HomeYALI0F01232g
similar to uniprot|P31244 Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair
Element type: CDS
Element length: 2535 nucleotides,
on anti-sense strand of
Yali0F: complement(202194..204728).
Other names:
YALI-CDS0736.1
YALI-IPF806
Coding sequence: 845 codons.
Element length: 2535 nucleotides,
on anti-sense strand of
Yali0F: complement(202194..204728).
Other names:
YALI-CDS0736.1
YALI-IPF806
Coding sequence: 845 codons.
Database cross references:
EMBL: CR382132
GeneID: 2908216
HOGENOM: Q6C3A7
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382132
GeneID: 2908216
HOGENOM: Q6C3A7
Homologs and Orthologs
Homologs in protein families: GL3C0553 GL3C0553.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0F01232p 
similar to uniprot|P31244 Saccharomyces cerevisiae YBR114W DNA repair protein RAD16
Protein domain map
Database cross references:
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR002464
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
KEGG: yli:YALI0F01232g
PROSITE: PS00518
PROSITE: PS00690
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00097
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_504855.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6C3A7
UniprotKB: Q6C3A7_YARLI
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR002464
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
KEGG: yli:YALI0F01232g
PROSITE: PS00518
PROSITE: PS00690
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00097
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_504855.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6C3A7
UniprotKB: Q6C3A7_YARLI
Gene Ontology terms
| GO:0008270 | zinc ion binding |
| GO:0005524 | ATP binding |
| GO:0005515 | protein binding |
| GO:0004386 | helicase activity |
| GO:0003677 | DNA binding |
Sequence data
>YALI0F01232g.nt ATAAATTTCTAACCAGAAAGAGGACAATGAGAGATTGTCAATAATGCAACTTTTGAAAAG TATTTCCATACAATAATTCATTTTATTGCTGTATGTCGAATGATGAAGACTCAGCCTAAT ACTTAGACTTTGTTTAGACAGAATTTGGAATCATTCGAACAACCGAGGAAGGTACGTGAA TAACGAAAATTCCGCGAATGGGTTTGGAAATGCTCATATATCACAATATTCTAGGTTACA GAACATTCAACTTCTCTTCGTGAAGTTATAGCACACCCTTGTCTCTGGTCTGGTATTAGC ACACAGCACCAAAACACTCTGGTGAGGACAAACACTGTATAATCTGCTCAATTGGTTCAA TACTGCACATATCTGTGTCCCCAAGGTAACCCACGACACGATACTACAGTATTATTTGTA TCAGTTGAATCCTAGGTTGAATGAACTCCTATAGGCTGTTATTTTCCATCGCCCATTGTC AAGTCAAAAGTGCGCATCTTTGATGTACTTATAGCCATGATCCCTATGTGTACACTGCTA ACCGCCCTTATGAGTGATGCGACTAAGCCGCAAGAACCCGACACAAGAATATATATATAT ATATATATTAATCAGCTTAATTTCCCGTAATTTTCTCGATTTTATCCGTATTTTGTGTCT TTTTTCCTACTGTTCTTCCACCCGTCTATGCTCAACTGTGATGCGGCTCGGTGGCGAAAT TTCATATATCATTTTAACATCAAATTACAATGCCGTAGAAGCAGCTGAGACAAATTGAAA AACGGGATGGAGTTCCGAAATACACCACAAGACCGAAAAAATCGGTTTAAAATGTTCTTC TGTCCTTTCCACCGCGTCCCGGAGATATCGGAGTTAATCAGTGCCCAAATAGGCACTGTA AGCTTAAAGTGACCGATCCAAATTTCAGTTGGGAACTTTTCTTATCGTGCAGTGCATCTC AGCATCTCAAGCCCGCTGCACACCTCTCCGACACAAGACCATGACAGTATCCGGCGACCT TTCCAGCGAAGACGGCGGCGGATTTGTGGTCAGCGACGCCAGTCCAGCCCCCGAAGCGCC CAAGAAGGAAACAAAACTGCCGACGTTCAAGCGGAAGCCGAGGACCGCTGCAACTAACAA GGCCCAGCTCAAGGAGTTCGATGACGAGGGTAATGAGGTGGTTCAGGACCCATCCAAGAC CAGATCTGCTTCAAGTCAGGAGCCGGCTGCCGCGCCTAAGAGACGTGGCCGTTCCAGAGC CGTTATTGATGACAATAGCGAGGCTTCTTCGTCGTCGTCGCTCGCTACACGAGCTAAAGT CGCCACCCGATCCCGAGCCACAAAGCCAAAGGCGACACGCAAGCGGGCAATAGTGGTGAG TGACGACTCTTCCGGTGATGAGTATAAGGCCAGCGATGAGTCTGATCGAGAACAGGCCGT GGAAGATGGAGGGTTTATGATTGCGGATGATCTGGAGGAGGGCGAAGAAGAGAAACCCAA AAAGAGAAGAGCTCCAGCTAAAAAGAAAGCCAAGAAGGACGACTACGATGAGCTGGATGA AGACGGAAACAAAAAACCCCGGTATCTCAAATACTACGACCGGACTACCAAGGCTTTGTT TGAACAGCATCCTGAGTTGGAGAACACCTTTATTGATCTCGACAATAAACCGAGGATCCA GGTTGAAAAGGCCGAACAGCCAAAGTCTATGGCTGTAACTCTGCTGCCGTTTCAACAAGA GGGTCTCAACTGGCTTTTGAAGCAGGAGGAGGGAGAATACAAGGGCGGTATTCTTGCTGA TGAAATGGGAATGGGTAAAACTATCCAGACGATTGCCTTGATCATCGCCTCGGGAGTCAA GCCCAACCTCATTGTCGCCCCTACCGTTGCTCTGATGCAATGGGCCAATGAAATTAACGA CCATTCTGCGGGCTCTCTCAAAGTGGCTGTTTACCATGGAGCCAACAAAGATTCATTCTC TGTGAAAGATCTGGAGGGCTACGACTGTGTGATGACGACCTATGCGGTTCTAGAGAGCGT TTACCGACGTCAACAGAGCGGTTTTGTGCGCAAGGGAGTCGAGGGAAAGCAGTACAAAAA GTCTCCTTTGCATCAAGTTCAATGGGGAAGAGTTGTGCTAGATGAGGCTCATAATATCAA GGATCGGGCAAGTAACACCGCCAGAGCCGCCTTCAATCTCAATACCGAGAAACGGCTTTG TCTCTCTGGCACTCCTCTTCAGAACCGAATCGGTGAAATGTTTTCGCTGATTCGGTTCCT CGGAATCAAACCGTTCTGCGAGTATTTTTGCAAAAAATGCCCCTGCCGATCTCATGACTG GAGCTTTGTCAACAACCGAACATGTGTCACGTGCGGGCATCGACCCATGGACCACACAAA CTACTTCAACCACGTGCTCTTGAAACATATCCAGAAGGGAGGTATCAGCAAAGAAGGCAA GGAGAGCTTCGGCAACATCCAGAAACTGCTCAAGCACATTATGCTGCGTCGAACCAAGGT CGAGAGAGCAGATGATCTCGGTCTACCCCCTAGAATCGTCACTATTCGACGGGACTTTTT TAACGAGGAGGAGAAAGACCTCTACCAGAGTATCTACTCGGACGTGAACCGGAAATTCAA CACCTATGTGGCACAGGGAGTGGTTCTCAACAACTATGCCAACATTTTCTCTCTGATTAC TCGAATGAGACAGATTGCAGATCATCCTGATTTGGTTCTGAGACGTGCCAACCAGGGAGA AGGAGGATACATTGACAATGCTATCATTTGCCAGCTATGCGACGATGAGGCCGAAGAACC CATCAAGTCCAAGTGTCACCACACGTTCTGTCGAGTGTGTATCAAGGACTACTGTTCTGG AGCCTCTGACTGTCCCGTCTGTCATATCAACCTGACTATCGATTTGAATGCCCCCGCTAT TGAACAGGAGACCAACTCCAAGGAGAAAACATCGATTGTTCAGCGAATCAACATGACTGG TGGCTGGCGATCTTCCACAAAGATTGAGGCATTGGTCGAGGAGCTATACAAGCTGCGAAG CGACAGACAGACCATCAAAAGCATTGTTTTTAGCCAGTTCACATCTATGCTGGATTTGGT GGAGTGGCGGCTTCGACGAGCAGGGTTCCAAACCGTCAAGCTCCAGGGTAACATGTCCCC TACCCAGCGACAAAACTCCATCAAATACTTCATGGAGAACCCACAGGTGGAGGTTTTTCT GGTGTCTCTCAAGGCCGGAGGAGTGGCTCTGAACCTATGCGAGGCATCTCAGGTGTTCAT CCTGGACCCCTGGTGGAACCCTTCGGTGGAGTGGCAGTCTGGAGACCGAGTCCATCGTAT TGGACAGCATCGACCTGTTAAGATTACTCGGTTTGCGATCGAAGACTCCATCGAGTCGCG TATCATTGAGCTTCAAGAGAAGAAGGCCAGTATGATTCATGCGACTCTGGGACAAGATGA CGGAGCCATCAACCGGCTAACCCCTGCTGATATGCAGTTTCTTTTCACTAACTAGAAGTA TAGACATGATAGATGTTACGTATGCTCTATGGAAGTCTGTAGGTCATGTAGAAGTGACAG CGCCTGTCAACCGAAAGACAACTTCCTATGGAGCATTTGAGCCGTCAAAGATTCTGTATT ATCAACTGGATGTCAACCTTTCTATAAACCATGGAATAACCGTCAACAAACACCTCTGTG CAATCTTGCGATGCTCGATCTTGGAGAAGCACGCCAACACCGTGTGCATTCATGGAGTCT ACACATGCTGCGATATTTGGGGACGAAAAAGAACTTGTGGTGTCAGAAGAAGGAG
>YALI0F01232g.cds ATGACAGTATCCGGCGACCTTTCCAGCGAAGACGGCGGCGGATTTGTGGTCAGCGACGCC AGTCCAGCCCCCGAAGCGCCCAAGAAGGAAACAAAACTGCCGACGTTCAAGCGGAAGCCG AGGACCGCTGCAACTAACAAGGCCCAGCTCAAGGAGTTCGATGACGAGGGTAATGAGGTG GTTCAGGACCCATCCAAGACCAGATCTGCTTCAAGTCAGGAGCCGGCTGCCGCGCCTAAG AGACGTGGCCGTTCCAGAGCCGTTATTGATGACAATAGCGAGGCTTCTTCGTCGTCGTCG CTCGCTACACGAGCTAAAGTCGCCACCCGATCCCGAGCCACAAAGCCAAAGGCGACACGC AAGCGGGCAATAGTGGTGAGTGACGACTCTTCCGGTGATGAGTATAAGGCCAGCGATGAG TCTGATCGAGAACAGGCCGTGGAAGATGGAGGGTTTATGATTGCGGATGATCTGGAGGAG GGCGAAGAAGAGAAACCCAAAAAGAGAAGAGCTCCAGCTAAAAAGAAAGCCAAGAAGGAC GACTACGATGAGCTGGATGAAGACGGAAACAAAAAACCCCGGTATCTCAAATACTACGAC CGGACTACCAAGGCTTTGTTTGAACAGCATCCTGAGTTGGAGAACACCTTTATTGATCTC GACAATAAACCGAGGATCCAGGTTGAAAAGGCCGAACAGCCAAAGTCTATGGCTGTAACT CTGCTGCCGTTTCAACAAGAGGGTCTCAACTGGCTTTTGAAGCAGGAGGAGGGAGAATAC AAGGGCGGTATTCTTGCTGATGAAATGGGAATGGGTAAAACTATCCAGACGATTGCCTTG ATCATCGCCTCGGGAGTCAAGCCCAACCTCATTGTCGCCCCTACCGTTGCTCTGATGCAA TGGGCCAATGAAATTAACGACCATTCTGCGGGCTCTCTCAAAGTGGCTGTTTACCATGGA GCCAACAAAGATTCATTCTCTGTGAAAGATCTGGAGGGCTACGACTGTGTGATGACGACC TATGCGGTTCTAGAGAGCGTTTACCGACGTCAACAGAGCGGTTTTGTGCGCAAGGGAGTC GAGGGAAAGCAGTACAAAAAGTCTCCTTTGCATCAAGTTCAATGGGGAAGAGTTGTGCTA GATGAGGCTCATAATATCAAGGATCGGGCAAGTAACACCGCCAGAGCCGCCTTCAATCTC AATACCGAGAAACGGCTTTGTCTCTCTGGCACTCCTCTTCAGAACCGAATCGGTGAAATG TTTTCGCTGATTCGGTTCCTCGGAATCAAACCGTTCTGCGAGTATTTTTGCAAAAAATGC CCCTGCCGATCTCATGACTGGAGCTTTGTCAACAACCGAACATGTGTCACGTGCGGGCAT CGACCCATGGACCACACAAACTACTTCAACCACGTGCTCTTGAAACATATCCAGAAGGGA GGTATCAGCAAAGAAGGCAAGGAGAGCTTCGGCAACATCCAGAAACTGCTCAAGCACATT ATGCTGCGTCGAACCAAGGTCGAGAGAGCAGATGATCTCGGTCTACCCCCTAGAATCGTC ACTATTCGACGGGACTTTTTTAACGAGGAGGAGAAAGACCTCTACCAGAGTATCTACTCG GACGTGAACCGGAAATTCAACACCTATGTGGCACAGGGAGTGGTTCTCAACAACTATGCC AACATTTTCTCTCTGATTACTCGAATGAGACAGATTGCAGATCATCCTGATTTGGTTCTG AGACGTGCCAACCAGGGAGAAGGAGGATACATTGACAATGCTATCATTTGCCAGCTATGC GACGATGAGGCCGAAGAACCCATCAAGTCCAAGTGTCACCACACGTTCTGTCGAGTGTGT ATCAAGGACTACTGTTCTGGAGCCTCTGACTGTCCCGTCTGTCATATCAACCTGACTATC GATTTGAATGCCCCCGCTATTGAACAGGAGACCAACTCCAAGGAGAAAACATCGATTGTT CAGCGAATCAACATGACTGGTGGCTGGCGATCTTCCACAAAGATTGAGGCATTGGTCGAG GAGCTATACAAGCTGCGAAGCGACAGACAGACCATCAAAAGCATTGTTTTTAGCCAGTTC ACATCTATGCTGGATTTGGTGGAGTGGCGGCTTCGACGAGCAGGGTTCCAAACCGTCAAG CTCCAGGGTAACATGTCCCCTACCCAGCGACAAAACTCCATCAAATACTTCATGGAGAAC CCACAGGTGGAGGTTTTTCTGGTGTCTCTCAAGGCCGGAGGAGTGGCTCTGAACCTATGC GAGGCATCTCAGGTGTTCATCCTGGACCCCTGGTGGAACCCTTCGGTGGAGTGGCAGTCT GGAGACCGAGTCCATCGTATTGGACAGCATCGACCTGTTAAGATTACTCGGTTTGCGATC GAAGACTCCATCGAGTCGCGTATCATTGAGCTTCAAGAGAAGAAGGCCAGTATGATTCAT GCGACTCTGGGACAAGATGACGGAGCCATCAACCGGCTAACCCCTGCTGATATGCAGTTT CTTTTCACTAACTAG
>YALI0F01232g.aa MTVSGDLSSEDGGGFVVSDASPAPEAPKKETKLPTFKRKPRTAATNKAQLKEFDDEGNEV VQDPSKTRSASSQEPAAAPKRRGRSRAVIDDNSEASSSSSLATRAKVATRSRATKPKATR KRAIVVSDDSSGDEYKASDESDREQAVEDGGFMIADDLEEGEEEKPKKRRAPAKKKAKKD DYDELDEDGNKKPRYLKYYDRTTKALFEQHPELENTFIDLDNKPRIQVEKAEQPKSMAVT LLPFQQEGLNWLLKQEEGEYKGGILADEMGMGKTIQTIALIIASGVKPNLIVAPTVALMQ WANEINDHSAGSLKVAVYHGANKDSFSVKDLEGYDCVMTTYAVLESVYRRQQSGFVRKGV EGKQYKKSPLHQVQWGRVVLDEAHNIKDRASNTARAAFNLNTEKRLCLSGTPLQNRIGEM FSLIRFLGIKPFCEYFCKKCPCRSHDWSFVNNRTCVTCGHRPMDHTNYFNHVLLKHIQKG GISKEGKESFGNIQKLLKHIMLRRTKVERADDLGLPPRIVTIRRDFFNEEEKDLYQSIYS DVNRKFNTYVAQGVVLNNYANIFSLITRMRQIADHPDLVLRRANQGEGGYIDNAIICQLC DDEAEEPIKSKCHHTFCRVCIKDYCSGASDCPVCHINLTIDLNAPAIEQETNSKEKTSIV QRINMTGGWRSSTKIEALVEELYKLRSDRQTIKSIVFSQFTSMLDLVEWRLRRAGFQTVK LQGNMSPTQRQNSIKYFMENPQVEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQS GDRVHRIGQHRPVKITRFAIEDSIESRIIELQEKKASMIHATLGQDDGAINRLTPADMQF LFTN*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0F01232g