HomeYALI0F05698g
weakly similar to uniprot|P32849 Saccharomyces cerevisiae YLR032w RAD5 DNA helicase proposed to promote replication fork regression during postreplication repair by template switching
Element type: CDS
Element length: 3078 nucleotides,
on sense strand of
Yali0F: 845348..848425.
Other names:
YALI-CDS0408.1
YALI-IPF1649
Coding sequence: 1026 codons.
Element length: 3078 nucleotides,
on sense strand of
Yali0F: 845348..848425.
Other names:
YALI-CDS0408.1
YALI-IPF1649
Coding sequence: 1026 codons.
Database cross references:
EMBL: CR382132
GeneID: 2907973
HOGENOM: Q6C2R8
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382132
GeneID: 2907973
HOGENOM: Q6C2R8
Homologs and Orthologs
Homologs in protein families: GL3C0553 GL3C0553.N2Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0F05698p 
weakly similar to uniprot|P32849 Saccharomyces cerevisiae YLR032w
Protein domain map
Database cross references:
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
InterPro: IPR014905
KEGG: yli:YALI0F05698g
PROSITE: PS00518
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
Pfam: PF08797
RefSeq: XP_505044.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/Swiss-Prot: Q6C2R8
UniprotKB: RAD5_YARLI
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
InterPro: IPR014905
KEGG: yli:YALI0F05698g
PROSITE: PS00518
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
Pfam: PF08797
RefSeq: XP_505044.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/Swiss-Prot: Q6C2R8
UniprotKB: RAD5_YARLI
Gene Ontology terms
None available yet
Sequence data
>YALI0F05698g.nt TAGCTCCATATCTGGACTGAGAAGTTTCATGAAGAGTCCAAGAAGCTGATCCCATTAGAT TGCCCGGTTGAAAAATCAGGTTTTTCAAGCTTCTTTTGGTCTTGAAGTAATCGAGTTAGA AAAAGAAGTACTGGTGTGGATAGTAAAGGGAAAGACTGGAAGTACTCGTCTCCCACTACT GCTACGGAGTATCTGACTTGTAGTCTAGGTCAGAGTACAAACTTCATGGCTTCACGGAGT TGAGAGAGTTATTTTGGAGCGAGATATATACTCATCTGTCATTCACAACTGTTAGTACTA ACTGTTGTTTCAAGTTTTCCAAGTTCTACAGTAGAAGACAAGTTCTATTGGTATCGTCGT TCTGGAGTTGTCTGTTGTAGCTGGAACGTGGATTGTTAGAGATTCAAGTAAGGTAGAATA TTTTTAGATATGTGGTTTCGACAGACTGTGTATTGAAAGATTTTCTTTACAAATCTCATA TCGGAGTCTCTATCTGGATATGTTTCATGAGATGGGCAATCAGTGCACATGCGAAGATAC TACTGCGAGATTGTCTTAAATATTCATGATGTGGTGATTGAAAACTGTTGGTTATATCAT TGTAGCTCCAAGCAATAATGTCAGCCATTTTTTCCAGTACTTTGGTCGTTTTTATGCGTA CCATCAATCAACGACCAATTCGACAGAAAATACTATCATTTAGATATTTATCTTTTTTCA CAATTTATTTTTATTTGCATCACTACACCTGCACCTCTGAACCTAATCACAAAAGCCATG CTAACCAGACCCACTATAAGACCTTGTATTTAGTCCAAATTCGCCCCTAAAACTTCTCAG AATATACCTTTGAGTTAGTACAATCATTCTATTGGAAATTTCTGTTCTCATCGGCTCCGC TGCTCTTTTCACAGCCATTTTCCGACCCCCACTTTGCTCCCATGCACGCCACCCAAATTA AAACACGTCTGACGCGTCTCCAATCCCACACCACTTCAAAATGGAACCCAGGCAAAAAAA AGCCCGGTTTTTCGACTCTGAGGAGGACTTTGGCCCGGACACAAAGTCGCTGATTCGCCC CGGAAGCTCACACAAGCCTGGCAAGCCTGCCAGCAACTCTCTGGCTCGACCCACGCCTGC TCCATCGACTTTTCGATCTGATCTCGAGGCGTTTCTGGGGCCTCTTTCGGACCAACGGTT CGGTTTGTTGCTTGCAAAGAGCAAGGGAAATGTCGAACAGGCAGTCAATATCCATTTTGA TCTGCCAGAGGAGGTGCAACAAGCGACATCGGAGGAGACGGCGGAAGAGGCGGAAGTGTC TCAAACGACCACCAGCGGCTTTGAGACGACACAAAAGCCCTCCCAAAACACACAGGTGCC TTCTAGAGTCCACACAAGAGGTGGTTGTTCGACTAGTCGTTTCATTGGTTCACTAGTGGT CACGGCATGGGCTTCTAAGTCTTCCAAGGGCAAAGTCAAGTACCAAGACAGACTCGTGGT GGAGCGCCAGTCCCACGACCATTCGAAATCGATCCGGAAGAATCCCACCGACAACTCGCA TGTGCACATTCGCACTGTGTCTGGAGAACTTCTGGGGCGCATTTCTGGCGAGCACGACTA CTCCATAGCATCTCTGATTGACAGTCGGGTGTGCGACTTTGAGGCGTCGTGTGTTTACGC TGACCACAATCTGAGTCTGGGCTCGAATTTCGTCGTTGAACTGAAATGCTACCTCACCGA AGAAGCGTTCCAGGACGTGGCTATGCCGTTGCTTGACAGCAAGACGGCCAAGAAACGGGA GTATGTGTTTGACAACTCGCGGGAGAGTCACGTGGAGAAGATGCTGCGCAACCGCCAAAT CGCCATTGTCGATCTCTTCGGCAAGCTCAATCTTATCAAAGAAAATGAAGCCAACGCAGA TATGGTCAAGGACATGCTGAGGGCCAAAAGCCAGCCGCCCTCCAGTCAACCGCCCTCTCA GAACTCAGAGGACGAAAGTGAACCTATTCCCACCGACGAGCTGGATGCCCTTTACAAACG AATCGAAAAGGAGGACGTGGAACAGCCAGAAACAGAGGTGGAGGGGTTCCCTCTAGAGTT GAGAAGATACCAGAAACAGGGATTGACGTGGATGATATCAAGGGAGACGGAGGTGAGCGA GTATTTTGACAATGACGACTCCGGACCTATAAACCCATTATGGACGAAAGTGGACTTTCC GGGAAGTGACGAAAAGTTCTATGTGAACTTTTCATCCGGTGCTCTGACTCTCAAGTTCCC TAAACAAGAAAGGTCCTTCTCAGGAGGCATTCTGGCCGACGAAATGGGTCTAGGAAAGAC TATCTCGACGCTTGCCATGGTATACAGAGACCGGCACGTGGGATGCACGTTGGTGGTGGC CCCCATGTCGTTGCTATGGCAGTGGGAACAAGAATGTGAACGAGTTGGTCTGTCGACTTA TGTATACCATGAAAAGGGAGCCGATATTGATTTGGATGAGTTGTTCAAAACGTACAGCCC TAACATTCTGATCACGTCATATCACACCCTGGTGTCTCACTATGGTCAGATCAAAGCTCT AGGAGGAGGGCTGGATCGCAACGTCATTTCTGAAACCAGTTCGCATGAGAGACCAAAGAT TTTCACCAAGCATTTCCACCGAATCGTGCTAGATGAGGCACACGTGATCAAAAACAGAAA TACCGTCTCGGCAAAGGCATGCTGTCTTTTGAGGGCTACCAACAAGTGGGCTCTGACCGG TACTCCTATTCACAACCGTCTGGAGGACCTCTTTTCGATTCTGAAGTTCCTGGGAGCAGC TCCATGGAACGATTTCATCTACTGGCGCAATTTCATCACTCTGCCGTTCCAGGAGGGTAA AATTGTCTCTGCTCTAATGACTGTTCAGTGCATTTTGGAGCCCATAGTGTTGAGACGAAC CAAGAACATGAAACAGGCTGATGGAAGTCCTCTGGTAGTGTTACCCAAGAAGACGATCAA CATTGAGAAGGTGGCATTGACCGACCAGGAGAGAGTCATCTACAGCTATGTTCTTGCACG AGCTCAGACGTCTCTTCAAAAGTCTGAAGCATCTGAGGCTGTGGGACGCAACTATCTGAA CATTTTGACCCAGATTTTACGTCTTAGACAGTCGTGCTGTGATCCAGCGTTGATTTTGCG CCCGGAAGCCGAAGTGCCCACCGACGAGCAGCTTCAGATTGAAGAAAACGAGTCTCAACT CAAGAGCATGATTCAACAATATAATGACGATACTCAGACATCCGCCTGCGAGTATTCGTC TGAGATTATCGCGCAATTACAGGACCAATCGGCTCCTCCAGAGTGTCCCATCTGTGCTGA AGACGTGACCAAGCTGGCCATCTCAAAATGTCTACATATGGGATGTGTGGACTGTCTGGC TGACAATGTTCGGTTCCAGGAGAGCAAGAAGCAGACGCCGGTATGCTGTATATGTCGTCA GCCTGCCGCTCTGAAAGATATATTCGAAGTAGAGAGAACAGGGGAAGATTGCAAGGATAT CCGCTTGAAGAAGTTATCTGACAGACCACGCTCTTCCAAGCTCGTTGCTCTGGTTTCCAA GCTCAAGCAGCTCCCTAAAGACGCCAAATCCGTCGTCTTTTCGCAGTTCACAAGCTACCT AGACATCATCCAGACTGAACTGCGTCGTGAAAAGATCCAGGCTTTCAGATTTGATGGTAC CTTGTCCAGACAGCAGAGGACCGACGTTCTCAAGGCGTTCGGACTTTCCAAGGGCTCGGT GCTTCTGATCTCGCTCAAAACTGGAGGGGTGGGTCTGAATCTGGTCACTGCCAACCATGC CTTTATCATGGACCCCTGGTGGACGTTTGCACAGGAGGCTCAGGCCATTGACCGAATCCA TCGAATGGGACAGACGAAAGACGTGCACGTGACTCGGTTCATTGTGGAGAACTCTGTCGA GGAGAAGATGTTGAAGATCCAGCAACAGAAGATGGTTTTGGCGGGTACGTTGGGTATGTC TGAGCAGGAACAGAAGGCTCAGAGAATCGAGAACATTAAGACTCTGTTGGGGGAGTAATG GAGTACCCCACGTACAGAATGGTGATGATGATGGTGATTGTTACGGTGATGGTGACGGTG ATGATGGTAATGGTACCGAGTTGCCGGAGATGTGGAGATGTACATACTAATGTGATTTAT AGATTGATCGAAACGTGAAGTTTTGTTCTCAGTTGCAATCAATGGCTGTTCATGTTGATG TCTGTGACTCAATAGTCGGGAAACCCCTGGACATACTGTATCTGAATGTACAGTATAAAG TGAGCAATTCCGACATCCTGACGGAGTGGTCTAATAAAAACATATTGATGGACTATTT
>YALI0F05698g.cds ATGGAACCCAGGCAAAAAAAAGCCCGGTTTTTCGACTCTGAGGAGGACTTTGGCCCGGAC ACAAAGTCGCTGATTCGCCCCGGAAGCTCACACAAGCCTGGCAAGCCTGCCAGCAACTCT CTGGCTCGACCCACGCCTGCTCCATCGACTTTTCGATCTGATCTCGAGGCGTTTCTGGGG CCTCTTTCGGACCAACGGTTCGGTTTGTTGCTTGCAAAGAGCAAGGGAAATGTCGAACAG GCAGTCAATATCCATTTTGATCTGCCAGAGGAGGTGCAACAAGCGACATCGGAGGAGACG GCGGAAGAGGCGGAAGTGTCTCAAACGACCACCAGCGGCTTTGAGACGACACAAAAGCCC TCCCAAAACACACAGGTGCCTTCTAGAGTCCACACAAGAGGTGGTTGTTCGACTAGTCGT TTCATTGGTTCACTAGTGGTCACGGCATGGGCTTCTAAGTCTTCCAAGGGCAAAGTCAAG TACCAAGACAGACTCGTGGTGGAGCGCCAGTCCCACGACCATTCGAAATCGATCCGGAAG AATCCCACCGACAACTCGCATGTGCACATTCGCACTGTGTCTGGAGAACTTCTGGGGCGC ATTTCTGGCGAGCACGACTACTCCATAGCATCTCTGATTGACAGTCGGGTGTGCGACTTT GAGGCGTCGTGTGTTTACGCTGACCACAATCTGAGTCTGGGCTCGAATTTCGTCGTTGAA CTGAAATGCTACCTCACCGAAGAAGCGTTCCAGGACGTGGCTATGCCGTTGCTTGACAGC AAGACGGCCAAGAAACGGGAGTATGTGTTTGACAACTCGCGGGAGAGTCACGTGGAGAAG ATGCTGCGCAACCGCCAAATCGCCATTGTCGATCTCTTCGGCAAGCTCAATCTTATCAAA GAAAATGAAGCCAACGCAGATATGGTCAAGGACATGCTGAGGGCCAAAAGCCAGCCGCCC TCCAGTCAACCGCCCTCTCAGAACTCAGAGGACGAAAGTGAACCTATTCCCACCGACGAG CTGGATGCCCTTTACAAACGAATCGAAAAGGAGGACGTGGAACAGCCAGAAACAGAGGTG GAGGGGTTCCCTCTAGAGTTGAGAAGATACCAGAAACAGGGATTGACGTGGATGATATCA AGGGAGACGGAGGTGAGCGAGTATTTTGACAATGACGACTCCGGACCTATAAACCCATTA TGGACGAAAGTGGACTTTCCGGGAAGTGACGAAAAGTTCTATGTGAACTTTTCATCCGGT GCTCTGACTCTCAAGTTCCCTAAACAAGAAAGGTCCTTCTCAGGAGGCATTCTGGCCGAC GAAATGGGTCTAGGAAAGACTATCTCGACGCTTGCCATGGTATACAGAGACCGGCACGTG GGATGCACGTTGGTGGTGGCCCCCATGTCGTTGCTATGGCAGTGGGAACAAGAATGTGAA CGAGTTGGTCTGTCGACTTATGTATACCATGAAAAGGGAGCCGATATTGATTTGGATGAG TTGTTCAAAACGTACAGCCCTAACATTCTGATCACGTCATATCACACCCTGGTGTCTCAC TATGGTCAGATCAAAGCTCTAGGAGGAGGGCTGGATCGCAACGTCATTTCTGAAACCAGT TCGCATGAGAGACCAAAGATTTTCACCAAGCATTTCCACCGAATCGTGCTAGATGAGGCA CACGTGATCAAAAACAGAAATACCGTCTCGGCAAAGGCATGCTGTCTTTTGAGGGCTACC AACAAGTGGGCTCTGACCGGTACTCCTATTCACAACCGTCTGGAGGACCTCTTTTCGATT CTGAAGTTCCTGGGAGCAGCTCCATGGAACGATTTCATCTACTGGCGCAATTTCATCACT CTGCCGTTCCAGGAGGGTAAAATTGTCTCTGCTCTAATGACTGTTCAGTGCATTTTGGAG CCCATAGTGTTGAGACGAACCAAGAACATGAAACAGGCTGATGGAAGTCCTCTGGTAGTG TTACCCAAGAAGACGATCAACATTGAGAAGGTGGCATTGACCGACCAGGAGAGAGTCATC TACAGCTATGTTCTTGCACGAGCTCAGACGTCTCTTCAAAAGTCTGAAGCATCTGAGGCT GTGGGACGCAACTATCTGAACATTTTGACCCAGATTTTACGTCTTAGACAGTCGTGCTGT GATCCAGCGTTGATTTTGCGCCCGGAAGCCGAAGTGCCCACCGACGAGCAGCTTCAGATT GAAGAAAACGAGTCTCAACTCAAGAGCATGATTCAACAATATAATGACGATACTCAGACA TCCGCCTGCGAGTATTCGTCTGAGATTATCGCGCAATTACAGGACCAATCGGCTCCTCCA GAGTGTCCCATCTGTGCTGAAGACGTGACCAAGCTGGCCATCTCAAAATGTCTACATATG GGATGTGTGGACTGTCTGGCTGACAATGTTCGGTTCCAGGAGAGCAAGAAGCAGACGCCG GTATGCTGTATATGTCGTCAGCCTGCCGCTCTGAAAGATATATTCGAAGTAGAGAGAACA GGGGAAGATTGCAAGGATATCCGCTTGAAGAAGTTATCTGACAGACCACGCTCTTCCAAG CTCGTTGCTCTGGTTTCCAAGCTCAAGCAGCTCCCTAAAGACGCCAAATCCGTCGTCTTT TCGCAGTTCACAAGCTACCTAGACATCATCCAGACTGAACTGCGTCGTGAAAAGATCCAG GCTTTCAGATTTGATGGTACCTTGTCCAGACAGCAGAGGACCGACGTTCTCAAGGCGTTC GGACTTTCCAAGGGCTCGGTGCTTCTGATCTCGCTCAAAACTGGAGGGGTGGGTCTGAAT CTGGTCACTGCCAACCATGCCTTTATCATGGACCCCTGGTGGACGTTTGCACAGGAGGCT CAGGCCATTGACCGAATCCATCGAATGGGACAGACGAAAGACGTGCACGTGACTCGGTTC ATTGTGGAGAACTCTGTCGAGGAGAAGATGTTGAAGATCCAGCAACAGAAGATGGTTTTG GCGGGTACGTTGGGTATGTCTGAGCAGGAACAGAAGGCTCAGAGAATCGAGAACATTAAG ACTCTGTTGGGGGAGTAA
>YALI0F05698g.aa MEPRQKKARFFDSEEDFGPDTKSLIRPGSSHKPGKPASNSLARPTPAPSTFRSDLEAFLG PLSDQRFGLLLAKSKGNVEQAVNIHFDLPEEVQQATSEETAEEAEVSQTTTSGFETTQKP SQNTQVPSRVHTRGGCSTSRFIGSLVVTAWASKSSKGKVKYQDRLVVERQSHDHSKSIRK NPTDNSHVHIRTVSGELLGRISGEHDYSIASLIDSRVCDFEASCVYADHNLSLGSNFVVE LKCYLTEEAFQDVAMPLLDSKTAKKREYVFDNSRESHVEKMLRNRQIAIVDLFGKLNLIK ENEANADMVKDMLRAKSQPPSSQPPSQNSEDESEPIPTDELDALYKRIEKEDVEQPETEV EGFPLELRRYQKQGLTWMISRETEVSEYFDNDDSGPINPLWTKVDFPGSDEKFYVNFSSG ALTLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDRHVGCTLVVAPMSLLWQWEQECE RVGLSTYVYHEKGADIDLDELFKTYSPNILITSYHTLVSHYGQIKALGGGLDRNVISETS SHERPKIFTKHFHRIVLDEAHVIKNRNTVSAKACCLLRATNKWALTGTPIHNRLEDLFSI LKFLGAAPWNDFIYWRNFITLPFQEGKIVSALMTVQCILEPIVLRRTKNMKQADGSPLVV LPKKTINIEKVALTDQERVIYSYVLARAQTSLQKSEASEAVGRNYLNILTQILRLRQSCC DPALILRPEAEVPTDEQLQIEENESQLKSMIQQYNDDTQTSACEYSSEIIAQLQDQSAPP ECPICAEDVTKLAISKCLHMGCVDCLADNVRFQESKKQTPVCCICRQPAALKDIFEVERT GEDCKDIRLKKLSDRPRSSKLVALVSKLKQLPKDAKSVVFSQFTSYLDIIQTELRREKIQ AFRFDGTLSRQQRTDVLKAFGLSKGSVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEA QAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQQKMVLAGTLGMSEQEQKAQRIENIK TLLGE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0F05698g