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Element type: CDS
Element length: 2070 nucleotides,
on anti-sense strand of
Yali0E: complement(754245..756314).
Other names:
YALI-CDS1197.1
YALI-IPF2358
Coding sequence: 690 codons.
Element length: 2070 nucleotides,
on anti-sense strand of
Yali0E: complement(754245..756314).
Other names:
YALI-CDS1197.1
YALI-IPF2358
Coding sequence: 690 codons.
Database cross references:
EMBL: CR382131
GeneID: 2912402
HOGENOM: Q6C6T0
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382131
GeneID: 2912402
HOGENOM: Q6C6T0
Homologs and Orthologs
Homologs in protein families: GL3C0456 GL3C0456.N3Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0E06567p 
Protein domain map
Database cross references:
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0E06567g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_503632.1
UniProtKB/TrEMBL: Q6C6T0
UniprotKB: Q6C6T0_YARLI
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0E06567g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_503632.1
UniProtKB/TrEMBL: Q6C6T0
UniprotKB: Q6C6T0_YARLI
Gene Ontology terms
| GO:0050660 | FAD binding |
| GO:0009055 | electron carrier activity |
| GO:0006635 | fatty acid beta-oxidation |
| GO:0005777 | peroxisome |
| GO:0003997 | acyl-CoA oxidase activity |
| GO:0003995 | acyl-CoA dehydrogenase activity |
Sequence data
Nucleotide sequence
>YALI0E06567g.nt GCACGTGCAACCAAATGTCACTGTGTGACATGTCTCTCCTACTGTAGCTCGGCTAGTCTG AATTGATTAGTAGTGCGAATCAAAGTTTCGCCAGTGTGGGGTAGCCGTTGACGTCGAGCG AGATTGTGAAAGACAGTGAAGGGAGATTGAGTGGAGAGAGACGGTCATTAAATCCATATA TTTTTGTGCATTATGGCCAATAGTAGATCTCTCGCGTTCACCGCCTACTTTACTACGAGT ACACGCTTCTTACAATATATGCTTGTTCTCATAGAGAAGCGGCACTACAGGCGCTGTACA TCCTTGTACCGGTACCAGTATGTACGATGATTACTATGAGCCGGCATTTTACAACCCTCG ACGAAATTCCCAGAATGTAAAGAGTTTATTGCTTATGACCCTGACTGGTTGTAGTGTATC CACGTACGCGATGAAAGTCGGCTGCTTGGACTCTGTTACCTCCGACTATGCATACCAAGA TGCACCGCTCAAAATGTACAGAAAGTACAGCTACTGGGGCGATATTTCCACTGCAAAAAA AAAACAAACATGTTCAAAGATAAGACCAACTCGGGAATAATTTCAGTCTATCTCGTCCTT TCCACTCCTTTCCGCCATATACCGTTACGGTACTCCTTGGTTCCAACTGCCCCTCTAAAC TCTCAGTTGCCATGATTATTGATACGTGAACGTGAGAAAGAACAAGGTTCAAATAGTGTG GGGTAGTCTTGGGGGAATATGAGGAGGGCAATTATTCTGCGATTCAGCAAGAGATATAGA TTTTTTTAGCATCTCAAGAAGATAAAGGTCCTATTTCAAGTGAATTAACAGTCCCCAATT TCCAACACATCTTTAAACCCCATTCCACAGCCACCCTTCTCCTCCACTACCACCCCGCAA AAGTATATTATTCGTTTATCCGACCCTCGAACTTTATCTCTACATATATACCTTAGCTAC TGTCCACCCTAAAACCCCCTTCTATCTCGTGTACCAAAACATGCTCTCTCAACAGTCCCT CAACACGTTTACCGAGCCCCCGGTCGAAATGGCCCGGGAGCGAAACCAGACTTCCTTCAA CCCGCGTCTGCTGACGTACTTTCTGGACGGAGGCGAAAAGAACACTCTGCTTATGGACCG ACTGATGCAAGAGTACGAGCGAGACCCTGTGTTTCGAAACGAGGGCGACTACGATATTAC CGATGTGGCCCAGTCGCGAGAGCTGGCCTTCAAGCGAATCGCCAAGCTCATCGAGTATGT GCACACCGACGACGAGGAGACGTATCTGTACCGATGCATGCTTCTGGGCCAAATCGATAT GGGAGCCTTTGCCCGGTACGCCATCCACCACGGAGTCTGGGGCGGTGCCATTCGAGGTGC AGGAACGCCTGAGCAGTACGAATTCTGGGTCAAGAAAGGATCTCTGTCGGTTAAGAAGTT CTATGGATCCTTCTCCATGACCGAGCTGGGCCACGGCAGTAACTTGGTGGGTCTGGAGAC CACCGCCACCCTGGACAAGAACGCAGACGAGTTCGTGATCAACACTCCCAACGTTGCTGC CACTAAATGGTGGATCGGAGGAGCCGCCGATACCGCCACTCACACAGCTGTGTTTGCACG TCTCATTGTCGACGGAGAGGACCACGGTGTCAAGACGTTTGTGGTGCAGCTGCGAGACGT GGAGACTCACAACCTGATGCCTGGTATTGCTATCGGAGACTGCGGCAAGAAGATGGGACG TCAGGGAACCGACAACGGCTGGATCCAGTTCACCCATGTGCGAATTCCCCGACAGAACAT GCTCATGCGATACTGTCACGTGGACAGCGACGGAAATGTTACCGAGCCCATGATGGCTCA GATGGCCTACGGAGCTCTTCTGGCTGGCCGAGTCGGAATGGCCATGGACAGTTATTTCAC CTCGCGAAAGTTCCTTACCATTGCTCTTCGATATGCCACCATTCGACGAGCTTTTGCTGC CGGAGGAGGTCAGGAGACCAAGCTGATCGACTACCCTTACCACCAGCGACGTCTGCTCCC CCTCATGGCCCAGACATATGCCATCAAGTGCACCGCCGATAAGGTCAGAGATCAGTTCGT CAAGGTCACCGACATGCTCCTAAACCTCGATGTTTCTGACCAAGAGGCCGTGCCCAAGGC CATTGCCGAGGCTAAGGAGCTCTTCTCTGTTTCTGCTGGTGTCAAGGCTACCACAACTTG GGCTTGCGCACACACCATTGACCAGTGCAGACAGGCGTGTGGAGGCCACGGATACTCTGC TTACAACGGTTTTGGACGTGCTTACTCCGATTGGGTGATCCAGTGCACCTGGGAGGGAGA CAATAACATTCTGTGTCTGTCAGCTGGCAGAGCTCTGGTCCAGTCTAACCGAGCTGTCCG GGCTGGCAAGCCCATTGGAGGTCCTACCGCCTACCTGGCTGCTCCCGCTGGTTCCCCCAA GCTCGCTGGTCGAAACTTGTACGACCCCAAGGTCATGATTGGGGCCTGGGAGACTGTTTC CCGAGCTCTGATCAACCGAACCACCGATGAGTTTGAGGTGCTGGCCAAGAAGGGTCTGTC TACTGCCCAGGCCTACGAGGAGCTGTCCCAGCAACGATTCCTGTGTACTCGAATCCACAC CCGTCTGTACATGGTCAAGAACTTCTACGAGCGAATTGCCGAGGAGGGCACCGAGTTCAC CAAGGAGCCTCTTACCAGACTTGCCAACCTGTACGCCTTCTGGTCCGTCGAAGAGGAGGC TGGAATCTTCCTCCGAGAGGGCTACATCACTCCCCAGGAGCTCAAGTACATCAGTGCCGA GATCCGAAAGCAGCTCTTGGAGGTGCGAAAGGACGTCATTGGCTACACCGATGCCTTCAA CGTGCCTGATTTTTTCCTCAACTCTGCCATTGGACGAGCTGACGGAGATGTCTACAAGAA CTACTTCAAGGTGGTCAACACTCAGAACCCTCCCCAAGACCCTCGACCTCCTTATTACGA GTCTGTCATTAGACCCTTCCTGTTCCGAAAGGACGAGGATGAGGAAATTTGCTCTCTTGA GGATGAGTAGATGGATTGAAGGATATATTGTTACTAATGAACTGTTTTATTTATGTCGTA TGAACTAGCAGACGTTTAGTGTATGTTACTTGGTAGTTAGCATCGTAGACACAACAACTG CTTCTACTGCACTACAAGCACTCATAGTGCGATGGGTCATTTCGAATGGACAGTTAATCA AATGATATGTATTGTACAGTAGGAGTACAGTAGTAAGTATAAGTAAGGAATTGACCAATA CTTGGATGCTCAGATGCTCACTTTTGCATGGAGGTTAGTAGACATACACCACAGCTGCAC TTCGTTGACT
Coding sequence
>YALI0E06567g.cds ATGCTCTCTCAACAGTCCCTCAACACGTTTACCGAGCCCCCGGTCGAAATGGCCCGGGAG CGAAACCAGACTTCCTTCAACCCGCGTCTGCTGACGTACTTTCTGGACGGAGGCGAAAAG AACACTCTGCTTATGGACCGACTGATGCAAGAGTACGAGCGAGACCCTGTGTTTCGAAAC GAGGGCGACTACGATATTACCGATGTGGCCCAGTCGCGAGAGCTGGCCTTCAAGCGAATC GCCAAGCTCATCGAGTATGTGCACACCGACGACGAGGAGACGTATCTGTACCGATGCATG CTTCTGGGCCAAATCGATATGGGAGCCTTTGCCCGGTACGCCATCCACCACGGAGTCTGG GGCGGTGCCATTCGAGGTGCAGGAACGCCTGAGCAGTACGAATTCTGGGTCAAGAAAGGA TCTCTGTCGGTTAAGAAGTTCTATGGATCCTTCTCCATGACCGAGCTGGGCCACGGCAGT AACTTGGTGGGTCTGGAGACCACCGCCACCCTGGACAAGAACGCAGACGAGTTCGTGATC AACACTCCCAACGTTGCTGCCACTAAATGGTGGATCGGAGGAGCCGCCGATACCGCCACT CACACAGCTGTGTTTGCACGTCTCATTGTCGACGGAGAGGACCACGGTGTCAAGACGTTT GTGGTGCAGCTGCGAGACGTGGAGACTCACAACCTGATGCCTGGTATTGCTATCGGAGAC TGCGGCAAGAAGATGGGACGTCAGGGAACCGACAACGGCTGGATCCAGTTCACCCATGTG CGAATTCCCCGACAGAACATGCTCATGCGATACTGTCACGTGGACAGCGACGGAAATGTT ACCGAGCCCATGATGGCTCAGATGGCCTACGGAGCTCTTCTGGCTGGCCGAGTCGGAATG GCCATGGACAGTTATTTCACCTCGCGAAAGTTCCTTACCATTGCTCTTCGATATGCCACC ATTCGACGAGCTTTTGCTGCCGGAGGAGGTCAGGAGACCAAGCTGATCGACTACCCTTAC CACCAGCGACGTCTGCTCCCCCTCATGGCCCAGACATATGCCATCAAGTGCACCGCCGAT AAGGTCAGAGATCAGTTCGTCAAGGTCACCGACATGCTCCTAAACCTCGATGTTTCTGAC CAAGAGGCCGTGCCCAAGGCCATTGCCGAGGCTAAGGAGCTCTTCTCTGTTTCTGCTGGT GTCAAGGCTACCACAACTTGGGCTTGCGCACACACCATTGACCAGTGCAGACAGGCGTGT GGAGGCCACGGATACTCTGCTTACAACGGTTTTGGACGTGCTTACTCCGATTGGGTGATC CAGTGCACCTGGGAGGGAGACAATAACATTCTGTGTCTGTCAGCTGGCAGAGCTCTGGTC CAGTCTAACCGAGCTGTCCGGGCTGGCAAGCCCATTGGAGGTCCTACCGCCTACCTGGCT GCTCCCGCTGGTTCCCCCAAGCTCGCTGGTCGAAACTTGTACGACCCCAAGGTCATGATT GGGGCCTGGGAGACTGTTTCCCGAGCTCTGATCAACCGAACCACCGATGAGTTTGAGGTG CTGGCCAAGAAGGGTCTGTCTACTGCCCAGGCCTACGAGGAGCTGTCCCAGCAACGATTC CTGTGTACTCGAATCCACACCCGTCTGTACATGGTCAAGAACTTCTACGAGCGAATTGCC GAGGAGGGCACCGAGTTCACCAAGGAGCCTCTTACCAGACTTGCCAACCTGTACGCCTTC TGGTCCGTCGAAGAGGAGGCTGGAATCTTCCTCCGAGAGGGCTACATCACTCCCCAGGAG CTCAAGTACATCAGTGCCGAGATCCGAAAGCAGCTCTTGGAGGTGCGAAAGGACGTCATT GGCTACACCGATGCCTTCAACGTGCCTGATTTTTTCCTCAACTCTGCCATTGGACGAGCT GACGGAGATGTCTACAAGAACTACTTCAAGGTGGTCAACACTCAGAACCCTCCCCAAGAC CCTCGACCTCCTTATTACGAGTCTGTCATTAGACCCTTCCTGTTCCGAAAGGACGAGGAT GAGGAAATTTGCTCTCTTGAGGATGAGTAG
Predicted translation product
>YALI0E06567g.aa MLSQQSLNTFTEPPVEMARERNQTSFNPRLLTYFLDGGEKNTLLMDRLMQEYERDPVFRN EGDYDITDVAQSRELAFKRIAKLIEYVHTDDEETYLYRCMLLGQIDMGAFARYAIHHGVW GGAIRGAGTPEQYEFWVKKGSLSVKKFYGSFSMTELGHGSNLVGLETTATLDKNADEFVI NTPNVAATKWWIGGAADTATHTAVFARLIVDGEDHGVKTFVVQLRDVETHNLMPGIAIGD CGKKMGRQGTDNGWIQFTHVRIPRQNMLMRYCHVDSDGNVTEPMMAQMAYGALLAGRVGM AMDSYFTSRKFLTIALRYATIRRAFAAGGGQETKLIDYPYHQRRLLPLMAQTYAIKCTAD KVRDQFVKVTDMLLNLDVSDQEAVPKAIAEAKELFSVSAGVKATTTWACAHTIDQCRQAC GGHGYSAYNGFGRAYSDWVIQCTWEGDNNILCLSAGRALVQSNRAVRAGKPIGGPTAYLA APAGSPKLAGRNLYDPKVMIGAWETVSRALINRTTDEFEVLAKKGLSTAQAYEELSQQRF LCTRIHTRLYMVKNFYERIAEEGTEFTKEPLTRLANLYAFWSVEEEAGIFLREGYITPQE LKYISAEIRKQLLEVRKDVIGYTDAFNVPDFFLNSAIGRADGDVYKNYFKVVNTQNPPQD PRPPYYESVIRPFLFRKDEDEEICSLEDE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0E06567p