YALI0E02332g


similar to DEHA0C09174g Debaryomyces hansenii and uniprot|Q08773 Saccharomyces cerevisiae YOR304w ISW2

Genomic environment map

Element type: CDS
Element length: 3146 nucleotides,
on anti-sense strand of
Yali0E: complement(join(256357..259398,259458..259502)).
Other names:
YALI-IPF40269
Coding sequence: 1029 codons.
Database cross references:
EMBL: CR382131
GeneID: 2912094
GenomeReviews: CR382131_GR
HOGENOM: HBG717285

Computed results  

None available yet


Protein YALI0E02332p  


similar to DEHA0C09174g Debaryomyces hansenii and uniprot|Q08773 Saccharomyces cerevisiae YOR304w ISW2; SubName: Full=YALI0E02332p;

Protein domain map

Protein length: 1028 amino acids
Protein family: GL3M4588
Database cross references:
InterPro: IPR000330
InterPro: IPR001005
InterPro: IPR001650
InterPro: IPR009057
InterPro: IPR014001
InterPro: IPR014021
InterPro: IPR015194
InterPro: IPR015195
InterPro: IPR017884
KEGG: yli:YALI0E02332g
PROSITE: PS51192
PROSITE: PS51194
PROSITE: PS51293
Pfam: PF00176
Pfam: PF00271
Pfam: PF09110
Pfam: PF09111
RefSeq: XP_503455.1
SMART: SM00487
SMART: SM00490
SMART: SM00717
UniProtKB/TrEMBL: Q6C7A7
UniProtKB: Q6C7A7_YARLI

Phylogeny  

PhylomeDB:YALI0E02332g

Computed results for YALI0E02332p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  


Sequence data  


Nucleotide sequence    

>YALI0E02332g.nt
ATGTCTGGACCAGCACCCATAGACTTGGATAAGTCCAATCCAGGAGTGAGTACCGTTGCA
AAACTGCCCCTTGATCCTCTCATCACGACTTTTACTAACCCCAGTCTTCCATGGTTTCCA
CCGTGACGACCCCAAACAGGGACACGCCTCCAGTCCAGCTGTCGACCGAAGATCTGCTCA
ACATCCGATCGGGCTATCTGCTTCCCGACAAGGGTCTTGGTAAGCCCAAGCAGAAGTCCA
TTCCCGAACTCGTCAAGAAAATCAAACATCTTTACGGGCTGAGCGACGTTTTTGAGTACT
TCCTGAAGTCCAAGGGAGAGTCCGACCCCAATTACAGAAAGGCCATGGAACAGGCAAAGG
AGGAGCTCGGTCTTAACAAGACCACCGAGAAACCCACCGGTGGCGCGCGACACAGAAAGA
CCGAGAAGGAAGAAGACGCTGAGCTGATGCAGGGAGAGGAGGAGGCCGAGAACTCGGTCG
AAACCGTCTTCGAGACTTCTCCTGGCTACATTCAGGGAACTCTGCGAGAGTACCAAGTTC
AGGGCCTCAACTGGATGGTCTCTCTTTATGAGCATGGTCTTTCTGGCATTCTGGCCGACG
AAATGGGTCTTGGTAAGACTCTGCAGACCATCTCTTTCCTGGGATACCTTCGATACTTCC
GTGGAATTCCCGGTCCTCATTTGGTCTGTGTTCCCAAGTCTACCCTGGACAACTGGGCCC
GAGAGTTTGCCAAATGGACTCCTGAGGTCAACGTTCTTGTTCTTCAGGGAGACAAGGAGG
GCCGAGCTCAGCTTATCCAGGATCGGCTTCTGACCTGCGACTTTGACGTATGCATTACCT
CCTACGAGATGGTTCTTCGAGAGAAGGGATATCTGCGACGGTTTGCTTGGCAATACATTG
TGATTGATGAGGCTCATCGAATCAAGAACGAGGAGTCTTCTCTGTCACAGATCATCCGTC
TGTTCCACACCGAAAACCGACTGTTGATCACCGGTACTCCTTTGCAAAACAACCTGCACG
AGCTGTGGGCTCTTCTGAACTATATTCTCCCCGACGTGTTCCAGGACTCTGCGGCTTTTG
ATGCCTGGTTCGGTGAAGACCAGAGTGGAGACCAGGACGCAGCCGTGAACCAGCTGCATA
AGATTCTGCGGCCATTCCTACTCCGACGAGTCAAGGCCGATGTCGAGAAGTCTCTTTTGC
CCAAGAAGGAGATCAACCTCTACGTTGGCATGTCCGACATGCAGGTTAAATGGTACCAGA
AAATTCTCGAGAAGGACATTGACGCTGTCAACGGTCAGATTGGCAAGCGTGAGGGCAAAA
CCCGGCTTCTCAACATTGTGATGCAGCTGCGAAAGTGCTGCAACCATCCCTATTTGTTCG
AGGGTGCCGAGCCTGGACCTCCTTACACCACTGATGAGCATCTTGTCTACAATGCTGGCA
AGATGGTGATTCTCGACAAGCTTCTGAAGCGAATTCAGGAGCAGGGATCTCGTGTTCTTA
TCTTCTCCCAGATGAGTCGAGTCCTTGATATTCTTGAGGATTACTGTCTGTTCCGAGGTT
ACAAGTATTGTCGAATTGATGGTCAGACTGCGCATGAGGACCGAATCAACGCCATTGATG
CCTACAACAAGGAGGGATCCGAGAAGTTTGTGTTCTTGCTGACAACTCGAGCTGGTGGTC
TCGGTATCAATTTGACTACTGCCGACCAAGTTGTCCTTTACGACTCTGACTGGAACCCTC
AAGCTGATCTTCAGGCCATGGATCGAGCTCATCGAATTGGACAAACCAAGCAGGTTTATG
TCTACCGATTCATTACTGAAAACGCTGTCGAGGAGAAGGTCATCGAGCGAGCTACACAGA
AGCTGCGTCTGGACAAGCTGGTTATTCAGCAAGGCCGATCGCAATCCAAAGTCAACAACA
ACGCCCAGAACAAGGATGATCTGCTTAATATGATTCAATTTGGTGCCGAGAAGGTGTTCA
ACCGAGGAAAGGGCGAGGAACAGGAGGAGGCTGATCTTGATATTGACGACATTCTCAAGC
GAGGCCAGCAGAAGACTATGGAGCTCAACTCCCGTTACGACTCTCTTGGTCTTGATGATC
TGCAAAAGTTCACTTCCGATTCTGCCTACGAATGGAACGGAGAGGATTTCAAGAAGAAGG
ACACCAGCAAGACTAACAAGCCCTTCGTGTGGATTGCACCCAACAAGCGTGAGCGAAAGG
AAAACTACTCCATCGACTCGTACTACCGAGAAATGCTTAACCAGGGCGCTGCTGCGGGCA
AGAACGCTGCGCCCAAGGCCCCCAAGGCCCCCAAGCAGCTGAACATCCAGGACCATCAGT
TCTACCCCCAGCGACTTATCGACATTCAGGAGAAGGAGACTTCTTACTACCGAAAGCAAA
TTGGTTACAAGGTGCCTCTTCCCGATGGAGCTGAAGAAGAGCTTGAGATGCGAGAGAGCG
AGCGAGATCTTGAGCAGCAGGAGATTGACAACGCCGAGCCTCTCACCGAGGAGGAAGAGG
AGGAGAAGGTAGACCTGTCCACTAAGGGTTTCTCCAACTGGAACCGACGAGATTTCACAA
ATTTCATCCAGGCTTCGGCGCGTCATGGTCGAAACAACTTTGCTGCCATTGCCACAGAGT
TCGAGGACAAGACCCAAGCCGATATCAAGAAGTACGCTGGCGTGTTCTGGCAACGATACA
CTGAGATCAACGGCTTTGACAGATACATTCAGCAGATCGAGGCAGGTGAGGACAAGGCCA
AGAAGCAGAACCATCAAAACACTCTTCTAACCCGAAAGGTGGAGGGCTATGAGGCCCCTC
TACAGCAGATGGTCATTGTCTACCCTGCAGGCCAGAAGAAAATCTACTCTGAGGACGAGG
ATCGGTATATTCTGGTTCAACTCTACAGGTACGGCCTTGAGACTGAGGGTGTTTATGAGA
TGATCCGAGACGCCATTCGAGCATCACCCGTGTTCCGATTCGACTGGTTCTTCCTGTCGA
GGACTCCTGCAGAGCTTGCGCGACGAGGCCAGACTCTGCTTTCTTACGTTGGTAAAGAGT
ACGATGGTGCTGGCGAGAAGCGAAAATCGTCTTCCACCCCCGACGTCGAGACTCCCAAAA
AGTCTGCCAAGAAGAAGAAGGCGTAG3">

Coding sequence    

>YALI0E02332g.cds
ATGTCTGGACCAGCACCCATAGACTTGGATAAGTCCAATCCAGGATCTTCCATGGTTTCC
ACCGTGACGACCCCAAACAGGGACACGCCTCCAGTCCAGCTGTCGACCGAAGATCTGCTC
AACATCCGATCGGGCTATCTGCTTCCCGACAAGGGTCTTGGTAAGCCCAAGCAGAAGTCC
ATTCCCGAACTCGTCAAGAAAATCAAACATCTTTACGGGCTGAGCGACGTTTTTGAGTAC
TTCCTGAAGTCCAAGGGAGAGTCCGACCCCAATTACAGAAAGGCCATGGAACAGGCAAAG
GAGGAGCTCGGTCTTAACAAGACCACCGAGAAACCCACCGGTGGCGCGCGACACAGAAAG
ACCGAGAAGGAAGAAGACGCTGAGCTGATGCAGGGAGAGGAGGAGGCCGAGAACTCGGTC
GAAACCGTCTTCGAGACTTCTCCTGGCTACATTCAGGGAACTCTGCGAGAGTACCAAGTT
CAGGGCCTCAACTGGATGGTCTCTCTTTATGAGCATGGTCTTTCTGGCATTCTGGCCGAC
GAAATGGGTCTTGGTAAGACTCTGCAGACCATCTCTTTCCTGGGATACCTTCGATACTTC
CGTGGAATTCCCGGTCCTCATTTGGTCTGTGTTCCCAAGTCTACCCTGGACAACTGGGCC
CGAGAGTTTGCCAAATGGACTCCTGAGGTCAACGTTCTTGTTCTTCAGGGAGACAAGGAG
GGCCGAGCTCAGCTTATCCAGGATCGGCTTCTGACCTGCGACTTTGACGTATGCATTACC
TCCTACGAGATGGTTCTTCGAGAGAAGGGATATCTGCGACGGTTTGCTTGGCAATACATT
GTGATTGATGAGGCTCATCGAATCAAGAACGAGGAGTCTTCTCTGTCACAGATCATCCGT
CTGTTCCACACCGAAAACCGACTGTTGATCACCGGTACTCCTTTGCAAAACAACCTGCAC
GAGCTGTGGGCTCTTCTGAACTATATTCTCCCCGACGTGTTCCAGGACTCTGCGGCTTTT
GATGCCTGGTTCGGTGAAGACCAGAGTGGAGACCAGGACGCAGCCGTGAACCAGCTGCAT
AAGATTCTGCGGCCATTCCTACTCCGACGAGTCAAGGCCGATGTCGAGAAGTCTCTTTTG
CCCAAGAAGGAGATCAACCTCTACGTTGGCATGTCCGACATGCAGGTTAAATGGTACCAG
AAAATTCTCGAGAAGGACATTGACGCTGTCAACGGTCAGATTGGCAAGCGTGAGGGCAAA
ACCCGGCTTCTCAACATTGTGATGCAGCTGCGAAAGTGCTGCAACCATCCCTATTTGTTC
GAGGGTGCCGAGCCTGGACCTCCTTACACCACTGATGAGCATCTTGTCTACAATGCTGGC
AAGATGGTGATTCTCGACAAGCTTCTGAAGCGAATTCAGGAGCAGGGATCTCGTGTTCTT
ATCTTCTCCCAGATGAGTCGAGTCCTTGATATTCTTGAGGATTACTGTCTGTTCCGAGGT
TACAAGTATTGTCGAATTGATGGTCAGACTGCGCATGAGGACCGAATCAACGCCATTGAT
GCCTACAACAAGGAGGGATCCGAGAAGTTTGTGTTCTTGCTGACAACTCGAGCTGGTGGT
CTCGGTATCAATTTGACTACTGCCGACCAAGTTGTCCTTTACGACTCTGACTGGAACCCT
CAAGCTGATCTTCAGGCCATGGATCGAGCTCATCGAATTGGACAAACCAAGCAGGTTTAT
GTCTACCGATTCATTACTGAAAACGCTGTCGAGGAGAAGGTCATCGAGCGAGCTACACAG
AAGCTGCGTCTGGACAAGCTGGTTATTCAGCAAGGCCGATCGCAATCCAAAGTCAACAAC
AACGCCCAGAACAAGGATGATCTGCTTAATATGATTCAATTTGGTGCCGAGAAGGTGTTC
AACCGAGGAAAGGGCGAGGAACAGGAGGAGGCTGATCTTGATATTGACGACATTCTCAAG
CGAGGCCAGCAGAAGACTATGGAGCTCAACTCCCGTTACGACTCTCTTGGTCTTGATGAT
CTGCAAAAGTTCACTTCCGATTCTGCCTACGAATGGAACGGAGAGGATTTCAAGAAGAAG
GACACCAGCAAGACTAACAAGCCCTTCGTGTGGATTGCACCCAACAAGCGTGAGCGAAAG
GAAAACTACTCCATCGACTCGTACTACCGAGAAATGCTTAACCAGGGCGCTGCTGCGGGC
AAGAACGCTGCGCCCAAGGCCCCCAAGGCCCCCAAGCAGCTGAACATCCAGGACCATCAG
TTCTACCCCCAGCGACTTATCGACATTCAGGAGAAGGAGACTTCTTACTACCGAAAGCAA
ATTGGTTACAAGGTGCCTCTTCCCGATGGAGCTGAAGAAGAGCTTGAGATGCGAGAGAGC
GAGCGAGATCTTGAGCAGCAGGAGATTGACAACGCCGAGCCTCTCACCGAGGAGGAAGAG
GAGGAGAAGGTAGACCTGTCCACTAAGGGTTTCTCCAACTGGAACCGACGAGATTTCACA
AATTTCATCCAGGCTTCGGCGCGTCATGGTCGAAACAACTTTGCTGCCATTGCCACAGAG
TTCGAGGACAAGACCCAAGCCGATATCAAGAAGTACGCTGGCGTGTTCTGGCAACGATAC
ACTGAGATCAACGGCTTTGACAGATACATTCAGCAGATCGAGGCAGGTGAGGACAAGGCC
AAGAAGCAGAACCATCAAAACACTCTTCTAACCCGAAAGGTGGAGGGCTATGAGGCCCCT
CTACAGCAGATGGTCATTGTCTACCCTGCAGGCCAGAAGAAAATCTACTCTGAGGACGAG
GATCGGTATATTCTGGTTCAACTCTACAGGTACGGCCTTGAGACTGAGGGTGTTTATGAG
ATGATCCGAGACGCCATTCGAGCATCACCCGTGTTCCGATTCGACTGGTTCTTCCTGTCG
AGGACTCCTGCAGAGCTTGCGCGACGAGGCCAGACTCTGCTTTCTTACGTTGGTAAAGAG
TACGATGGTGCTGGCGAGAAGCGAAAATCGTCTTCCACCCCCGACGTCGAGACTCCCAAA
AAGTCTGCCAAGAAGAAGAAGGCGTAG

Predicted translation product    

>YALI0E02332g.aa
MSGPAPIDLDKSNPGSSMVSTVTTPNRDTPPVQLSTEDLLNIRSGYLLPDKGLGKPKQKS
IPELVKKIKHLYGLSDVFEYFLKSKGESDPNYRKAMEQAKEELGLNKTTEKPTGGARHRK
TEKEEDAELMQGEEEAENSVETVFETSPGYIQGTLREYQVQGLNWMVSLYEHGLSGILAD
EMGLGKTLQTISFLGYLRYFRGIPGPHLVCVPKSTLDNWAREFAKWTPEVNVLVLQGDKE
GRAQLIQDRLLTCDFDVCITSYEMVLREKGYLRRFAWQYIVIDEAHRIKNEESSLSQIIR
LFHTENRLLITGTPLQNNLHELWALLNYILPDVFQDSAAFDAWFGEDQSGDQDAAVNQLH
KILRPFLLRRVKADVEKSLLPKKEINLYVGMSDMQVKWYQKILEKDIDAVNGQIGKREGK
TRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLVYNAGKMVILDKLLKRIQEQGSRVL
IFSQMSRVLDILEDYCLFRGYKYCRIDGQTAHEDRINAIDAYNKEGSEKFVFLLTTRAGG
LGINLTTADQVVLYDSDWNPQADLQAMDRAHRIGQTKQVYVYRFITENAVEEKVIERATQ
KLRLDKLVIQQGRSQSKVNNNAQNKDDLLNMIQFGAEKVFNRGKGEEQEEADLDIDDILK
RGQQKTMELNSRYDSLGLDDLQKFTSDSAYEWNGEDFKKKDTSKTNKPFVWIAPNKRERK
ENYSIDSYYREMLNQGAAAGKNAAPKAPKAPKQLNIQDHQFYPQRLIDIQEKETSYYRKQ
IGYKVPLPDGAEEELEMRESERDLEQQEIDNAEPLTEEEEEEKVDLSTKGFSNWNRRDFT
NFIQASARHGRNNFAAIATEFEDKTQADIKKYAGVFWQRYTEINGFDRYIQQIEAGEDKA
KKQNHQNTLLTRKVEGYEAPLQQMVIVYPAGQKKIYSEDEDRYILVQLYRYGLETEGVYE
MIRDAIRASPVFRFDWFFLSRTPAELARRGQTLLSYVGKEYDGAGEKRKSSSTPDVETPK
KSAKKKKA*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites