HomeYALI0F12771g
some similarities with uniprot|Q12400 Saccharomyces cerevisiae YOL093W TRM10 tRNA methyltransferase, methylates the N-1 position of guanosine in tRNAs
Element type: CDS
Element length: 1116 nucleotides,
on sense strand of
Yali0F: 1710165..1711280.
Other names:
YALI-IPF1885
Coding sequence: 372 codons.
Element length: 1116 nucleotides,
on sense strand of
Yali0F: 1710165..1711280.
Other names:
YALI-IPF1885
Coding sequence: 372 codons.
Database cross references:
EMBL: CR382132
GeneID: 2908201
HOGENOM: Q6C1W9
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382132
GeneID: 2908201
HOGENOM: Q6C1W9
Homologs and Orthologs
Homologs in protein families: GL3R1757 GL3R1757.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0F12771p 
some similarities with uniprot|Q12400 Saccharomyces cerevisiae Chromosome XV reading frame ORF YOL093W
Protein domain map
Database cross references:
InterPro: IPR007356
InterPro: IPR016009
KEGG: yli:YALI0F12771g
PANTHER: PTHR13563
Pfam: PF01746
RefSeq: XP_505343.1
UniProtKB/Swiss-Prot: Q6C1W9
UniprotKB: TRM10_YARLI
InterPro: IPR007356
InterPro: IPR016009
KEGG: yli:YALI0F12771g
PANTHER: PTHR13563
Pfam: PF01746
RefSeq: XP_505343.1
UniProtKB/Swiss-Prot: Q6C1W9
UniprotKB: TRM10_YARLI
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>YALI0F12771g.nt CAGAAACGGTAAATCGTTCAGAAGCGGTAAATCGTTCAGAAACGCCGAATCGTTCAAGCC TGGTTTGCTACTCCGCTTCCGCCAGATCAGATAAAAACCTGAAGCCTGAACTTGACTGAC TTTGGTGTCTGACTGGGTCTCTTCAAGGCCAGGTGACTTAGTCTCAGGCTTAACATGGCC TGCTACAGCGAGTACGACCCGGTGCAACTAACCGAGATAGACTAGTGAGAGTGGCTACTC GTAGAGCGGTTTCAACTGGAAGGGTCTCCGAGTTCACAGATGAGAATGGTGGTTGTGGAA CATCCTTGCCGGTGCGAGTACCACTCAAGCTCATACAAGTATGGACACTACTGACGGAGG GCTTTGAGCTGACTTGGAAACGTCAGTAACACTTCAAAAGAATGACACTCTCTGTCGAGT TATGACTCAGTAAGAGACCTGTACAAGTACGATACCGGTACTTACTTGAGGTTTTGTTGA TGTGAGACTATACAGTATGTACAGCCCAACACTAGAAAGAGAAACTATCGACGTTGGCAC GATGTACGACCCGTGCAACAATGAAACCCCTTAGTACTGTGCGATATCAATACCAATTTT ATTATTATTTATTATTTATTATTATTTATTATTATTATTTATTATTGTAAAAACATAATA CATTAATCTACTCATACTGGCACTCCAGAGAACAATGTATATCTCATAAACAAATAGTTA AGCTTTTGTTAGACTACAAACGCTCGATACGATGCTACAACCACAACTCCATCATATAGT CTCTCCAACTAGCTCAATATTCATCTCATCTCCCTGGGAAAACAAGAAAATCGACAGCGG CTTACTCATCAACTTACAAATCATTCCAGATACATTTTTACCATTTATTTCAACTGTTTT TCCGTCAAATTACATCTCCCATCCCTTCCCCATTTAACTCGAGGTGCATATAATCGGCAT GAAAAATATATTTCACGGAATCTCTCAAAAATACACCACCATGGTAGACGTGACCGAGCC CGTTGCACCCGTCGAGGCAGTGAAGGAGACTGCCGGGGCCTCTAGCGCCACCCCCGAGGT AGATCGCACGTCCGAACCGCACCCCAAAAACCCCCAGAACGTGCCTGCTCCCTACAACAC CAAAACTGCCGTGATTCCCGAGGGCATGTCCAAAAACGAGTGGAAAAAGGCGCAGAAGAA GGCCATATGGGAGAGCAAGAAGGACGAGATTGCCGCCGTCAAGAAGGAGAAGAAAAAGGC GGCTCGAAAGAGAAAACAGCTCGCCATCAGCCGAGGCGAGATCCCCGCCCCCATCCCCCA GGATGAACGACCCCCCCAGACACAACTCCCCATTAGCATTGTTTTGGACTGCGGATTCGA CGAGATGATGACACAGAAGGAAAAGGTGTCGCTCAGTGCCCAGGTGGGCCGATGTTACAG CGCCAATCGAAAGGCCGATGCCAGGTTCGATCTCACCGTCAACTCGTTCAACAAGGGACT CAAGGACCGGTTCAACAACGAAATGAACAAGGTGCACGAGCTGTGGACCAACATCAAGTT TGTGGAGGACGACTACACTGTGCCCGAGGACGAGACCGCAAAGAGCAAACTGGTCTACCT ATCCTCAGACTCGGACAATGTCATCAACGAACTGGAGGACGGAAAAACATACATCATTGG CGGCATTGTCGACAAGGGACGGTACAAGAACCTGTGTCAGGACAAGGCTTCCAAGCAGGG TCTCCAGACCGGTCGTCTGCCCATCGCCGACTTCATCAAGCTATCGGGACGAAAGGTTTT GACCACCAACCACGTTTTTGAGATTCTGCTCAAGTGGACCGAGCTCAAGGACTGGAAGGC GGCGTTTGAAGCGGTGCTGCCCATGCGAAAACTTGACCCTGCCAACTACGGACGAGCCCA TCGACGAGCCCGAAAGAAGGCTCGTCTTGCAGAGGGAGCTGAGGGTAACGACGAAGAGGA TGATGAAGATGACGATGACGAGGAGGAGGAGGAGGAGGAGTCTGTCTCTGCCGAGCCCGA GGTGGTGGAGACAAAGGCTGAGGTCGAGACTGACACTGAGACCAAGGCTGAGACTGAGGC CGAAACTAAGGCTTAGGCATGTATTAATACTTTTTTATTCACCATTGACTGTACCTGTAG TGGGTGGTAGAAGAAGCAGTGTCGATAGAGGAGCCAAGAAAAGAAAAGAGAGACATATAG ATATCGTTGCAACGAGGGGATCACAATGAGAGCTCCAGAAGTCGTCCAACGGTTCTGTGG AAGCCTCCCGAAGCCCCACAAACGGCAGCTAGACTCAATTTCCATCGATAGTGACGATCA GATTGTACAAGGCGATACTAGACTTGAATTTCGAGTATGTGCAAGCCGGATGATTACTTT ATGTTTGTCGCTATCG
Coding sequence
>YALI0F12771g.cds ATGGTAGACGTGACCGAGCCCGTTGCACCCGTCGAGGCAGTGAAGGAGACTGCCGGGGCC TCTAGCGCCACCCCCGAGGTAGATCGCACGTCCGAACCGCACCCCAAAAACCCCCAGAAC GTGCCTGCTCCCTACAACACCAAAACTGCCGTGATTCCCGAGGGCATGTCCAAAAACGAG TGGAAAAAGGCGCAGAAGAAGGCCATATGGGAGAGCAAGAAGGACGAGATTGCCGCCGTC AAGAAGGAGAAGAAAAAGGCGGCTCGAAAGAGAAAACAGCTCGCCATCAGCCGAGGCGAG ATCCCCGCCCCCATCCCCCAGGATGAACGACCCCCCCAGACACAACTCCCCATTAGCATT GTTTTGGACTGCGGATTCGACGAGATGATGACACAGAAGGAAAAGGTGTCGCTCAGTGCC CAGGTGGGCCGATGTTACAGCGCCAATCGAAAGGCCGATGCCAGGTTCGATCTCACCGTC AACTCGTTCAACAAGGGACTCAAGGACCGGTTCAACAACGAAATGAACAAGGTGCACGAG CTGTGGACCAACATCAAGTTTGTGGAGGACGACTACACTGTGCCCGAGGACGAGACCGCA AAGAGCAAACTGGTCTACCTATCCTCAGACTCGGACAATGTCATCAACGAACTGGAGGAC GGAAAAACATACATCATTGGCGGCATTGTCGACAAGGGACGGTACAAGAACCTGTGTCAG GACAAGGCTTCCAAGCAGGGTCTCCAGACCGGTCGTCTGCCCATCGCCGACTTCATCAAG CTATCGGGACGAAAGGTTTTGACCACCAACCACGTTTTTGAGATTCTGCTCAAGTGGACC GAGCTCAAGGACTGGAAGGCGGCGTTTGAAGCGGTGCTGCCCATGCGAAAACTTGACCCT GCCAACTACGGACGAGCCCATCGACGAGCCCGAAAGAAGGCTCGTCTTGCAGAGGGAGCT GAGGGTAACGACGAAGAGGATGATGAAGATGACGATGACGAGGAGGAGGAGGAGGAGGAG TCTGTCTCTGCCGAGCCCGAGGTGGTGGAGACAAAGGCTGAGGTCGAGACTGACACTGAG ACCAAGGCTGAGACTGAGGCCGAAACTAAGGCTTAG
Predicted translation product
>YALI0F12771g.aa MVDVTEPVAPVEAVKETAGASSATPEVDRTSEPHPKNPQNVPAPYNTKTAVIPEGMSKNE WKKAQKKAIWESKKDEIAAVKKEKKKAARKRKQLAISRGEIPAPIPQDERPPQTQLPISI VLDCGFDEMMTQKEKVSLSAQVGRCYSANRKADARFDLTVNSFNKGLKDRFNNEMNKVHE LWTNIKFVEDDYTVPEDETAKSKLVYLSSDSDNVINELEDGKTYIIGGIVDKGRYKNLCQ DKASKQGLQTGRLPIADFIKLSGRKVLTTNHVFEILLKWTELKDWKAAFEAVLPMRKLDP ANYGRAHRRARKKARLAEGAEGNDEEDDEDDDDEEEEEEESVSAEPEVVETKAEVETDTE TKAETEAETKA*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0F12771p