HomeYALI0E24431g
weakly similar to uniprot|P38086 Saccharomyces cerevisiae YBR073w RDH54 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA
Element type: CDS
Element length: 2823 nucleotides,
on sense strand of
Yali0E: 2910375..2913197.
Other names:
YALI-CDS0539.1
YALI-IPF4436
Coding sequence: 941 codons.
Element length: 2823 nucleotides,
on sense strand of
Yali0E: 2910375..2913197.
Other names:
YALI-CDS0539.1
YALI-IPF4436
Coding sequence: 941 codons.
Database cross references:
EMBL: CR382131
GeneID: 2912548
HOGENOM: Q6C4R0
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382131
GeneID: 2912548
HOGENOM: Q6C4R0
Homologs and Orthologs
Homologs in protein family: GL3M4588Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0E24431p 
weakly similar to uniprot|P38086 Saccharomyces cerevisiae YBR073w RDH54 required for mitotic diploid- specific recombination and repair and meiosis
Protein domain map
Database cross references:
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
KEGG: yli:YALI0E24431g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_504352.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6C4R0
UniprotKB: Q6C4R0_YARLI
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
KEGG: yli:YALI0E24431g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_504352.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6C4R0
UniprotKB: Q6C4R0_YARLI
Sequence data
>YALI0E24431g.nt TAGTTTTGTAGAATGAACGGTTTCAATGAGGGATTTGATCGGCGTTTGACCCATATCCAA GCTTATCAAAGGTCCGATCAGCAGAAGCTCGTGAAATAACAGTCACTCTTCGCAGTAATC CAGTCGCTTACTTGGAGTGACCTACTCGGCTAGCCTCCTACTAGTAGGTGTAGGCTGCCT TCAATTCCTCTAGCCACACCCTCTGAGAGTCAAGCCCATTCCCATGTATTTACTCACCCT GGATCCGACAGGCATAGGCGTGGCAAGGCTGCGAGTTGTAGTCGATTTCTTCTTCAGCCA TTGTGTTTATCGTATGTGTTGTGCTGTGTTGCTGTGTGGAGATAGTAGAGTGGGTTATGC ATGTTGAGCTTGATTTCCCTTCTTGTAAGAGATGAAGTGGAAAGCAGTAATTGTGCTTCA CTGTTCATAAATCTGGAAAAAGGTAATGTAATTCAAATAATCTAGTCTTACACTACAGAT TAAGAGAAAAATCACCTCAATCAGACAACTTTTGCCGTAATTAGAATGACGCGCAAAGTT CCACCATCGTCCTTCATCGAACATTAAGTTGAAGCAGTACAAGTAGGAAAGACTATCTAC AATCCACAGTACCTACTAGACACTGGACATGGTACTTGTATCACAGAAATACAATCTACA TATATCATTCTGCTCCCCTTTATTTCTTGATACAAATACCGACTTTTAATATATCCGTGG TACCAATTACTGGTACCAATCACACCCCTTGACGCATCTTGTTGACCTATTTCTCTCTCC TACTTTTGTTAGACAGCTCTCATTGCAGAAAAGATGGTATCGTGACACTCCCCTACTAGC TCAATCAAACTATGGTATAGATCCGACCTTCTGTCACATATTATCTCCTCCTTTTGCCTC CATCTATCTTCTCTCCTCTCCTACATCCTCCAAAGCACGTCAACTCTAATTAGAACACGA CTTTTCTCATTTCACGACGCGTCTACGCCTGTTCAAAAACATGTATCGACGCCCTGCGAA GCGCCGGGTGCCCAATCCCGATGTTCTTTTGGCGCCTTTCAAGCCGCTGACGCAAAATCT GCCTCCAAAAACCGACCCCAAACCCTCAATATCAGAATCGTCCGACTCGGAGTGTGCCAG TGACGATGATGAACAGGAAAAGCTGCGGGTCAAACGACGAAAGCTGAAGGAGCAACAGGA GGAGGAAGAGCGCCAGAAACAGGAAGCTGAAAAGAAACGACAGGCCGAACTCCGGGAGCA AAACCGACGCATTTCAAAGGAAGAAGCGGCCCAGATGCTCAAGGCCGTGGCAGAACCAAA ACGTGCCAGACAAGCGGATCTGGGTGTGCTGAGGTCTGCCGAGGAGATTGAACAGGAGCT CCAGATCCGGGAGCGCAAGGAACGCGTGGAGTCCGAGAGAATCAGCGCCAGAAACCTCTC GTTCAATGCTCTGTATCGAAAGAAGCTGGGGCACAAAAAGAAGCATAAGACATGGGATGG AGATGGAATCGTGGTCGTTAAGGGAGAAACACTGTCGCTCTACACCCCTGAAGGTAAGGG GATCGTTCGGGGTTTCAAATTGCAGCCCCAGGTAGTCGTTGAAGAGGGTCAGGTGCTGAA GGTGGGTCCTCTAGAGATCGAACTTGAAAGTACCGTGGTGGAGGCCCAAAGAGGAGTGCT AGGCATGGTGGAGGATATTGAGTCACGTACAGCAGTTGAGAAAGGTCGTTCTGCTTCCGC ATTACGTGAGTCTCCTGTTCCAACAAATGATACTCCAGAGCCATTGTCAGTTGAAGCAAC TTCAGCGGTTGTGACGGAAACATACACGCTTCCTGCTCCCACGACTTTCAAGGCAGTGAA ACGTCTACGTGTTAAACTACCACAGAAGATCACAGAGGAAAACTTTGCGACATTCATTCA GGATGTCAAAATTGACCCTCTGTTGAACACTGCCCTTCGGCCTCATCAGCGCGAAGCAGT CGACTTTTTGTACCGTTGTGTGATGGGTTTCAACCCCACATCAGGCTATGGAGCTCTCTT GGCCGACGAAATGGGTATGGGTAAAACACTGATGTCGATTGCTTTAATTTGGACGCTATT GAAGCAGACTCCGCTCAAAGGGGAACCTCCTCTAGCTAAACGAGTGCTGATTGTCTGTCC TGTGACTCTAGTGAACAACTGGAAGACTGAAATCAAGAAATGGTTGGGCCCTTCACGACT AGGTGTTATGGCCATTACTGACAGTATGAGCATTGATCTGGGAACGGTGATTCGAGATTT CACCTATGGACGGGTAAACCAGGTGATGATTATCGGCTACGAACGTCTCCTGCGAATTTC TGATCAGTTGCAGTCTGCCAACTTTGATCTGGTCATCTGTGACGAAGGTCATCGAATGAA AACTGCCGGAAACAAAGCCGCTAATGCCATCCAGAGTCTGGGGGTCGCCCGAAAGATCAT TCTCAGTGGTACTCCGATCCAGAACGATCTCAAGGAGTTCTTTGTCATGGTTGATTTCCT CAATCCCGGTCTACTGGGCTCTTTCCAGCAGTTCAACAAAGACTACATAATTCCCATTGT GCGGTCTCGTGCACCCGATGCATTCCCCAGTGAGCTCGAAAAGGGTCAAAAACAGTCTGC TCGATTGTCGTCAATCACTGGCCAGTTCATTTTACGTCGAACTGCTGACATTTTGTCTCG CTTCTTGCCCCCCAAGACTGAGACTGTTCTCTTCTGTCTCCCCAACGCCCAGCAAACGGA AATATACACCAAGCTGTCTTCCGAGTATCTGAATCGACTCGAACGCCACCAAGTTGACTC GTTCAAGTCGATACTGTCACTCAGAAAAGTGTGTAACTCGCCCATTCTTTTGTCTGAGGA TGGACCAGCCCTAGACTCGGGAAAGGCATATTTGCGTAACTCTGGTAAGATGAACACGCT GTTTCGCATGATTGGTCAACTGCGAGCACGTAACAAGATGGATCCTGACAACGCAGAGAA GGTTGTCATTGTATCGTCCTTTACGCAAACTCTGGATGTTATTGAGGGGCTGGTAAAGGA CCTTAAGCTGTCATTCACTCGTCTGGATGGATCCGTACAAGCTTCTGCACGTGCCAAGAT TGTCAAACAATTCAATTCTTCTTCCGCAGATAGCTGTTTTGTGTTTCTCTTGTCGGCGCG AGCTGGAGGAGTGGGTATCAATCTGATTGGTGCGTCTCGATTGTTCCTGTTTGACCCGGA TTGGAATCCTGCTGTCGACTTACAAGCCATGGCTCGTATCCATCGAGATGGCCAGAAGAA GCCCGTGTATATCTACCGTCTCCTTACTACTGGATGCATTGACGAGAAGATTTTCCAGCG ACAAACTATCAAGACCGGTCTGGCCAACTCCCTGATTGAAGGCACAGAAGAGGCTGATAC GTTCACGGATGAGGAGCTCAAGAAACTCTTCTCTATGGACGTGCTGACCCATTGTAATAC GCATGACTTAATGGAGTGCAAGTGTGAACACAATGGAGGTGATCTGGGAGAGGTGGTTGA GGAAGTGCAAGTGACCAAGGCCACAGCTTCAGATTCGTTCACTACGGCTCGTGAACTGGA GAAGAACCAAGACAAACAACAGAGGAGTCTCAAGAGTTTGCTGGAATACAAGCATATCAG TCCAGATGTTGTTCGTGAGCAATGGGACAGTCTGTCTGAGATTGGAGATGTGTTGCTGGA GAAGATTGTGGGAGAGAAGAATGATTTGGTTAGTTATATTCTGACCAAGACTTCAGTTCA AGCGTTAGACGAGGTTGATACGGTGGACGTTGTGGAGGAATGATAGAGAAAATGGTACGG GATTGCATAGCATAGCGATAGATGGAATGCATTGGAACTTACTTAATGGCACGACACTAC TTGTAATTTGTATTTCATTTCAGGCAAATTTCACATAAACGGGTGTTGGTTCTTGCTGCT GGTTCACATTTCCTGGATGCCGAGTGTTGGTGACGATGGGAGCCAAGCGCCTTCTAGTAG GGCTACTCGTACTTACCGAAGTAGTCTCTACAAAACACTATGGTAAGATGGTGTTGTACA GAGCAGTTGTAACGGGTGAAGATTGGTTTACGGCTATCTGTGG
>YALI0E24431g.cds ATGTATCGACGCCCTGCGAAGCGCCGGGTGCCCAATCCCGATGTTCTTTTGGCGCCTTTC AAGCCGCTGACGCAAAATCTGCCTCCAAAAACCGACCCCAAACCCTCAATATCAGAATCG TCCGACTCGGAGTGTGCCAGTGACGATGATGAACAGGAAAAGCTGCGGGTCAAACGACGA AAGCTGAAGGAGCAACAGGAGGAGGAAGAGCGCCAGAAACAGGAAGCTGAAAAGAAACGA CAGGCCGAACTCCGGGAGCAAAACCGACGCATTTCAAAGGAAGAAGCGGCCCAGATGCTC AAGGCCGTGGCAGAACCAAAACGTGCCAGACAAGCGGATCTGGGTGTGCTGAGGTCTGCC GAGGAGATTGAACAGGAGCTCCAGATCCGGGAGCGCAAGGAACGCGTGGAGTCCGAGAGA ATCAGCGCCAGAAACCTCTCGTTCAATGCTCTGTATCGAAAGAAGCTGGGGCACAAAAAG AAGCATAAGACATGGGATGGAGATGGAATCGTGGTCGTTAAGGGAGAAACACTGTCGCTC TACACCCCTGAAGGTAAGGGGATCGTTCGGGGTTTCAAATTGCAGCCCCAGGTAGTCGTT GAAGAGGGTCAGGTGCTGAAGGTGGGTCCTCTAGAGATCGAACTTGAAAGTACCGTGGTG GAGGCCCAAAGAGGAGTGCTAGGCATGGTGGAGGATATTGAGTCACGTACAGCAGTTGAG AAAGGTCGTTCTGCTTCCGCATTACGTGAGTCTCCTGTTCCAACAAATGATACTCCAGAG CCATTGTCAGTTGAAGCAACTTCAGCGGTTGTGACGGAAACATACACGCTTCCTGCTCCC ACGACTTTCAAGGCAGTGAAACGTCTACGTGTTAAACTACCACAGAAGATCACAGAGGAA AACTTTGCGACATTCATTCAGGATGTCAAAATTGACCCTCTGTTGAACACTGCCCTTCGG CCTCATCAGCGCGAAGCAGTCGACTTTTTGTACCGTTGTGTGATGGGTTTCAACCCCACA TCAGGCTATGGAGCTCTCTTGGCCGACGAAATGGGTATGGGTAAAACACTGATGTCGATT GCTTTAATTTGGACGCTATTGAAGCAGACTCCGCTCAAAGGGGAACCTCCTCTAGCTAAA CGAGTGCTGATTGTCTGTCCTGTGACTCTAGTGAACAACTGGAAGACTGAAATCAAGAAA TGGTTGGGCCCTTCACGACTAGGTGTTATGGCCATTACTGACAGTATGAGCATTGATCTG GGAACGGTGATTCGAGATTTCACCTATGGACGGGTAAACCAGGTGATGATTATCGGCTAC GAACGTCTCCTGCGAATTTCTGATCAGTTGCAGTCTGCCAACTTTGATCTGGTCATCTGT GACGAAGGTCATCGAATGAAAACTGCCGGAAACAAAGCCGCTAATGCCATCCAGAGTCTG GGGGTCGCCCGAAAGATCATTCTCAGTGGTACTCCGATCCAGAACGATCTCAAGGAGTTC TTTGTCATGGTTGATTTCCTCAATCCCGGTCTACTGGGCTCTTTCCAGCAGTTCAACAAA GACTACATAATTCCCATTGTGCGGTCTCGTGCACCCGATGCATTCCCCAGTGAGCTCGAA AAGGGTCAAAAACAGTCTGCTCGATTGTCGTCAATCACTGGCCAGTTCATTTTACGTCGA ACTGCTGACATTTTGTCTCGCTTCTTGCCCCCCAAGACTGAGACTGTTCTCTTCTGTCTC CCCAACGCCCAGCAAACGGAAATATACACCAAGCTGTCTTCCGAGTATCTGAATCGACTC GAACGCCACCAAGTTGACTCGTTCAAGTCGATACTGTCACTCAGAAAAGTGTGTAACTCG CCCATTCTTTTGTCTGAGGATGGACCAGCCCTAGACTCGGGAAAGGCATATTTGCGTAAC TCTGGTAAGATGAACACGCTGTTTCGCATGATTGGTCAACTGCGAGCACGTAACAAGATG GATCCTGACAACGCAGAGAAGGTTGTCATTGTATCGTCCTTTACGCAAACTCTGGATGTT ATTGAGGGGCTGGTAAAGGACCTTAAGCTGTCATTCACTCGTCTGGATGGATCCGTACAA GCTTCTGCACGTGCCAAGATTGTCAAACAATTCAATTCTTCTTCCGCAGATAGCTGTTTT GTGTTTCTCTTGTCGGCGCGAGCTGGAGGAGTGGGTATCAATCTGATTGGTGCGTCTCGA TTGTTCCTGTTTGACCCGGATTGGAATCCTGCTGTCGACTTACAAGCCATGGCTCGTATC CATCGAGATGGCCAGAAGAAGCCCGTGTATATCTACCGTCTCCTTACTACTGGATGCATT GACGAGAAGATTTTCCAGCGACAAACTATCAAGACCGGTCTGGCCAACTCCCTGATTGAA GGCACAGAAGAGGCTGATACGTTCACGGATGAGGAGCTCAAGAAACTCTTCTCTATGGAC GTGCTGACCCATTGTAATACGCATGACTTAATGGAGTGCAAGTGTGAACACAATGGAGGT GATCTGGGAGAGGTGGTTGAGGAAGTGCAAGTGACCAAGGCCACAGCTTCAGATTCGTTC ACTACGGCTCGTGAACTGGAGAAGAACCAAGACAAACAACAGAGGAGTCTCAAGAGTTTG CTGGAATACAAGCATATCAGTCCAGATGTTGTTCGTGAGCAATGGGACAGTCTGTCTGAG ATTGGAGATGTGTTGCTGGAGAAGATTGTGGGAGAGAAGAATGATTTGGTTAGTTATATT CTGACCAAGACTTCAGTTCAAGCGTTAGACGAGGTTGATACGGTGGACGTTGTGGAGGAA TGA
>YALI0E24431g.aa MYRRPAKRRVPNPDVLLAPFKPLTQNLPPKTDPKPSISESSDSECASDDDEQEKLRVKRR KLKEQQEEEERQKQEAEKKRQAELREQNRRISKEEAAQMLKAVAEPKRARQADLGVLRSA EEIEQELQIRERKERVESERISARNLSFNALYRKKLGHKKKHKTWDGDGIVVVKGETLSL YTPEGKGIVRGFKLQPQVVVEEGQVLKVGPLEIELESTVVEAQRGVLGMVEDIESRTAVE KGRSASALRESPVPTNDTPEPLSVEATSAVVTETYTLPAPTTFKAVKRLRVKLPQKITEE NFATFIQDVKIDPLLNTALRPHQREAVDFLYRCVMGFNPTSGYGALLADEMGMGKTLMSI ALIWTLLKQTPLKGEPPLAKRVLIVCPVTLVNNWKTEIKKWLGPSRLGVMAITDSMSIDL GTVIRDFTYGRVNQVMIIGYERLLRISDQLQSANFDLVICDEGHRMKTAGNKAANAIQSL GVARKIILSGTPIQNDLKEFFVMVDFLNPGLLGSFQQFNKDYIIPIVRSRAPDAFPSELE KGQKQSARLSSITGQFILRRTADILSRFLPPKTETVLFCLPNAQQTEIYTKLSSEYLNRL ERHQVDSFKSILSLRKVCNSPILLSEDGPALDSGKAYLRNSGKMNTLFRMIGQLRARNKM DPDNAEKVVIVSSFTQTLDVIEGLVKDLKLSFTRLDGSVQASARAKIVKQFNSSSADSCF VFLLSARAGGVGINLIGASRLFLFDPDWNPAVDLQAMARIHRDGQKKPVYIYRLLTTGCI DEKIFQRQTIKTGLANSLIEGTEEADTFTDEELKKLFSMDVLTHCNTHDLMECKCEHNGG DLGEVVEEVQVTKATASDSFTTARELEKNQDKQQRSLKSLLEYKHISPDVVREQWDSLSE IGDVLLEKIVGEKNDLVSYILTKTSVQALDEVDTVDVVEE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0E24431g