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Element type: CDS
Element length: 1899 nucleotides,
on anti-sense strand of
Yali0E: complement(1681783..1683681).
Other names:
YALI-CDS1436.1
YALI-IPF4380
Coding sequence: 633 codons.
Element length: 1899 nucleotides,
on anti-sense strand of
Yali0E: complement(1681783..1683681).
Other names:
YALI-CDS1436.1
YALI-IPF4380
Coding sequence: 633 codons.
Database cross references:
EMBL: CR382131
GeneID: 2911493
HOGENOM: Q6C5Y9
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382131
GeneID: 2911493
HOGENOM: Q6C5Y9
Homologs and Orthologs
Homologs in protein families: GL3C0218 GL3C0218.N2Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0E13970p 
Protein domain map
Database cross references:
InterPro: IPR007518
KEGG: yli:YALI0E13970g
PANTHER: PTHR18063
Pfam: PF04424
RefSeq: XP_503923.1
UniProtKB/TrEMBL: Q6C5Y9
UniprotKB: Q6C5Y9_YARLI
InterPro: IPR007518
KEGG: yli:YALI0E13970g
PANTHER: PTHR18063
Pfam: PF04424
RefSeq: XP_503923.1
UniProtKB/TrEMBL: Q6C5Y9
UniprotKB: Q6C5Y9_YARLI
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>YALI0E13970g.nt GACGAGCTCAAGGGTACATTGCTGGAGCTGGGAATCGCTGAGGTTCTGATTCCCCTCACC TTGTCGGACAACATTGAGGTGCAGGGCAACAGTGCCGCTGCGCTTGGCAACCTGTCTTCC AAGGTGGGCAACTACGACACGTTTGTCAACCACTGGAACGAGCCCAGCGGAGGAATCCGG GAGTTTTTGATCCGGTTCCTCACCAGCGGCGACTCTACGTTTGGCCACATTGCCGTGTGG ACCGTGCTGCAGCTGCTGGAGTCCAAGGACCAGCGTCTTAAGGATCTGCTCAAGAACTCC AATGAGATTGTCGATGCCATCCACCAGCTATCCAGCATGAACTCTGATGGGGCTGACGGC GATGGAGAGGACATGCGGGATTCCAAGAGCGAGGTTGTCATGTTGGCTAAAAAGGTGGCT CCTTTGCTCAAATAGTAGGATGCGATGATTTATTATATATGGAGAAGGAAGACAACTAAT GTATTTGTAATCGGCACTTGGAGTTGTAGATACTGTAGTTTCCATCGTCATATCATATCT CCTTGGAGATAACACAAACTTTGTTATCGGTGTTACCTGTAATAGGCACAATGTAACCTT GTTCATTCACATGTGTGGATGAATAAAAGTGGAGGTGGTGACCTACAATTGTAGATGGAT GACAATCTTAATGGGCCGGCTTCATAGACCAGTGGGGCCGTTGAGGGTGCAAACCGTGTT TTGATAGAGTGGAAAAAGCAACAATCGGGTGAGATTAAAGGTCACGTGTCCTCTTCCTGT TGGTCCGTCGGTCACTCTATGCTGTGTGTCCTCCGAAATGCTCCTGTTGTAGGCTGTGGT ACACCCCCCTAGCACAGCCCCTTTAAACTCGGTCACCGTGCATAGATAGCTCCGATATAA GCATGCTCCCACGGGGAAAACAAGCCCACTACACCGACTTGAAAATTGGAACCGGAAGCG AAAAAACAAACCAACCATATCAAAACAGACAGCTATAGTTATGGATGGATCTGAAGCGAG CATACGGCACATGGAGACGACCGCGAGCGGGGCCATGGAGGACGGCGAAAAGGCGGCGTT GAACACGAGCTCGGAGCCCAGTCGCAACCCCTTTCGCCAGTCTCTGTCTACCGAGCCTCA CTTGATGCCCTCTCCTCCGGCGGACTCGACGCTAAACTCCGATATCGCAAATACCATTGC GGCGGAGGAGACTGACGACCATGCCAAGAGCGCCACAGCGGTCGCGGGCCACGCCCAGGC ACACTCTTGTCCGGCCGTGTATACCACAGAGGCTATGCAGGAACCAGGCGAAGTAGCACA GCCCTCCTCGATCCAGGGGCACACTACAACCACGCCCACGACCTCGGACTTCATTGTCGA ACGCAGCCAGGTCGACATTCCTGCCACCGTGCCCACCACCTCTGTGTCTGCCGTCAACAT CCCCGCCGAACCCGAAAAGATGCACTATCTCGACGTCCAGGGAGGCTCCAGCAACACGCC GTCCGACGTGGACTTTACAAGCTCCATTCGAAACTCGATCCATTCCTTCACATCGTTCCA ACCCAACCCCGCAAACAGAGCCAGCTATATTGGAGACGGCCATGTGGAGGAGCTGGGTCT GCCAGAGGCTGGCAATTCAGACAGTGCCCTGGCTCCCCTGACAGTCAGGTCACCAGTCAG ATCGCCTATCCTGAAGTCTGCTTCTCCTCCTCCTCAGAATATCATCCCAGCACCGCTCAC CTTCAACCCACCAAAGGACAATATCACGTTCCAGGTCAAGGTCATCAAGTGGAGAACACC AGCCAACTACCTGGTCAAAACACCCATCATCCTCCAGGACGAAAACGGCCCGTGTCCCTT CATCGCACTGGTCAACACCCTCGTTTTCACCGAGGCCATGTCTCCCATCCCTCCAGGCCC CGGAAGACCACTTTCTGCTCTTTTGGAGAACAAAGAGATGGTGAGCAAAAACCTGCTACT GGATCATCTCGGACAGTGGCTCCTCAGTATCGGCAGCCGCCAAAGCGGACCTCATATCAA CCCAGACGATCTCAACACCTGTCTACGACTTTTGCCAGAACTATACTCCGGTCTCAACAT CAACCCTCGGTTCGACGGCACGTTTGAAGAAGGGCCCGAGCTGGCTCTCTTCAGAGCCTT TGAGGTGGATGTAGTGCATGGATGGATCGCAGACCCCAAGGAGCCGTACCATGACGATGT AATGGAGGTGGGATCATACGATGCAGCCCAACTATTACAGATCGAGGTTACCGAAGACGG AAAGATGAAACAAAGGGAACGAGAGGTACTGCATCGACAACTGGCAGCCACGTTCGACTT CATGGACGAGAACCCCTCACAGCTGACCACCTACGGTATCCGGTACATTGAGGAGATCCT GGTTCCTGGTTCTGTGTGTGTCTTCTTCAGGAACAACCACTTTGCCACTCTGTACAAACA GCCAACCTCAGGGCGTCTCTTTAGTCTCGTGACAGACAGAGAGCTGTGTGGACGGAACGG AATTGTGTGGATTTCGCTGGAGGGAACTTCGGGAACAGACGATACCTTTTACACCGGAGG CTTTGATTTGGTACAAATGATGACAGACCAGGAACAGGAAGAGTCGAGAAGAAGAGCCCA CCAAACAGTCGAGGCCACCAACGACTTCCATCTCGCCAAGCAGATCCAGGAGCAGGACGA CGCCGAGTACGCCAGACAGATTCAGGAAGAAGACCAACAGCGTCGACGACCCCAGCAGAC AACCACTAGCACGGCAGGTACGACTGCTCGACGACAGCAGCAGCAGACCCGAAGCGGCAA GGCCACTAAAAGCAGACCCGATAAGACCAAAGGAAAAAAATCCAAAGATGGCAAGGATAA AAAGTGTGTCGTGATGTGACTTACAGTCAAAAGAACATCCTTGAAAATCAAAATAAAAGT TACGAATTACGAATAATGATGTTTGGATGGTGCTTGTACGAACAACTATCTGGTTACTGA TGTAGCCATCGACTTCTCTGCTTGAGATCATGTATTTTTCTATTTCGATCTGCGATCATC GCATCATAGACAACCATTGCTCTGTATTATGAATTTTGCTCCCCCAACTCACCATGTACT GCAATATAGCTATGGTTATTACGCAATAAATTACCTATGATACTCATACTCCGCTGAGAC CGTTTTCTTCGTTGTGGAC
Coding sequence
>YALI0E13970g.cds ATGGATGGATCTGAAGCGAGCATACGGCACATGGAGACGACCGCGAGCGGGGCCATGGAG GACGGCGAAAAGGCGGCGTTGAACACGAGCTCGGAGCCCAGTCGCAACCCCTTTCGCCAG TCTCTGTCTACCGAGCCTCACTTGATGCCCTCTCCTCCGGCGGACTCGACGCTAAACTCC GATATCGCAAATACCATTGCGGCGGAGGAGACTGACGACCATGCCAAGAGCGCCACAGCG GTCGCGGGCCACGCCCAGGCACACTCTTGTCCGGCCGTGTATACCACAGAGGCTATGCAG GAACCAGGCGAAGTAGCACAGCCCTCCTCGATCCAGGGGCACACTACAACCACGCCCACG ACCTCGGACTTCATTGTCGAACGCAGCCAGGTCGACATTCCTGCCACCGTGCCCACCACC TCTGTGTCTGCCGTCAACATCCCCGCCGAACCCGAAAAGATGCACTATCTCGACGTCCAG GGAGGCTCCAGCAACACGCCGTCCGACGTGGACTTTACAAGCTCCATTCGAAACTCGATC CATTCCTTCACATCGTTCCAACCCAACCCCGCAAACAGAGCCAGCTATATTGGAGACGGC CATGTGGAGGAGCTGGGTCTGCCAGAGGCTGGCAATTCAGACAGTGCCCTGGCTCCCCTG ACAGTCAGGTCACCAGTCAGATCGCCTATCCTGAAGTCTGCTTCTCCTCCTCCTCAGAAT ATCATCCCAGCACCGCTCACCTTCAACCCACCAAAGGACAATATCACGTTCCAGGTCAAG GTCATCAAGTGGAGAACACCAGCCAACTACCTGGTCAAAACACCCATCATCCTCCAGGAC GAAAACGGCCCGTGTCCCTTCATCGCACTGGTCAACACCCTCGTTTTCACCGAGGCCATG TCTCCCATCCCTCCAGGCCCCGGAAGACCACTTTCTGCTCTTTTGGAGAACAAAGAGATG GTGAGCAAAAACCTGCTACTGGATCATCTCGGACAGTGGCTCCTCAGTATCGGCAGCCGC CAAAGCGGACCTCATATCAACCCAGACGATCTCAACACCTGTCTACGACTTTTGCCAGAA CTATACTCCGGTCTCAACATCAACCCTCGGTTCGACGGCACGTTTGAAGAAGGGCCCGAG CTGGCTCTCTTCAGAGCCTTTGAGGTGGATGTAGTGCATGGATGGATCGCAGACCCCAAG GAGCCGTACCATGACGATGTAATGGAGGTGGGATCATACGATGCAGCCCAACTATTACAG ATCGAGGTTACCGAAGACGGAAAGATGAAACAAAGGGAACGAGAGGTACTGCATCGACAA CTGGCAGCCACGTTCGACTTCATGGACGAGAACCCCTCACAGCTGACCACCTACGGTATC CGGTACATTGAGGAGATCCTGGTTCCTGGTTCTGTGTGTGTCTTCTTCAGGAACAACCAC TTTGCCACTCTGTACAAACAGCCAACCTCAGGGCGTCTCTTTAGTCTCGTGACAGACAGA GAGCTGTGTGGACGGAACGGAATTGTGTGGATTTCGCTGGAGGGAACTTCGGGAACAGAC GATACCTTTTACACCGGAGGCTTTGATTTGGTACAAATGATGACAGACCAGGAACAGGAA GAGTCGAGAAGAAGAGCCCACCAAACAGTCGAGGCCACCAACGACTTCCATCTCGCCAAG CAGATCCAGGAGCAGGACGACGCCGAGTACGCCAGACAGATTCAGGAAGAAGACCAACAG CGTCGACGACCCCAGCAGACAACCACTAGCACGGCAGGTACGACTGCTCGACGACAGCAG CAGCAGACCCGAAGCGGCAAGGCCACTAAAAGCAGACCCGATAAGACCAAAGGAAAAAAA TCCAAAGATGGCAAGGATAAAAAGTGTGTCGTGATGTGA
Predicted translation product
>YALI0E13970g.aa MDGSEASIRHMETTASGAMEDGEKAALNTSSEPSRNPFRQSLSTEPHLMPSPPADSTLNS DIANTIAAEETDDHAKSATAVAGHAQAHSCPAVYTTEAMQEPGEVAQPSSIQGHTTTTPT TSDFIVERSQVDIPATVPTTSVSAVNIPAEPEKMHYLDVQGGSSNTPSDVDFTSSIRNSI HSFTSFQPNPANRASYIGDGHVEELGLPEAGNSDSALAPLTVRSPVRSPILKSASPPPQN IIPAPLTFNPPKDNITFQVKVIKWRTPANYLVKTPIILQDENGPCPFIALVNTLVFTEAM SPIPPGPGRPLSALLENKEMVSKNLLLDHLGQWLLSIGSRQSGPHINPDDLNTCLRLLPE LYSGLNINPRFDGTFEEGPELALFRAFEVDVVHGWIADPKEPYHDDVMEVGSYDAAQLLQ IEVTEDGKMKQREREVLHRQLAATFDFMDENPSQLTTYGIRYIEEILVPGSVCVFFRNNH FATLYKQPTSGRLFSLVTDRELCGRNGIVWISLEGTSGTDDTFYTGGFDLVQMMTDQEQE ESRRRAHQTVEATNDFHLAKQIQEQDDAEYARQIQEEDQQRRRPQQTTTSTAGTTARRQQ QQTRSGKATKSRPDKTKGKKSKDGKDKKCVVM*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0E13970p