yali0F: 2068653..2070278.
Other names:
YALI-CDS2017.1
YALI-IPF2004
Coding sequence: 542 codons.
Database cross references:
EMBL: CR382132
GeneID: 2908658
HOGENOM: Q6C1K9
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382132
GeneID: 2908658
HOGENOM: Q6C1K9
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.N5Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0F15345p 
similar to uniprot|P40970 Saccharomyces cerevisiae YDR062w LCB2 serine C-palmitoyltransferase subunit
Protein domain map
Database cross references:
Gene3D: G3DSA:3.40.640.10
InterPro: IPR004839
InterPro: IPR015421
KEGG: yli:YALI0F15345g
Pfam: PF00155
RefSeq: XP_505453.1
UniProtKB/TrEMBL: Q6C1K9
UniprotKB: Q6C1K9_YARLI
Gene3D: G3DSA:3.40.640.10
InterPro: IPR004839
InterPro: IPR015421
KEGG: yli:YALI0F15345g
Pfam: PF00155
RefSeq: XP_505453.1
UniProtKB/TrEMBL: Q6C1K9
UniprotKB: Q6C1K9_YARLI
Gene Ontology terms
| GO:0030170 | pyridoxal phosphate binding |
| GO:0016769 | transferase activity, transferring nitrogenous groups |
| GO:0009058 | biosynthetic process |
Sequence data
>YALI0F15345g.nt ACGAGTACTGGGCTGTACTAAAAACAGCACTCTGACAATACTCTAACATCAGCAACAATT AATCAACACCGTCTTACATCAGATCAGCAACAATTACCCATTTCATCTTAGTCAGCAATT GGGGCCCCCACTCCAATGAACGCCCACTTAGGACTTCTCCATTTGCCTATGCAATGTGAG GCAAAAGTTGAAGGCAACCCGTTTGGTGCCCGTCTTGGGTTCGGCTCCACTTCGCGGCTG AAGACTAACAAAATTATGTCTATTGAGATCAACGTTCGCGGGGTTCTAATTATCACATGC TGCCATTCGCCTGCTTGTAGCTAGTGCTATTCATGCCTATTATCGACCCGACCGCGGAAG AATGTGACCAAAACCGCGCCCAGCGGACTTTTTATGGGCAAAAATCGGCTTCTCGGGTTC AATTCTCGGAACCCGCATTCGGCTGCAGGAGGTGCCAGGTACGCAGCAGGACGCGAGATA CAACCACGATCATCCACTACAACTACAACTACAACTACTCCCACTCGTAGTGTAGACCGG AGCAAGTTACACAGACAGAATCAGATTGTATATAGCCGAAATACGTCAACACCCCCCCTT CCCCCATCTATACATACCGGTTTGAGCACTCCTCAAATAACAGAGTTACGGTCCCAGTTC CACCACCAACTTGTCAACTCCAACTCCAGTCTCAGTCGCACACAAACCACCGCTTAAAGC CGCTATAGCCGACAGGACACAAACCGACCGCGGCCCCCATAGCGCTATATCACGTGACCA GCACCGAAGCCCGCCCCTTCGCCCTTCCGCCCGATCTCCGCCGCCACGTGTTCTTGTGTT TTCAGCGGGGCTTCCAGCGGGTGCTTTTTCCCACACCACCACCACACACCACTACGCTCC AACTCCCCCCTTAAAGTTTACGACACGTAAAAATTGCCTCTACGCATCACCTGGTACGTG ACAGTCTCTTACTCCCCCACACCACACCACCGTTGTTACAATGGCCTGCGAAACACAGCT GCTGGAAAAGGAGTTTGGTCGACTAACGTCGCCGGAGTACAAGTACAAGCAGAAGGTGCA GCCCAGCGAAAAAATCCGCCATGTCGAAGAAGAGGAGCCGGCCTACTACATGCTGCTGCT CACCTACCTGGGGTATCTGATTATGATTGTGTGTGGCCACGTGCAGGACTACTACGCCAA GGTGTTCCATCCCGAGACGGTGGCAGACTTCATGGCCAAGGACGGCTATGCGCCGCTGTT TTCCGACTTTGAGTCCTTCTACATCCGACGTCTGCAGAAGCGACTGCGAGACTGTTTCGG CCGAGTGGTCACGGGCGTCCCCGGACGATACATCACCGTGCTGGACCGAGTCTCTAACGA CTACAACACCACCTACAAGTACCTGGGCACCTCCACCGACTGTCTCAACCTGTCGTCGTA CAACTACCTTGGATTTGCCCAGTCCTCAGGCCAGTGCACAGACGCAGCCGAGGTTAGCAT CAACACAGAGGGAATCTCGTCCTTTGGCACCCGAGCCGTCTGCGGCACTCTGGACGCACA CGTCAAGACCGAAAAGCGTGTTGCCGAGTTTCTGGGTAAGGAGGACGCTCTCGTCTACTC CATGGGCTACGGCACCAACGCCTCGGTCTTCTCGTCGCTCGTCGACAAGCACTGTCTAGT GCTCTCTGACGCGCTCAACCACGGATCCATTCGATACGGCGCCCGTCTCTCTGGTGCCGT CATTAAAATCTTCAAACACAATGACACCAAGGACCTGGAACGAGTCCTGCGAGAACAGAT TTCGCAAGGCCAGCCCAAGACCCACCGACCCTGGAAAAAGATTCTCGTTGCCGTCGAGGG TCTGTACTCCATGGAGGGAACCATGACCGATCTGCCCACCATGTGCGATCTACGAGACAA ATACAAGTTCTACCTGTTTGTGGACGAAGCACACTCCATCGGAGCTCTGGGACCGCGAGG CAGAGGTATCTGCGACTACCTGGCCGTCGACCCCGCACGTGTGGACATCCTCATGGGCAC CTTCACCAAGTCGTTTGGCGCCACAGGAGGTTACATTGCGTCGTCGCACGAGCTAATCAA CCACCTGCGGGTCAACAACATGGGCAACGTGTACGCAGAGTCCGTGTCACCACCCGTTCT CGCACAGATCACAGCTGCCCTGCAGACGATTGACGGCGAGATTCGGCCTGGTGAGGGAGA GGAGCGTCTGGAACGTATCGCATTCAACTCGCGGTATCTCCGTCTGGCGCTCAAGCGGCT CGGTTTCATTGTCTACGGCATTGACGACTCGCCCATCATTCCGGTGCTCCTGTACGTGCC GGCCAAAATGCCTGAAATGGGCCGAATTCTGTTGAAGATGGGCATTGCCGTGGTGGTGGT GGGTTACCCTGCAACAGACATTGCGTCGTCACGGGCCCGGTTTTGCATGAGTGCCGCGCT GACCAAGGAAGATCTGGACCGAATCATTAAGGTCATGTGGCAGCTCGGCAACATTCTGTC CTTCAAGTATGGCAAGGGAATGCCTGATGCCAACGGCAAGGTGCGACATTGGGAGCTCAG CGAGGTTTTGGCCTCGGGCGTGGAGGACTGTAAGAAGGATTGGTAAGATATAGTAAATGT GCATATAGTTGGCAGTAATAATACGTGTGCATGTGTATGATTTGAAGGGGGGGGGGGGGG GGGGACCATTTCTGGGGGCCCATTAAAATCTGAGTAACATCTGACTGAGCTTTATATGCT TTATTTCTTCAGGTGCTACCCAGAACCAGAGACACCCTGAAACGGTTGACCTCTGTCAGT TAGTCAGCATTTTCTTCGCATCAGAATCGGCGGCATGGAGCCCACTGATGTTAGATTGCA TGTACATACTGTACCGGGCACCGTTCTCCGCGGCGTTCATCACCAT
>YALI0F15345g.cds ATGGCCTGCGAAACACAGCTGCTGGAAAAGGAGTTTGGTCGACTAACGTCGCCGGAGTAC AAGTACAAGCAGAAGGTGCAGCCCAGCGAAAAAATCCGCCATGTCGAAGAAGAGGAGCCG GCCTACTACATGCTGCTGCTCACCTACCTGGGGTATCTGATTATGATTGTGTGTGGCCAC GTGCAGGACTACTACGCCAAGGTGTTCCATCCCGAGACGGTGGCAGACTTCATGGCCAAG GACGGCTATGCGCCGCTGTTTTCCGACTTTGAGTCCTTCTACATCCGACGTCTGCAGAAG CGACTGCGAGACTGTTTCGGCCGAGTGGTCACGGGCGTCCCCGGACGATACATCACCGTG CTGGACCGAGTCTCTAACGACTACAACACCACCTACAAGTACCTGGGCACCTCCACCGAC TGTCTCAACCTGTCGTCGTACAACTACCTTGGATTTGCCCAGTCCTCAGGCCAGTGCACA GACGCAGCCGAGGTTAGCATCAACACAGAGGGAATCTCGTCCTTTGGCACCCGAGCCGTC TGCGGCACTCTGGACGCACACGTCAAGACCGAAAAGCGTGTTGCCGAGTTTCTGGGTAAG GAGGACGCTCTCGTCTACTCCATGGGCTACGGCACCAACGCCTCGGTCTTCTCGTCGCTC GTCGACAAGCACTGTCTAGTGCTCTCTGACGCGCTCAACCACGGATCCATTCGATACGGC GCCCGTCTCTCTGGTGCCGTCATTAAAATCTTCAAACACAATGACACCAAGGACCTGGAA CGAGTCCTGCGAGAACAGATTTCGCAAGGCCAGCCCAAGACCCACCGACCCTGGAAAAAG ATTCTCGTTGCCGTCGAGGGTCTGTACTCCATGGAGGGAACCATGACCGATCTGCCCACC ATGTGCGATCTACGAGACAAATACAAGTTCTACCTGTTTGTGGACGAAGCACACTCCATC GGAGCTCTGGGACCGCGAGGCAGAGGTATCTGCGACTACCTGGCCGTCGACCCCGCACGT GTGGACATCCTCATGGGCACCTTCACCAAGTCGTTTGGCGCCACAGGAGGTTACATTGCG TCGTCGCACGAGCTAATCAACCACCTGCGGGTCAACAACATGGGCAACGTGTACGCAGAG TCCGTGTCACCACCCGTTCTCGCACAGATCACAGCTGCCCTGCAGACGATTGACGGCGAG ATTCGGCCTGGTGAGGGAGAGGAGCGTCTGGAACGTATCGCATTCAACTCGCGGTATCTC CGTCTGGCGCTCAAGCGGCTCGGTTTCATTGTCTACGGCATTGACGACTCGCCCATCATT CCGGTGCTCCTGTACGTGCCGGCCAAAATGCCTGAAATGGGCCGAATTCTGTTGAAGATG GGCATTGCCGTGGTGGTGGTGGGTTACCCTGCAACAGACATTGCGTCGTCACGGGCCCGG TTTTGCATGAGTGCCGCGCTGACCAAGGAAGATCTGGACCGAATCATTAAGGTCATGTGG CAGCTCGGCAACATTCTGTCCTTCAAGTATGGCAAGGGAATGCCTGATGCCAACGGCAAG GTGCGACATTGGGAGCTCAGCGAGGTTTTGGCCTCGGGCGTGGAGGACTGTAAGAAGGAT TGGTAA
>YALI0F15345g.aa MACETQLLEKEFGRLTSPEYKYKQKVQPSEKIRHVEEEEPAYYMLLLTYLGYLIMIVCGH VQDYYAKVFHPETVADFMAKDGYAPLFSDFESFYIRRLQKRLRDCFGRVVTGVPGRYITV LDRVSNDYNTTYKYLGTSTDCLNLSSYNYLGFAQSSGQCTDAAEVSINTEGISSFGTRAV CGTLDAHVKTEKRVAEFLGKEDALVYSMGYGTNASVFSSLVDKHCLVLSDALNHGSIRYG ARLSGAVIKIFKHNDTKDLERVLREQISQGQPKTHRPWKKILVAVEGLYSMEGTMTDLPT MCDLRDKYKFYLFVDEAHSIGALGPRGRGICDYLAVDPARVDILMGTFTKSFGATGGYIA SSHELINHLRVNNMGNVYAESVSPPVLAQITAALQTIDGEIRPGEGEERLERIAFNSRYL RLALKRLGFIVYGIDDSPIIPVLLYVPAKMPEMGRILLKMGIAVVVVGYPATDIASSRAR FCMSAALTKEDLDRIIKVMWQLGNILSFKYGKGMPDANGKVRHWELSEVLASGVEDCKKD W*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0F15345p