HomeYALI0E33275g
similar to uniprot|P53178 Saccharomyces cerevisiae YGL047w ALG13 Catalytic component of UDP-GlcNAc transferase, required for the second step of dolichyl-linked oligosaccharide synthesis
Element type: CDS
Element length: 591 nucleotides,
on sense strand of
Yali0E: 3945352..3945942.
Other names:
YALI-CDS5524.1
YALI-IPF4297
Coding sequence: 197 codons.
Element length: 591 nucleotides,
on sense strand of
Yali0E: 3945352..3945942.
Other names:
YALI-CDS5524.1
YALI-IPF4297
Coding sequence: 197 codons.
Database cross references:
EMBL: CR382131
GeneID: 2911943
HOGENOM: Q6C3P1
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382131
GeneID: 2911943
HOGENOM: Q6C3P1
Homologs and Orthologs
Homologs in protein families: GL3R1263 GL3R1263.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0E33275p 
similar to uniprot|P53178 Saccharomyces cerevisiae YGL047w Hypothetical 22.7 kDa protein in SUG1-RNA15 intergenic region
Protein domain map
Database cross references:
InterPro: IPR007235
KEGG: yli:YALI0E33275g
Pfam: PF04101
RefSeq: XP_504721.1
UniProtKB/Swiss-Prot: Q6C3P1
UniprotKB: ALG13_YARLI
InterPro: IPR007235
KEGG: yli:YALI0E33275g
Pfam: PF04101
RefSeq: XP_504721.1
UniProtKB/Swiss-Prot: Q6C3P1
UniprotKB: ALG13_YARLI
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>YALI0E33275g.nt CTGACAAATTCCCCGCTCTCGAAGATATTGACGATCTCCCTCAGGATGTCGAAGTCGATG TCGACATCAAGGACACCCACGCCGACGAGGATGACTTCAAGAAGTCGTTCCCTTCCCTGG AGGACGAGGAGAACGATCTCACCGAGAACGCATTCAAGGAGGACTTCCCCGCCCTCGAGG AGGAGACACAGGCTACCACCGGCAACGTTGTTACTGCTGAGGCTACCGAGGATTCCTCTC CCGTCGATGGCCTTGAGACCTCCGTCAAGAGCCTGAACCTGTCCGAGTCCACCGCTATCA AGGAGTGGAAGGAGCGACAGCAGCTGGAGATTGAGCGACGAGACCAGCAGGCCGAGGCTA AGCGAAAGGAGACCATTGAGAAGGCCCAGAAGGCCATTGACGACTTTTACGAGAACTACA ACTCCAAGCGTGATGAGGGCGTCAAGTCCACTCAGGAGGCCGCCAAGGAGTTCCTTGCAA GCATAGATGATACTTCCTCTTCCTCTGGCACCACCTGGGACCGAGCTCTGAAGCTGATTG ATGACTCTGACACCGGAACCAAGGAGGGTTCTCGAGACAAGACTCGATTCCGAGAGATTC TTCTGTCTCTCAAGGGTGACGTCGACGCCCCTGGTGCCGCTGGTTACTAAATGTATGATA AGATAATGATTTAATGAAGTAACAATTAGTAATTTGTGTTGGTTGAAGTGTCACATTATG TGCTTTTGAGGTGCTGTACTAGTACACTACTTGTAGCTACTGCCACACACAAGTTCTGGC ATCTTAATAGCCGTGTCAACTTGTCCATGTATACTGACACGTAAATCGAACGAACTCTAC ACTCAAATTCAGCACAAAAGCAGATGCAGCCAGAGTACGCGTTTTTCGGCTTTAAAAGAT GTAGAATCAGCCCAGTAGCAGACATGATTTCTGTCACAGTCGTTTGGAATATCCCACCTA ACAGTGTGCCAATCCTAGTCGTCCTGGACCTCAATCGGTCATGCATGAAAGCAGTGCATT GAGTAAGTTGTACAACTGGGACTGTAGTGTCGTATTCATCATCCTCAACATCTACACCAC CATGCTGGTCTTGGTAACAACAGGTGGAACGGTGCCGTTTGAGGCTCTCATCGAGCTGGT ACTCTCACATGAATCCATTACTACGCTTTCCCAGCTGGGATTCTCCAAAATGCGCGTTCA ATACGGACGGGGCAATCGCCATATCTTCACAAAACATCACAAGGAAGGCGTCATGTCGAT AACGGGGTTTGAGTACACCGATGATCTCGCAGGTGAAATGTCGAGGGCACATTTGGTTAT TTCGCATGCAGGAACTGGATCTGTTTTGGATGCACTCAGAATAGGCAAACATCCAGTGGT TGTGGTGAACAGTAAATTGATGGACAACCACCAGATTGAGATTGCCGAGGAACTGTTCCG GAAACGGCATTTGCTCGTTTCAGGAGACACGGACTCTGTTGGGTTCATCAAAGCCCTTAA AATGCATCGGGAGTATCTATTTGAGACTCTTCCCGATCCCGAAGAGGGTATTCTACAGCG CATTATTGAGGAGACTGTGTCTTTTATGTAAGGTATTGGGCGTGAGGTTGCGAAGAAAGG TAGCTACTTTCCATCGTAAACGGACTATGATCTACGCTTCTACATCAACTAAGTTATTTC ATGTTGTATTTCATTAAGTAGCAATTATTTACTTTATATAAGACGGCGTTGCCATGTCGT GCTGGCTGTGTTTGGTGGGAAAGTTAGTGGATTTGTGCTGTCTAGTACATACTGTACATA CTCTGACCTTGGTGTTTATCGTCCAGTCATTCGCTTACCAATCTCACTGACCCAGGTAGG AGCTCGCTCAAAGCCGTTGTTACCGCTCTGG
Coding sequence
>YALI0E33275g.cds ATGCATGAAAGCAGTGCATTGAGTAAGTTGTACAACTGGGACTGTAGTGTCGTATTCATC ATCCTCAACATCTACACCACCATGCTGGTCTTGGTAACAACAGGTGGAACGGTGCCGTTT GAGGCTCTCATCGAGCTGGTACTCTCACATGAATCCATTACTACGCTTTCCCAGCTGGGA TTCTCCAAAATGCGCGTTCAATACGGACGGGGCAATCGCCATATCTTCACAAAACATCAC AAGGAAGGCGTCATGTCGATAACGGGGTTTGAGTACACCGATGATCTCGCAGGTGAAATG TCGAGGGCACATTTGGTTATTTCGCATGCAGGAACTGGATCTGTTTTGGATGCACTCAGA ATAGGCAAACATCCAGTGGTTGTGGTGAACAGTAAATTGATGGACAACCACCAGATTGAG ATTGCCGAGGAACTGTTCCGGAAACGGCATTTGCTCGTTTCAGGAGACACGGACTCTGTT GGGTTCATCAAAGCCCTTAAAATGCATCGGGAGTATCTATTTGAGACTCTTCCCGATCCC GAAGAGGGTATTCTACAGCGCATTATTGAGGAGACTGTGTCTTTTATGTAA
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0E33275p