YALI0E27654g

uniprot|O74937 Yarrowia lipolytica YALI0E27654g POX4 Acyl-CoA oxidase 4 (EC 1.3.3.6), peroxisomal

Genomic environment map

Element type: CDS
Element length: 2106 nucleotides,
on anti-sense strand of
Yali0E: complement(3264045..3266150).
Other names:
YALI-CDS1153.1
YALI-IPF3647
Coding sequence: 702 codons.

Database cross references:
EMBL: AJ001302
EMBL: CR382131
GeneID: 2911586
HOGENOM: O74937

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0456
Consensus family of 16 members, scrltkgdy (1 1 1 1 1 1 1 3 6)
16-member family, phyletic pattern sczltkgdy, profile (1 1 1 1 1 1 1 3 6)
Proteins: SACE0G01364p CAGL0A03740p ZYRO0E08338p SAKL0F02068p KLTH0G01914p KLLA0F09933p ERGO0E16500p DEHA2C01078p DEHA2D17204p DEHA2D17248p YALI0C23859p YALI0D24750p YALI0E06567p YALI0E27654p YALI0E32835p YALI0F10857p
Search in: Génolevures Google

Génolevures family GL3C0456.N1
Nine-SONS subgroup of a Consensus family
12-member family, phyletic pattern sczltkgdy, profile (1 1 1 1 1 1 1 2 3)
Proteins: SACE0G01364p CAGL0A03740p ZYRO0E08338p SAKL0F02068p KLTH0G01914p KLLA0F09933p ERGO0E16500p DEHA2D17204p DEHA2D17248p YALI0D24750p YALI0E27654p YALI0E32835p
Search in: Génolevures Google

Homologs in protein families: GL3C0456 GL3C0456.N1
Orthologs: strict determination not possible; homologs must be refined manually

Protein YALI0E27654p

uniprot|O74937 Yarrowia lipolytica POX4 Acyl-CoA oxidase 4 (EC 1.3.3.6), peroxisomal

Protein domain map

Protein length: 701 amino acids
Protein family: GL3C0456

Database cross references:
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
HSSP: P07872
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0E27654g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_504475.1
UniProtKB/TrEMBL: O74937
UniprotKB: O74937_YARLI

Computed results for YALI0E27654p

Blastp Genolevures

Blastp Uniprot

Gene Ontology terms

GO:0055114	oxidation reduction
GO:0050660	FAD binding
GO:0009055	electron carrier activity
GO:0006635	fatty acid beta-oxidation
GO:0005777	peroxisome
GO:0003997	acyl-CoA oxidase activity
GO:0003995	acyl-CoA dehydrogenase activity

Sequence data

Nucleotide sequence

>YALI0E27654g.nt
GTAAGGTAGCACACATCGTACGTACTTGTACGAGTACATGCCTGGCACAGTCTCATTCTA
TCCTAACACAATGTACAATGTACAACATTTTTCGGCTCGGCCATGCAGCTTCGGAGACAC
GCTCGTGAAAAAGGGTCGGACTAATCAACCTCACCGTTGCGTTAGGCTGCCAGGTGAAAC
AATATTATTTTGACAGCTAGAAAGTCCGGAGATGACACTGGGGTAACGGAACTACTGTAC
TTCGCACAAGTCGGCGTGAGTTTGTGGTAGTTTATATGAGTAGTTAGCTATAGTCATGCC
CCATTATTTGATAATCGGATCACACACGCTGAATAATTACACTGGTCTTATTTGTGCTAT
CATTCCTACTACCTCCTTCTGTATAATAATACACCTTCGCTCTTTTGCCGATACATATGC
ACCATTAAATGATTAGAATGCGGGGATTGAGTTTCGGATTTTTCTTACATGCGTTGCGCG
TTGGAGGTGATCCGAGCAGGTGGAATAGGTGTATATTGAGCGATTGGGAGAGTTGGTTGT
GTACAATTATTTTAATACCTCTTCTGATTGTTTTCTATTGCCTTCCATTTCTATCTTTAC
CTGCCATCTCACGTCGTGTGTACCATCCCCACATACGGAACCAGTAGGTCTTTTAGGCTC
TGAACGTGCAAATGAGTTTGGTGGGGTAGGCAGAGATCGCATAGAGACGGGTAGAATGAG
CAGTTAAAAGCTGTGTTGAGTGGTAAAAATTTACAATAAGTGTTCCTCAAGGCATCAAGG
AGACGAAATAAGCCATTATGGACACGAACCAACAGTCCCACCACGTTCTAAACACATTCC
TCCACTGCCACTCCCAAACACCACGTCCCACATAAACTTCTACCCCACATTTTGACAAGC
CTATTCGTTTAATAATCACCCCGAGGAGACAGAAAGCCTAACAGCTGGAGCCACTATATA
GTTGCAGTGGCATGCTCTTTCATTGAAACGACCCACAACAATGATCACCCCAAACCCCGC
TAACGACATTGTCCATGACGGCAAGCTCTACGACACCTTCACTGAGCCCCCCAAGCTGAT
GGCTCAGGAGCGAGCTCAGCTGGACTTCGACCCTAGAGACATCACCTACTTTCTGGATGG
CTCTAAGGAGGAGACCGAGCTGCTGGAGTCGCTCATGCTCATGTACGAGCGAGACCCTCT
CTTCAACAACCAGAACGAGTACGATGAATCGTTTGAAACACTGCGAGAGCGATCTGTGAA
GCGAATTTTCCAGCTGTCCAAGTCCATCGCCATGGACCCCGAGCCCATGTCTTTCCGAAA
GATTGGGTTCCTGGGTATTCTTGACATGGGAACGTATGCTCGACTGGGAGTCCACTACGC
GCTCTTCTGTAACTCCATCCGGGGCCAGGGAACCCCCGATCAGCTCATGTACTGGCTGGA
CCAGGGAGCCATGGTCATCAAGGGCTTCTACGGCTGTTTTGCCATGACCGAAATGGGCCA
TGGATCTAACCTGTCGCGTCTGGAAACCATCGCCACTTTCGACAAAGAGACCGACGAATT
TATCATTAACACGCCCCACGTTGGAGCCACAAAGTGGTGGATTGGAGGAGCCGCCCACAC
TGCTACTCACACACTTGCCTTTGCCCGTCTTCAAGTAGACGGAAAGGACTACGGTGTGAA
ATCGTTTGTCGTACCTCTCCGAAACCTGGACGACCATTCGCTGCGTCCTGGAATCGCCAC
AGGTGATATTGGTAAGAAGATGGGTCGAGATGCCGTTGACAACGGCTGGATTCAGTTCAC
CAACGTCCGAGTGCCCCGAAACTACATGCTCATGAAGCATACCAAGGTTCTTCGAGACGG
TACCGTCAAGCAGCCGCCTTTGGCCCAACTGACTTACGGATCTCTCATCACTGGACGAGT
CCAGATGACCACTGACTCTCACAATGTGTCCAAAAAGTTCCTCACCATTGCCCTGAGATA
CGCCACCATCCGACGACAGTTCTCGTCAACTCCAGGAGAGCCCGAAACCCGACTAATTGA
CTACCTGTACCACCAAAGACGACTCCTGCCTCTTATGGCTTACTCTTACGCCATGAAACT
AGCTGGAGATCACGTCCGAGAGCTGTTCTTTGCATCCCAGGAGAAGGCTGAGAGCCTCAA
GGAGGACGACAAAGCCGGAGTTGAGTCTTACGTCCAGGATATCAAGGAGCTCTTCTCTGT
TTCTGCTGGTCTCAAGGCTGCCACTACATGGGCTTGTGCTGACATCATTGACAAGGCCCG
ACAGGCGTGTGGAGGCCACGGATACTCTGCCTACAACGGCTTTGGACAGGCCTTCCAGGA
CTGGGTTGTCCAGTGCACTTGGGAGGGTGACAATACTGTTCTGACTCTATCTGCCGGCCG
AGCTCTGATCCAATCTGCTCTCGTCTACCGAAAGGAGGGCAAACTAGGTAACGCCACGAA
GTACCTCTCTCGGTCCAAGGAGCTTGCCAACGCCAAGAGAAACGGACGATCCCTGGAAGA
CCCCAAGCTGCTCGTGGAGGCATGGGAGGCTGTCTCTGCCGGTGCTATCAACGCTGCTAC
TGACGCTTACGAGGAGCTCTCCAAGCAGGGAGTTTCTGTTGACGAGTGCTTTGAGCAGGT
GTCCCAGGAGCGATTCCAGGCTGCCCGAATCCACACTCGACGAGCTCTTATCGAGGCCTT
CTACTCACGAATCGCCACTGCTGATGAGAAGGTGAAGCCTCATCTGATCCCTCTGGCCAA
CCTGTTTGCCCTGTGGTCCATTGAGGAGGACTCTGCTCTGTTCCTGGCTGAGGGCTACTT
TGAGCCTGAGGATATCATTGAGGTGACTTCTCTTGTCAACAAGTACTGCGGAATTGTTCG
AAAGAACGTTATTGGATACACCGATGCCTTCAACCTGTCCGACTACTTCATCAACGCTGC
CATTGGACGATACGACGGAGACGTGTACAAGAACTACTTTGAGAAGGTCAAACAGCAGTA
CCCTCCTGAGGGTGGCAAGCCTCACTACTACGAGGATGTCATGAAGCCCTTCCTGCATCG
AGAGCGAATTCCCGATGTCCCCATGGAGCCCGAGGATATTCAGTAATGATTTTGTAGGTT
TTAGTAAGTATTAACGTTTTTTATGATTTGGAGTTGTGTGTAACTTGTACAGGTACACCT
ACATACTGTACTGTAGGTCCAAAGATAGGTACACTGTGGCAATAATTATGCGAGTACTTG
TACCGTCATCGTAGCTGCTGTAAAGAGATCAGACACAGGCACTTTTCCCCACCATGAGAT
CACCACTCGTCGTCCGAGTACTTCTATGGCACAGCCACAATCACATGTACTTGTGCATGC
CAATGTGTGACATCATCATCTAGAGCTATCATCATATTCCCGCTGC

Coding sequence

>YALI0E27654g.cds
ATGATCACCCCAAACCCCGCTAACGACATTGTCCATGACGGCAAGCTCTACGACACCTTC
ACTGAGCCCCCCAAGCTGATGGCTCAGGAGCGAGCTCAGCTGGACTTCGACCCTAGAGAC
ATCACCTACTTTCTGGATGGCTCTAAGGAGGAGACCGAGCTGCTGGAGTCGCTCATGCTC
ATGTACGAGCGAGACCCTCTCTTCAACAACCAGAACGAGTACGATGAATCGTTTGAAACA
CTGCGAGAGCGATCTGTGAAGCGAATTTTCCAGCTGTCCAAGTCCATCGCCATGGACCCC
GAGCCCATGTCTTTCCGAAAGATTGGGTTCCTGGGTATTCTTGACATGGGAACGTATGCT
CGACTGGGAGTCCACTACGCGCTCTTCTGTAACTCCATCCGGGGCCAGGGAACCCCCGAT
CAGCTCATGTACTGGCTGGACCAGGGAGCCATGGTCATCAAGGGCTTCTACGGCTGTTTT
GCCATGACCGAAATGGGCCATGGATCTAACCTGTCGCGTCTGGAAACCATCGCCACTTTC
GACAAAGAGACCGACGAATTTATCATTAACACGCCCCACGTTGGAGCCACAAAGTGGTGG
ATTGGAGGAGCCGCCCACACTGCTACTCACACACTTGCCTTTGCCCGTCTTCAAGTAGAC
GGAAAGGACTACGGTGTGAAATCGTTTGTCGTACCTCTCCGAAACCTGGACGACCATTCG
CTGCGTCCTGGAATCGCCACAGGTGATATTGGTAAGAAGATGGGTCGAGATGCCGTTGAC
AACGGCTGGATTCAGTTCACCAACGTCCGAGTGCCCCGAAACTACATGCTCATGAAGCAT
ACCAAGGTTCTTCGAGACGGTACCGTCAAGCAGCCGCCTTTGGCCCAACTGACTTACGGA
TCTCTCATCACTGGACGAGTCCAGATGACCACTGACTCTCACAATGTGTCCAAAAAGTTC
CTCACCATTGCCCTGAGATACGCCACCATCCGACGACAGTTCTCGTCAACTCCAGGAGAG
CCCGAAACCCGACTAATTGACTACCTGTACCACCAAAGACGACTCCTGCCTCTTATGGCT
TACTCTTACGCCATGAAACTAGCTGGAGATCACGTCCGAGAGCTGTTCTTTGCATCCCAG
GAGAAGGCTGAGAGCCTCAAGGAGGACGACAAAGCCGGAGTTGAGTCTTACGTCCAGGAT
ATCAAGGAGCTCTTCTCTGTTTCTGCTGGTCTCAAGGCTGCCACTACATGGGCTTGTGCT
GACATCATTGACAAGGCCCGACAGGCGTGTGGAGGCCACGGATACTCTGCCTACAACGGC
TTTGGACAGGCCTTCCAGGACTGGGTTGTCCAGTGCACTTGGGAGGGTGACAATACTGTT
CTGACTCTATCTGCCGGCCGAGCTCTGATCCAATCTGCTCTCGTCTACCGAAAGGAGGGC
AAACTAGGTAACGCCACGAAGTACCTCTCTCGGTCCAAGGAGCTTGCCAACGCCAAGAGA
AACGGACGATCCCTGGAAGACCCCAAGCTGCTCGTGGAGGCATGGGAGGCTGTCTCTGCC
GGTGCTATCAACGCTGCTACTGACGCTTACGAGGAGCTCTCCAAGCAGGGAGTTTCTGTT
GACGAGTGCTTTGAGCAGGTGTCCCAGGAGCGATTCCAGGCTGCCCGAATCCACACTCGA
CGAGCTCTTATCGAGGCCTTCTACTCACGAATCGCCACTGCTGATGAGAAGGTGAAGCCT
CATCTGATCCCTCTGGCCAACCTGTTTGCCCTGTGGTCCATTGAGGAGGACTCTGCTCTG
TTCCTGGCTGAGGGCTACTTTGAGCCTGAGGATATCATTGAGGTGACTTCTCTTGTCAAC
AAGTACTGCGGAATTGTTCGAAAGAACGTTATTGGATACACCGATGCCTTCAACCTGTCC
GACTACTTCATCAACGCTGCCATTGGACGATACGACGGAGACGTGTACAAGAACTACTTT
GAGAAGGTCAAACAGCAGTACCCTCCTGAGGGTGGCAAGCCTCACTACTACGAGGATGTC
ATGAAGCCCTTCCTGCATCGAGAGCGAATTCCCGATGTCCCCATGGAGCCCGAGGATATT
CAGTAA

Predicted translation product

>YALI0E27654g.aa
MITPNPANDIVHDGKLYDTFTEPPKLMAQERAQLDFDPRDITYFLDGSKEETELLESLML
MYERDPLFNNQNEYDESFETLRERSVKRIFQLSKSIAMDPEPMSFRKIGFLGILDMGTYA
RLGVHYALFCNSIRGQGTPDQLMYWLDQGAMVIKGFYGCFAMTEMGHGSNLSRLETIATF
DKETDEFIINTPHVGATKWWIGGAAHTATHTLAFARLQVDGKDYGVKSFVVPLRNLDDHS
LRPGIATGDIGKKMGRDAVDNGWIQFTNVRVPRNYMLMKHTKVLRDGTVKQPPLAQLTYG
SLITGRVQMTTDSHNVSKKFLTIALRYATIRRQFSSTPGEPETRLIDYLYHQRRLLPLMA
YSYAMKLAGDHVRELFFASQEKAESLKEDDKAGVESYVQDIKELFSVSAGLKAATTWACA
DIIDKARQACGGHGYSAYNGFGQAFQDWVVQCTWEGDNTVLTLSAGRALIQSALVYRKEG
KLGNATKYLSRSKELANAKRNGRSLEDPKLLVEAWEAVSAGAINAATDAYEELSKQGVSV
DECFEQVSQERFQAARIHTRRALIEAFYSRIATADEKVKPHLIPLANLFALWSIEEDSAL
FLAEGYFEPEDIIEVTSLVNKYCGIVRKNVIGYTDAFNLSDYFINAAIGRYDGDVYKNYF
EKVKQQYPPEGGKPHYYEDVMKPFLHRERIPDVPMEPEDIQ*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

YALI0E27654g

YALI0E27654g

Genomic environment map

Computed results

Homologs and Orthologs

Protein YALI0E27654p

Protein domain map

Computed results for YALI0E27654p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes