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Element type: CDS
Element length: 2103 nucleotides,
on sense strand of
Yali0F: 1449289..1451391.
Other names:
YALI-CDS1159.1
YALI-IPF2092
Coding sequence: 701 codons.
Element length: 2103 nucleotides,
on sense strand of
Yali0F: 1449289..1451391.
Other names:
YALI-CDS1159.1
YALI-IPF2092
Coding sequence: 701 codons.
Database cross references:
EMBL: AJ001300
EMBL: CR382132
GeneID: 2907872
HOGENOM: O74935
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: AJ001300
EMBL: CR382132
GeneID: 2907872
HOGENOM: O74935
Homologs and Orthologs
Homologs in protein families: GL3C0456 GL3C0456.N5Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0F10857p 
uniprot|O74935 Yarrowia lipolytica POX2 Acyl-CoA oxidase 2 (EC 1.3.3.6)
Protein domain map
Database cross references:
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
HSSP: P07872
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0F10857g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_505264.1
UniProtKB/Swiss-Prot: O74935
UniprotKB: ACOX2_YARLI
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
HSSP: P07872
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0F10857g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_505264.1
UniProtKB/Swiss-Prot: O74935
UniprotKB: ACOX2_YARLI
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>YALI0F10857g.nt GATTCCGCCAAGTGAGACTGGCGATCGGGAGAAGGGTTGGTGGTCATGGGGGATAGAATT TGTACAAGTGGAAAAACCACTACGAGTAGCGGATTTGATACCACAAGTAGCAGAGATATA CAGCAATGGTGGGAGTGCAAGTATCGGAATGTACTGTACCTCCTGTACTCGTACTCGTAC GGCACTCGTAGAAACGGGGCAATACGGGGGAGAAGCGATCGCCCGTCTGTTCAATCGCCA CAAGTCCGAGTAATGCTCGAGTATCGAAGTCTTGTACCTCCCTGTCAATCATGGCACCAC TGGTCTTGACTTGTCTATTCATACTGGACAAGCGCCAGAGTTAAGCTTGTAGCGAATTTC GCCCTCGGACATCACCCCATACGACGGACACACATGCCCGACAAACAGCCTCTCTTATTG TAGCTGAAAGTATATTGAATGTGAACGTGTACAATATCAGGTACCAGCGGGAGGTTACGG CCAAGGTGATACCGGAATAACCCTGGCTTGGAGATGGTCGGTCCATTGTACTGAAGTGTC CGTGTCGTTTCCGTCACTGCCCCAATTGGACATGTTTGTTTTTCCGATCTTTCGGGCGCC CTCTCCTTGTCTCCTTGTCTGTCTCCTGGACTGTTGCTACCCCATTTCTTTGGCCTCCAT TGGTTCCTCCCCGTCTTTCACGTCGTCTATGGTTGCATGGTTTCCCTTATACTTTTCCCC ACAGTCACATGTTATGGAGGGGTCTAGATGGAGGCCTAATTTTGACGTGCAAGGGGCGAA TTGGGGCGAGAAACACGTCGTGGACATGGTGCAAGGCCCGCAGGGTTGATTCGACGCTTT TCCGCGAAAAAAACAAGTCCAAATACCCCCGTTTATTCTCCCTCGGCTCTCGGTATTTCA CATGAAAACTATAACCTAGACTACACGGGCAACCTTAACCCCAGAGTATACTTATATACC AAAGGGATGGGTCCTCAAAAATCACACAAGCAACGACGCCATGAACCCCAACAACACTGG CACCATTGAAATCAACGGTAAGGAGTACAACACCTTCACCGAGCCCCCCGTGGCCATGGC TCAGGAGCGAGCCAAGACCTCCTTCCCCGTGCGAGAGATGACCTACTTCCTCGACGGTGG CGAGAAGAACACCCTCAAAAACGAGCAGATCATGGAGGAGATTGAGCGAGACCCTCTTTT CAACAACGACAACTACTACGATCTCAACAAGGAGCAGATCCGAGAGCTCACCATGGAGCG AGTCGCCAAGCTGTCTCTGTTTGTGCGTGATCAGCCCGAGGACGACATCAAGAAGCGATT TGCTCTCATTGGTATCGCCGATATGGGAACCTACACCCGACTTGGTGTCCACTACGGCCT CTTCTTTGGCGCCGTCCGAGGTACCGGAACTGCCGAGCAGTTTGGCCACTGGATCTCCAA GGGAGCCGGAGACCTGCGAAAGTTCTACGGATGTTTCTCCATGACCGAGCTGGGCCATGG CTCCAACCTGGCTGGTCTCGAGACCACCGCCATCTACGATGAGGAGACCGACGAGTTCAT CATCAACACCCCTCACATTGCCGCCACCAAGTGGTGGATTGGAGGAGCCGCCCACACCGC CACCCACACTGTCGTGTTCGCCCGACTCATTGTCAAGGGCAAGGACTACGGTGTCAAGAC CTTTGTTGTCCAGCTGCGAAACATCAACGACCACAGCCTCAAGGTCGGTATCTCTATTGG TGATATCGGAAAGAAGATGGGCCGAGACGGTATCGATAACGGATGGATCCAGTTCACCAA CGTGCGAATCCCCCGACAGAACCTGCTCATGAAGTACACAAAGGTCGACCGAGAGGGTAA CGTGACCCAGCCTCCTCTGGCTCAGCTTACCTACGGTTCTCTTATCACTGGTCGAGTCTC CATGGCCTCTGATTCTCACCAGGTCGGAAAGCGATTCATCACCATTGCTCTGCGATACGC CTGCATTCGACGACAGTTCTCCACCACCCCCGGCCAGCCCGAGACCAAGATCATCGACTA CCCCTACCATCAGCGACGACTTCTGCCTCTTCTGGCCTATGTCTATGCTCTTAAGATGAC TGCCGATGAGGTTGGAGCTCTCTTCTCCCGAACCATGCTTAAGATGGACGACCTCAAGCC CGACGACAAGGCCGGCCTCAATGAGGTTGTTTCCGACGTCAAGGAGCTCTTCTCCGTCTC CGCCGGTCTCAAGGCCTTCTCCACCTGGGCTTGTGCCGACGTCATTGACAAGACCCGACA GGCTTGCGGTGGCCACGGTTACTCTGGATACAACGGTTTCGGCCAGGCCTACGCCGACTG GGTTGTCCAGTGCACCTGGGAGGGTGACAACAACATTCTCACCCTTTCTGCCGGCCGAGC TCTTATCCAGTCTGCCGTTGCTCTGCGAAAGGGCGAGCCTGTTGGTAACGCCGTTTCTTA CCTGAAGCGATACAAGGATCTGGCCAACGCTAAGCTCAATGGCCGATCTCTCACCGACCC CAAGGTCCTCGTCGAGGCCTGGGAGGTTGCTGCCGGTAACATCATCAACCGAGCCACCGA CCAGTACGAGAAGCTCATTGGCGAGGGTCTTAACGCCGACCAGGCCTTTGAGGTTCTGTC TCAGCAGCGATTCCAGGCCGCCAAGGTCCACACACGACGACACCTCATTGCCGCTTTCTT CTCCCGAATTGACACCGAGGCTGGCGAGGCCATCAAGCAGCCCCTGCTTAACCTGGCTCT GCTGTTTGCCCTGTGGTCCATCGAAGAGGACTCTGGTCTGTTCCTGCGAGAGGGCTTCCT CGAGCCCAAGGATATCGACACCGTCACCGAGCTCGTCAACAAGTACTGCACCACTGTGCG AGAGGAGGTCATTGGCTACACCGATGCCTTCAACCTGTCCGACTACTTCATCAACGCTCC TATTGGATGCTACGATGGTGACGCTTACCGACACTACTTCCAGAAGGTCAACGAGCAGAA CCCTGCCCGAGACCCCCGACCTCCTTACTACGCCTCTACTCTCAAGCCCTTCCTTTTCCG AGAGGAGGAGGATGATGACATTTGCGAGCTTGATGAGGAATAGACAAGCGGGTATTTATT GTATGAATAAAGATTATGTATTGATTGCAAAAAAGTGCATTTGTAGATGTGGTTTATTGT AGAGAGTACGGTATGTACTGTACGAACATTAGGAGCTACTTCTACAAGTAGATTTTCTTA ACAAGGGTGAAATTTACTAGGAAGTACATGCATATTTCGTTAGTAGAATCACAAAAGAAA TGTACAAGCACGTACTACTTGTACTCCACAATGTGGAGTGGGAGCAAAAAAATTGGACGA CACCGGAATCGAACCGGGGACCTCGCGCATGCTAAGCGCATGT
Coding sequence
>YALI0F10857g.cds ATGAACCCCAACAACACTGGCACCATTGAAATCAACGGTAAGGAGTACAACACCTTCACC GAGCCCCCCGTGGCCATGGCTCAGGAGCGAGCCAAGACCTCCTTCCCCGTGCGAGAGATG ACCTACTTCCTCGACGGTGGCGAGAAGAACACCCTCAAAAACGAGCAGATCATGGAGGAG ATTGAGCGAGACCCTCTTTTCAACAACGACAACTACTACGATCTCAACAAGGAGCAGATC CGAGAGCTCACCATGGAGCGAGTCGCCAAGCTGTCTCTGTTTGTGCGTGATCAGCCCGAG GACGACATCAAGAAGCGATTTGCTCTCATTGGTATCGCCGATATGGGAACCTACACCCGA CTTGGTGTCCACTACGGCCTCTTCTTTGGCGCCGTCCGAGGTACCGGAACTGCCGAGCAG TTTGGCCACTGGATCTCCAAGGGAGCCGGAGACCTGCGAAAGTTCTACGGATGTTTCTCC ATGACCGAGCTGGGCCATGGCTCCAACCTGGCTGGTCTCGAGACCACCGCCATCTACGAT GAGGAGACCGACGAGTTCATCATCAACACCCCTCACATTGCCGCCACCAAGTGGTGGATT GGAGGAGCCGCCCACACCGCCACCCACACTGTCGTGTTCGCCCGACTCATTGTCAAGGGC AAGGACTACGGTGTCAAGACCTTTGTTGTCCAGCTGCGAAACATCAACGACCACAGCCTC AAGGTCGGTATCTCTATTGGTGATATCGGAAAGAAGATGGGCCGAGACGGTATCGATAAC GGATGGATCCAGTTCACCAACGTGCGAATCCCCCGACAGAACCTGCTCATGAAGTACACA AAGGTCGACCGAGAGGGTAACGTGACCCAGCCTCCTCTGGCTCAGCTTACCTACGGTTCT CTTATCACTGGTCGAGTCTCCATGGCCTCTGATTCTCACCAGGTCGGAAAGCGATTCATC ACCATTGCTCTGCGATACGCCTGCATTCGACGACAGTTCTCCACCACCCCCGGCCAGCCC GAGACCAAGATCATCGACTACCCCTACCATCAGCGACGACTTCTGCCTCTTCTGGCCTAT GTCTATGCTCTTAAGATGACTGCCGATGAGGTTGGAGCTCTCTTCTCCCGAACCATGCTT AAGATGGACGACCTCAAGCCCGACGACAAGGCCGGCCTCAATGAGGTTGTTTCCGACGTC AAGGAGCTCTTCTCCGTCTCCGCCGGTCTCAAGGCCTTCTCCACCTGGGCTTGTGCCGAC GTCATTGACAAGACCCGACAGGCTTGCGGTGGCCACGGTTACTCTGGATACAACGGTTTC GGCCAGGCCTACGCCGACTGGGTTGTCCAGTGCACCTGGGAGGGTGACAACAACATTCTC ACCCTTTCTGCCGGCCGAGCTCTTATCCAGTCTGCCGTTGCTCTGCGAAAGGGCGAGCCT GTTGGTAACGCCGTTTCTTACCTGAAGCGATACAAGGATCTGGCCAACGCTAAGCTCAAT GGCCGATCTCTCACCGACCCCAAGGTCCTCGTCGAGGCCTGGGAGGTTGCTGCCGGTAAC ATCATCAACCGAGCCACCGACCAGTACGAGAAGCTCATTGGCGAGGGTCTTAACGCCGAC CAGGCCTTTGAGGTTCTGTCTCAGCAGCGATTCCAGGCCGCCAAGGTCCACACACGACGA CACCTCATTGCCGCTTTCTTCTCCCGAATTGACACCGAGGCTGGCGAGGCCATCAAGCAG CCCCTGCTTAACCTGGCTCTGCTGTTTGCCCTGTGGTCCATCGAAGAGGACTCTGGTCTG TTCCTGCGAGAGGGCTTCCTCGAGCCCAAGGATATCGACACCGTCACCGAGCTCGTCAAC AAGTACTGCACCACTGTGCGAGAGGAGGTCATTGGCTACACCGATGCCTTCAACCTGTCC GACTACTTCATCAACGCTCCTATTGGATGCTACGATGGTGACGCTTACCGACACTACTTC CAGAAGGTCAACGAGCAGAACCCTGCCCGAGACCCCCGACCTCCTTACTACGCCTCTACT CTCAAGCCCTTCCTTTTCCGAGAGGAGGAGGATGATGACATTTGCGAGCTTGATGAGGAA TAG
Predicted translation product
>YALI0F10857g.aa MNPNNTGTIEINGKEYNTFTEPPVAMAQERAKTSFPVREMTYFLDGGEKNTLKNEQIMEE IERDPLFNNDNYYDLNKEQIRELTMERVAKLSLFVRDQPEDDIKKRFALIGIADMGTYTR LGVHYGLFFGAVRGTGTAEQFGHWISKGAGDLRKFYGCFSMTELGHGSNLAGLETTAIYD EETDEFIINTPHIAATKWWIGGAAHTATHTVVFARLIVKGKDYGVKTFVVQLRNINDHSL KVGISIGDIGKKMGRDGIDNGWIQFTNVRIPRQNLLMKYTKVDREGNVTQPPLAQLTYGS LITGRVSMASDSHQVGKRFITIALRYACIRRQFSTTPGQPETKIIDYPYHQRRLLPLLAY VYALKMTADEVGALFSRTMLKMDDLKPDDKAGLNEVVSDVKELFSVSAGLKAFSTWACAD VIDKTRQACGGHGYSGYNGFGQAYADWVVQCTWEGDNNILTLSAGRALIQSAVALRKGEP VGNAVSYLKRYKDLANAKLNGRSLTDPKVLVEAWEVAAGNIINRATDQYEKLIGEGLNAD QAFEVLSQQRFQAAKVHTRRHLIAAFFSRIDTEAGEAIKQPLLNLALLFALWSIEEDSGL FLREGFLEPKDIDTVTELVNKYCTTVREEVIGYTDAFNLSDYFINAPIGCYDGDAYRHYF QKVNEQNPARDPRPPYYASTLKPFLFREEEDDDICELDEE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0F10857p