YALI0D24750g

uniprot|O74936 Yarrowia lipolytica YALI0D24750g POX3 Acyl-CoA oxidase 3 (EC 1.3.3.6), peroxisomal, specific toward short chain fatty acid

Genomic environment map

Element type: CDS
Element length: 2103 nucleotides,
on anti-sense strand of
Yali0D: complement(3291579..3293681).
Other names:
YALI-CDS1164.1
YALI-IPF6432
Coding sequence: 701 codons.

Database cross references:
EMBL: AJ001301
EMBL: CR382130
GeneID: 2910308
HOGENOM: O74936

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0456
Consensus family of 16 members, scrltkgdy (1 1 1 1 1 1 1 3 6)
16-member family, phyletic pattern sczltkgdy, profile (1 1 1 1 1 1 1 3 6)
Proteins: SACE0G01364p CAGL0A03740p ZYRO0E08338p SAKL0F02068p KLTH0G01914p KLLA0F09933p ERGO0E16500p DEHA2C01078p DEHA2D17204p DEHA2D17248p YALI0C23859p YALI0D24750p YALI0E06567p YALI0E27654p YALI0E32835p YALI0F10857p
Search in: Génolevures Google

Génolevures family GL3C0456.N1
Nine-SONS subgroup of a Consensus family
12-member family, phyletic pattern sczltkgdy, profile (1 1 1 1 1 1 1 2 3)
Proteins: SACE0G01364p CAGL0A03740p ZYRO0E08338p SAKL0F02068p KLTH0G01914p KLLA0F09933p ERGO0E16500p DEHA2D17204p DEHA2D17248p YALI0D24750p YALI0E27654p YALI0E32835p
Search in: Génolevures Google

Homologs in protein families: GL3C0456 GL3C0456.N1
Orthologs: strict determination not possible; homologs must be refined manually

Protein YALI0D24750p

uniprot|O74936 Yarrowia lipolytica POX3 Acyl-CoA oxidase 3 (EC 1.3.3.6), peroxisomal, specific toward short chain fatty acid

Protein domain map

Protein length: 700 amino acids
Protein family: GL3C0456

Database cross references:
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
HSSP: P07872
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0D24750g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_503244.1
UniProtKB/Swiss-Prot: O74936
UniprotKB: ACOX3_YARLI

Computed results for YALI0D24750p

Blastp Genolevures

Blastp Uniprot

Gene Ontology terms

None available yet

Sequence data

Nucleotide sequence

>YALI0D24750g.nt
TAGTGTTTTTGTTGGTTTTTATTTGATTTGTTGGTTTAATATTTATTTTATTTTAATATT
TATTTTATTTTATTTCAATTAATTATTTTATTTATTTGCTTAAATCAAATATTTTGGACC
AATAAAAACCGACACAGTTTTCAGACATGTTTGTAGCTCATATGTATCAGGTGTGGTTGT
GGGGTATCAAAGCCGAGGTTGGCAAATTTTACTGGGGCCTTCAGAACGGTAAAAATAGAC
CAATCAGAATTCTGAAAAGCACATCTTGATCTCCTCATTGCGGGGAGTCCAACGGTGGTC
TTATTCCCCCGAATTTCCCGCTCAATATCGTTCCAGACCGACCCGGACACAGTGCTTAAC
GCCGTTCCGAAACTCTACCGCAGATATGCTCCAACGGACTGGGCTGCATAGATGTGATCC
TCGGCTTGGAGAAATGGATAAAAGCCGGCCAAAAAAAAAGCGGAAAAAAGCGGAAAAAAA
GAGAAAAAAAATCGCAAAATCGGAAAAATAGGGGGAAAAGACGCAAAAACGCAAGGAGGG
GGGAGTATATGACACTGATAAGCAAGCTCACAACGGTTCCTCTTATTTTTTTCCTCATCT
TCTGCCTAGGTTCCCAAAATCCCAGATGCTTCTCTCCAGTGCCAAAAGTAAGTACCCCAC
AGGTTTTCGGCCGAAAATTCCACGTGCAGCAACGTCGTGTGGGGTGTTAAAATGTGGGGG
GGGGACCAGGACAAGAGGCTCTTGTGGGAGCCGAATGAGAGCACAAAGCGGGCGGGTGTG
ATAAGGGCATTTTTGCCCATTTTCCCTTCTCCTGTCTCTCCGACGGTGATGGCGTTGTGC
GTCCTCTATTTCTTTTTATTTCTTTTTGTTTTATTTCTCTGACTACCGATTTGGTTTGAT
TTCCTCAACCCCACACAAATAAGCTCGGGCCGAGGAATATATATATACACGGACACAGTC
GCCCTGTGGACAACACGTCACTACCTCTACGATACACACAATGATCTCCCCCAACCTCAC
AGCTAACGTCGAGATTGACGGCAAGCAGTACAACACCTTCACAGAGCCACCCAAGGCGCT
CGCCGGCGAGCGAGCCAAGGTCAAGTTCCCCATCAAGGACATGACGGAGTTTCTGCACGG
TGGCGAGGAGAACGTGACCATGATCGAGCGACTGATGACGGAGCTCGAGCGAGACCCCGT
GCTCAACGTGTCGGGCGACTACGACATGCCCAAGGAGCAGCTGCGAGAGACGGCCGTGGC
GCGAATTGCGGCGCTGTCCGGCCACTGGAAGAAGGACACAGAAAAGGAGGCGCTGCTGCG
GTCCCAGCTGCACGGCATTGTGGACATGGGCACCCGAATCCGACTCGGTGTGCACACGGG
CCTGTTCATGGGCGCCATCCGGGGTTCCGGCACCAAGGAGCAGTACGACTACTGGGTGCG
AAAGGGCGCCGCGGACGTCAAGGGCTTCTACGGCTGCTTTGCTATGACCGAGCTGGGCCA
TGGCTCCAACGTGGCCGGTCTTGAGACCACCGCCACCTACATCCAGGACACGGACGAGTT
CATCATCAACACCCCCAACACTGGAGCCACCAAGTGGTGGATTGGAGGAGCCGCCCACTC
GGCCACCCACACCGCCTGCTTTGCTCGTCTGCTTGTCGACGGCAAGGACTACGGCGTCAA
GATCTTTGTTGTCCAGCTGCGAGACGTCTCTTCTCACTCTCTCATGCCCGGCATCGCTCT
CGGCGACATTGGAAAGAAGATGGGCCGAGACGCCATCGACAACGGCTGGATCCAGTTCAC
CAATGTGCGAATCCCCCGACAGAACATGCTCATGAAGTACGCCAAGGTCTCGTCTACCGG
CAAGGTGTCGCAGCCTCCTCTGGCCCAGCTCACCTACGGCGCTCTCATTGGCGGCCGAGT
CACCATGATTGCCGACTCCTTCTTTGTCTCCCAGCGATTCATCACCATTGCTCTGCGATA
CGCCTGTGTGCGACGACAGTTTGGCACCACCCCCGGCCAGCCCGAGACTAAGATCATCGA
CTACCCCTACCATCAGCGACGTCTGCTGCCTCTTCTGGCCTTCACCTACGCCATGAAGAT
GGCCGCCGACCAGTCCCAGATTCAGTACGATCAGACCACCGATCTGCTGCAGACCATCGA
CCCTAAGGACAAGGGCGCTCTGGGCAAGGCCATTGTCGACCTCAAGGAGCTGTTTGCCTC
TTCTGCTGGTCTCAAGGCCTTCACCACCTGGACCTGTGCCAACATCATTGACCAGTGCCG
ACAGGCCTGCGGTGGCCACGGCTACTCTGGCTACAACGGCTTTGGCCAGGCCTACGCCGA
CTGGGTTGTCCAGTGCACCTGGGAGGGTGACAACAACGTCCTGTGTCTGTCCATGGGCCG
AGGTCTCATCCAGTCGTGTCTGGGCCACCGAAAGGGTAAGCCTCTGGGCTCTTCTGTCGG
CTACCTGGCTAACAAGGGTCTTGAGCAGGCTACTCTGAGCGGCCGAGACCTCAAGGACCC
CAAGGTTCTCATCGAGGCCTGGGAGAAGGTCGCCAACGGCGCCATCCAGCGGGCCACTGA
CAAATTTGTCGAGCTCACCAAGGGCGGCCTCTCTCCTGACCAGGCCTTTGAGGAGCTGTC
GCAGCAGCGATTCCAGTGTGCCAAGATCCACACCCGAAAGCACCTGGTGACTGCCTTCTA
CGAGCGAATCAACGCCTCTGCGAAGGCCGACGTCAAGCCTTACCTCATCAACCTCGCCAA
CCTCTTCACTCTGTGGTCCATTGAGGAGGACTCTGGTCTCTTCCTGCGAGAGGGTTTCCT
GCAGCCCAAGGACATTGACCAGGTGACTGAGCTGGTGAACCACTACTGCAAGGAGGTTCG
AGACCAGGTTGCCGGCTACACCGATGCCTTTGGTCTGTCTGACTGGTTCATCAACGCTCC
CATTGGAAACTACGATGGTGACGTTTACAAGCATTACTTTGCCAAGGTTAACCAGCAGAA
CCCTGCTCAGAACCCCCGACCTCCTTACTATGAGAGCACTCTTCGACCTTTCCTGTTCCG
AGAGGATGAGGATGACGACATTTGCGAGCTGGACGAGGAATAGATGGAGCGTGTGTTCTG
AGTCGATGTTTTCTATGGAGTTGTGAGTGTTAGTAGACATGATGGGTTTATATATGATGA
ATGAATAGATGTGATTTTGATTTGCACGATGGAATTGAGAACTTTGTAAACGTACATGGG
AATGTATGAATGTGGGGGTTTTGTGACTGGATAACTGACGGTCAGTGGACGCCGTTGTTC
AAATATCCAAGAGATGCGAGAAACTTTGGGTCAAGTGAACATGTCCTCTCTGTTCAAGTA
AACCATCAACTATGGGTAGTATATTTAGTAAGGACAGGAGTTG

Coding sequence

>YALI0D24750g.cds
ATGATCTCCCCCAACCTCACAGCTAACGTCGAGATTGACGGCAAGCAGTACAACACCTTC
ACAGAGCCACCCAAGGCGCTCGCCGGCGAGCGAGCCAAGGTCAAGTTCCCCATCAAGGAC
ATGACGGAGTTTCTGCACGGTGGCGAGGAGAACGTGACCATGATCGAGCGACTGATGACG
GAGCTCGAGCGAGACCCCGTGCTCAACGTGTCGGGCGACTACGACATGCCCAAGGAGCAG
CTGCGAGAGACGGCCGTGGCGCGAATTGCGGCGCTGTCCGGCCACTGGAAGAAGGACACA
GAAAAGGAGGCGCTGCTGCGGTCCCAGCTGCACGGCATTGTGGACATGGGCACCCGAATC
CGACTCGGTGTGCACACGGGCCTGTTCATGGGCGCCATCCGGGGTTCCGGCACCAAGGAG
CAGTACGACTACTGGGTGCGAAAGGGCGCCGCGGACGTCAAGGGCTTCTACGGCTGCTTT
GCTATGACCGAGCTGGGCCATGGCTCCAACGTGGCCGGTCTTGAGACCACCGCCACCTAC
ATCCAGGACACGGACGAGTTCATCATCAACACCCCCAACACTGGAGCCACCAAGTGGTGG
ATTGGAGGAGCCGCCCACTCGGCCACCCACACCGCCTGCTTTGCTCGTCTGCTTGTCGAC
GGCAAGGACTACGGCGTCAAGATCTTTGTTGTCCAGCTGCGAGACGTCTCTTCTCACTCT
CTCATGCCCGGCATCGCTCTCGGCGACATTGGAAAGAAGATGGGCCGAGACGCCATCGAC
AACGGCTGGATCCAGTTCACCAATGTGCGAATCCCCCGACAGAACATGCTCATGAAGTAC
GCCAAGGTCTCGTCTACCGGCAAGGTGTCGCAGCCTCCTCTGGCCCAGCTCACCTACGGC
GCTCTCATTGGCGGCCGAGTCACCATGATTGCCGACTCCTTCTTTGTCTCCCAGCGATTC
ATCACCATTGCTCTGCGATACGCCTGTGTGCGACGACAGTTTGGCACCACCCCCGGCCAG
CCCGAGACTAAGATCATCGACTACCCCTACCATCAGCGACGTCTGCTGCCTCTTCTGGCC
TTCACCTACGCCATGAAGATGGCCGCCGACCAGTCCCAGATTCAGTACGATCAGACCACC
GATCTGCTGCAGACCATCGACCCTAAGGACAAGGGCGCTCTGGGCAAGGCCATTGTCGAC
CTCAAGGAGCTGTTTGCCTCTTCTGCTGGTCTCAAGGCCTTCACCACCTGGACCTGTGCC
AACATCATTGACCAGTGCCGACAGGCCTGCGGTGGCCACGGCTACTCTGGCTACAACGGC
TTTGGCCAGGCCTACGCCGACTGGGTTGTCCAGTGCACCTGGGAGGGTGACAACAACGTC
CTGTGTCTGTCCATGGGCCGAGGTCTCATCCAGTCGTGTCTGGGCCACCGAAAGGGTAAG
CCTCTGGGCTCTTCTGTCGGCTACCTGGCTAACAAGGGTCTTGAGCAGGCTACTCTGAGC
GGCCGAGACCTCAAGGACCCCAAGGTTCTCATCGAGGCCTGGGAGAAGGTCGCCAACGGC
GCCATCCAGCGGGCCACTGACAAATTTGTCGAGCTCACCAAGGGCGGCCTCTCTCCTGAC
CAGGCCTTTGAGGAGCTGTCGCAGCAGCGATTCCAGTGTGCCAAGATCCACACCCGAAAG
CACCTGGTGACTGCCTTCTACGAGCGAATCAACGCCTCTGCGAAGGCCGACGTCAAGCCT
TACCTCATCAACCTCGCCAACCTCTTCACTCTGTGGTCCATTGAGGAGGACTCTGGTCTC
TTCCTGCGAGAGGGTTTCCTGCAGCCCAAGGACATTGACCAGGTGACTGAGCTGGTGAAC
CACTACTGCAAGGAGGTTCGAGACCAGGTTGCCGGCTACACCGATGCCTTTGGTCTGTCT
GACTGGTTCATCAACGCTCCCATTGGAAACTACGATGGTGACGTTTACAAGCATTACTTT
GCCAAGGTTAACCAGCAGAACCCTGCTCAGAACCCCCGACCTCCTTACTATGAGAGCACT
CTTCGACCTTTCCTGTTCCGAGAGGATGAGGATGACGACATTTGCGAGCTGGACGAGGAA
TAG

Predicted translation product

>YALI0D24750g.aa
MISPNLTANVEIDGKQYNTFTEPPKALAGERAKVKFPIKDMTEFLHGGEENVTMIERLMT
ELERDPVLNVSGDYDMPKEQLRETAVARIAALSGHWKKDTEKEALLRSQLHGIVDMGTRI
RLGVHTGLFMGAIRGSGTKEQYDYWVRKGAADVKGFYGCFAMTELGHGSNVAGLETTATY
IQDTDEFIINTPNTGATKWWIGGAAHSATHTACFARLLVDGKDYGVKIFVVQLRDVSSHS
LMPGIALGDIGKKMGRDAIDNGWIQFTNVRIPRQNMLMKYAKVSSTGKVSQPPLAQLTYG
ALIGGRVTMIADSFFVSQRFITIALRYACVRRQFGTTPGQPETKIIDYPYHQRRLLPLLA
FTYAMKMAADQSQIQYDQTTDLLQTIDPKDKGALGKAIVDLKELFASSAGLKAFTTWTCA
NIIDQCRQACGGHGYSGYNGFGQAYADWVVQCTWEGDNNVLCLSMGRGLIQSCLGHRKGK
PLGSSVGYLANKGLEQATLSGRDLKDPKVLIEAWEKVANGAIQRATDKFVELTKGGLSPD
QAFEELSQQRFQCAKIHTRKHLVTAFYERINASAKADVKPYLINLANLFTLWSIEEDSGL
FLREGFLQPKDIDQVTELVNHYCKEVRDQVAGYTDAFGLSDWFINAPIGNYDGDVYKHYF
AKVNQQNPAQNPRPPYYESTLRPFLFREDEDDDICELDEE*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

YALI0D24750g

YALI0D24750g

Genomic environment map

Computed results

Homologs and Orthologs

Protein YALI0D24750p

Protein domain map

Computed results for YALI0D24750p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes