YALI0D05775g


similar to uniprot|Q08773 Saccharomyces cerevisiae YOR304w ISW2 Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes

Genomic environment map

Element type: CDS
Element length: 3377 nucleotides,
on anti-sense strand of
Yali0D: complement(join(742861..742866,739490..742456)).
Other names:
YALI-IPF40351
Coding sequence: 991 codons.
Database cross references:
EMBL: CR382130
GeneID: 2911039
HOGENOM: Q6CA54

Computed results  

None available yet

Protein YALI0D05775p  


similar to uniprot|Q08773 Saccharomyces cerevisiae YOR304w ISW2 strong similarity to Drosophila ISW1 and human SNF2P homolog

Protein domain map

Protein length: 990 amino acids
Protein family: GL3M4588
Database cross references:
InterPro: IPR000330
InterPro: IPR001005
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
InterPro: IPR015194
InterPro: IPR015195
KEGG: yli:YALI0D05775g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
Pfam: PF09110
Pfam: PF09111
RefSeq: XP_502458.1
SMART: SM00487
SMART: SM00490
SMART: SM00717
UniProtKB/TrEMBL: Q6CA54
UniprotKB: Q6CA54_YARLI

Computed results for YALI0D05775p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

GO:0043044 ATP-dependent chromatin remodeling
GO:0031491 nucleosome binding
GO:0016585 chromatin remodeling complex
GO:0005524 ATP binding
GO:0004386 helicase activity
GO:0003677 DNA binding

Sequence data  


Nucleotide sequence    

>YALI0D05775g.nt
CCGAATCTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTACTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTATTTTATAATTTATTCAACGTATTTATTCCACTCAGTAATAATGATTATT
TTCTGTACTTCGAGATGAGCTACTTAATCATAGACAGTAAGGGTGGATTGATTGGCTCCA
ATAAATTTCCCCAAATTTATAAAAAAGGCCATAAATTTTGCCCCGCCGACATGATCAAAA
CAAGCCCATGTAATCACCCATTTTATTTTTTTCACCGAGTCCTGTCTTCTCGTCTTTGCT
CTATCCAGGCTCAGCGCTACAATTGTCCTACTTGTAGCTACTGCACCATCACTGGTGGTA
ACTTTTTTTAAGGTTGAAACGCAACTTTATTAGCCTCTGAAGATGGCCATAATATGCACT
CTCACTCACCACCGGATGGCGTTCTTAATCTCCTACCCAACCTTTGCTGCTATAGACCCC
GCGGCCAGCAACAGCTCACCACACACGACATGAGCAGCGACACTACGCCCCAGGTGGCGA
CCCCGCGCGACGAGACGGAGGAGGAGCGAATCGAGCGGTACTTCACGCTCCCGGACGCGA
AGAAACATAAAGACGTGAGTAGGACTGGCAGGTGCAAACATCAACATGGGGGTAGTAGGG
TGGTTGTGTGGATGGGGTGATGTGGATGAGGTGGTGTGTGACGTGGCCTTTAGAATCTGA
GGGTGTGTTGGTTTGAGGGGACAGACACTGCTGATCTGTGATGGTGgtaggtggtaggtg
taggtaggtgtggtaggtgcggtagtggctatgatgacttgtgctgtttgcaagaccgtg
ctgtcgatacaacactagccagctgctcatcggaaacacgtggcacaatatcattcctgc
tgtgtgctgcagacccatctttgatgtgatcgttcagtgcactggcttcctcccccatgt
catctacaatattcaacagacagaaacttcagtgcagacagaaacatcaatgaagacaga
agcaacaacggcgcaggcttcctctgggttgcatatcccacggtgatgataccggcgttc
tgacctccctccaatggcacccatatgctacgttatccagttatcatttgttattatctg
tgggtcttcactgactccgtgctaactcagGACACAAACTCGATTAAACGACTCAAATAC
CTCCTCTCTCTGACCGACCTCTTCCGCCACTTCATCAACAAGCGAATGGAAGGTGACCCC
AAGTTCCGCAAGCTTGTCAATGAACTAGATCGAGCCTCCAAGGCCCAGAAGAAAACTAGA
GGTCGAGGGGGACGAGGCCGGCGAAAAACAGAAAAGGAGGAGGACGAGGAGCTGCTCAAC
GACAACACGCAGATGGCCACGGTGTATACCGAGAGTCCCCCGTTCATCAACGGTACACTA
CGAGAGTACCAGGTGCAGGGTCTCAACTGGCTCATTTCGCTGCACGAGAACTCCATCTCC
GGCATTCTGGCTGACGAAATGGGTCTGGGCAAGACGCTGCAGACCATTTCTTTTTTGGGA
TACCTTCGATACAAGTGCGGCATCAACGGGCCTCACATTGTCATTGTACCCAAAAGTACA
CTGGACAACTGGCGCCGAGAGTTTGAGAAGTGGACTCCGGAGGTGAAGACAGTGGTACTG
CGGGGTGACAAGACGGAACGAGCGGAGATCATTGCCAATGAGGTGCTGACGGCAGACTTT
GACGTGGTGATTTCATCGTTTGAAATTGTCATTCGTGAGAAGTCGGCGCTCAAAAAGGTG
GCATGGGAGTACATCATCGTGGACGAGGCGCATCGAATCAAAAACGAAGATTCCATGCTG
TCACAGATTATCCGCCTGTTCCACTCCACCAACCGACTGCTGATCACAGGTACGCCCCTG
CAGAACAACCTGCACGAGTTGTGGGCGTTGCTCAACTTTCTGCTTCCAGATATCTTTTCC
GAAGCCGAAACGTTTGATCAATGGTTTGAGGAGAAGGAGGCCGAGGGGGAGGAGGGCGAA
AACGACGAGGACAGTGTCGTCAAGCAGCTACACAAGGTTCTGCGTCCTTTCTTATTGCGA
CGAGTCAAGAACGACGTTGAGAAATCGCTGCTTCCTAAAAAGGAGCTCAACCTGTACATT
GGTATGTCCGACATGCAGGTGCAGTGGTACCAGAAGCTGTTAGAGAAGGACATTGACGCT
GTGAATGGCCAGCTGGGTAAACGGGAGGGAAAGACGCGGCTGCTCAACATTGTTATGCAA
CTGCGAAAGTGTTGCAACCACCCTTACCTGTTTGAGGGAGCCGAGCCCGGTCCTCCATAC
ACCACCGATGAGCATCTCGTGTTCAACTGCGGTAAGATGGTCATGTTGGATAAGCTGCTG
AAGCGGCTCAAGAGTCAGGGGTCCCGTGTGCTTATTTTCTCACAGATGAGCCGAATGCTT
GACATTCTCGAGGACTACTGCTCGTTCAGAGACTATGAGTACAGCCGGATCGACGGCAGC
ACTGCGCACGAGGACCGTATTGCGGCGATTGACGAGTACAATGCTGAGGGCTCGGAAAAG
TTTGTGTTTCTGCTGACTACCCGAGCTGGTGGTCTGGGAATTAATTTGACCTCTGCCGAC
ATAGTCATTCTGTACGACTCAGACTGGAATCCACAGGCCGATCTGCAGGCCATGGACCGG
GCGCATCGAATCGGCCAGACCAAGCAGGTTTACGTATTCCGGTTTGTGACCGAGAACGCC
GTGGAAGAAAAGGTGCTAGAGCGGGCAGCCCAGAAGTTGCGGCTCGACCAGCTGGTGATT
CAACAGGGTCGAACGCAGCAAAAGGCCGCCGCCAACAACAGTGAGTCCAAGGGCGACCTG
CTGTCCATGATTCGGCATGGTACCGAGGACATTTTCAAGTCGTCCAAGGGAACGCTCAAG
ACGGAGGACGACATTGAGGCAATTCTACTGCATGGCGAAAAGCGAACCAAGCAGCTTAAT
GATAAGTTCGCAGAGCTTGGAATCGACGACCTGCAAAAGTTTTCGACCGATTCGGCCATG
GTGTGGAACGGAGAGGACTTTCAGCACCGAGTTGGAGCCAATGGCATCGGCGCCCCCGAC
CCCAACGGCAAAGGTTGGATTAACCCACCCAAACGAGAGCGGCGGGAGCAGCATTACGGG
GTCAACTCGTACTACAAGGATATCTTTTTGCTTCAGCAGCAGCAACCTCGAACGATGCGG
CCTCCCAAGCAGGTTCCTCTTGCTGAGCACCAGTTCTTTCCCCCAGGCCTGAAAGCTTTA
CAGGATCAGGAACTGGCGTTTTACCGCAAGCAGATCAACTACAAGGTGCCGTATGCGGAC
ATTGATGTTGACGCTTTGGAGGAGGGAGAGACTAAGGAGAGCAAGCGAGCAGCTCTCAAC
AAGGAGATTGCGGACGCGGAGCCGCTGACGGAGGAGCAGGAGGCGCTTAAGCGGGACTAT
GAGAGCGAGGGGTTTACCAACTGGACCAAGCGAGACATGAACAATCTTGTTCATCTGATT
GGTCGGCATGGCCGGGACAACATGGAGGCTGTGGCACGTGCGTTCCGGGGCAAGGGCGAG
GAGGAGGTGTTGCGGTACGCCAAGACGTTCATGGAGCGGCACACGGAGGTCGAGGGGTAC
GAGAAGTACATTGCGGTTATTGAGCAGGGTGAGGAGAAGCTCAAGCGACAGAGGCAGCAG
CAGGAGCTCATCAAAACCAAGCTCAAGGAGTGCAAGGTGCCGATGAACGAGCTTCCTATT
GTCTACCCCGCTAACAACTCCAAGCGGGTGTATTCCGAGGAGGAGGACCGGTTCATTTTG
ATGATGGTCAACAAGTACGGGCTGGAGCATCCCAAGCTGTTTGAGAAGATTCGCAAGGAG
ATCAAAAAATCGCCGCATTTTCGGTTCGACTGGTTCTTTCTGTCGCGCTCCACCTCGGAG
CTTTCTCGACGGTGCACCACGCTCATGTTGACTCTGTCTCGAGAAGTTGAGGGTCCCAGA
ACGATCAAGCGGAAGAGTTTGGGCAAGGGCAAGCTTGATGACGACAAGCGAAGGAGAGAG
AGCGGGACCATGACTCCCGATACCGAGGACAGAGGCACTCCCATGTCTGTTGAGTAGGGA
CTAGCCGCTGGAAGGGACTTATAAATTATACATTATTATCGATGACAGTTGGGCAGATTG
AGGCAGTGCAATGGCCAACGAGCCGCCGAAGTGTCTGTTTCGCTGGCGGTATGACAGTTG
GTGGTAATTCGGAAGGAGTAATGTCTCGTTGGCCACTTGGTGAATGGGATTACTGTACTT
ACAATCACTCCATTAGATCTACTTACGTAATTTCCATTGACCATGGGTCTGGGCTGTGAA
TCCAGGCTCTATGGAGATTCCAGTTTATGTATTATTTCAAGATAGTGATACTTGTAC

Coding sequence    

>YALI0D05775g.cds
ATGGTGGACACAAACTCGATTAAACGACTCAAATACCTCCTCTCTCTGACCGACCTCTTC
CGCCACTTCATCAACAAGCGAATGGAAGGTGACCCCAAGTTCCGCAAGCTTGTCAATGAA
CTAGATCGAGCCTCCAAGGCCCAGAAGAAAACTAGAGGTCGAGGGGGACGAGGCCGGCGA
AAAACAGAAAAGGAGGAGGACGAGGAGCTGCTCAACGACAACACGCAGATGGCCACGGTG
TATACCGAGAGTCCCCCGTTCATCAACGGTACACTACGAGAGTACCAGGTGCAGGGTCTC
AACTGGCTCATTTCGCTGCACGAGAACTCCATCTCCGGCATTCTGGCTGACGAAATGGGT
CTGGGCAAGACGCTGCAGACCATTTCTTTTTTGGGATACCTTCGATACAAGTGCGGCATC
AACGGGCCTCACATTGTCATTGTACCCAAAAGTACACTGGACAACTGGCGCCGAGAGTTT
GAGAAGTGGACTCCGGAGGTGAAGACAGTGGTACTGCGGGGTGACAAGACGGAACGAGCG
GAGATCATTGCCAATGAGGTGCTGACGGCAGACTTTGACGTGGTGATTTCATCGTTTGAA
ATTGTCATTCGTGAGAAGTCGGCGCTCAAAAAGGTGGCATGGGAGTACATCATCGTGGAC
GAGGCGCATCGAATCAAAAACGAAGATTCCATGCTGTCACAGATTATCCGCCTGTTCCAC
TCCACCAACCGACTGCTGATCACAGGTACGCCCCTGCAGAACAACCTGCACGAGTTGTGG
GCGTTGCTCAACTTTCTGCTTCCAGATATCTTTTCCGAAGCCGAAACGTTTGATCAATGG
TTTGAGGAGAAGGAGGCCGAGGGGGAGGAGGGCGAAAACGACGAGGACAGTGTCGTCAAG
CAGCTACACAAGGTTCTGCGTCCTTTCTTATTGCGACGAGTCAAGAACGACGTTGAGAAA
TCGCTGCTTCCTAAAAAGGAGCTCAACCTGTACATTGGTATGTCCGACATGCAGGTGCAG
TGGTACCAGAAGCTGTTAGAGAAGGACATTGACGCTGTGAATGGCCAGCTGGGTAAACGG
GAGGGAAAGACGCGGCTGCTCAACATTGTTATGCAACTGCGAAAGTGTTGCAACCACCCT
TACCTGTTTGAGGGAGCCGAGCCCGGTCCTCCATACACCACCGATGAGCATCTCGTGTTC
AACTGCGGTAAGATGGTCATGTTGGATAAGCTGCTGAAGCGGCTCAAGAGTCAGGGGTCC
CGTGTGCTTATTTTCTCACAGATGAGCCGAATGCTTGACATTCTCGAGGACTACTGCTCG
TTCAGAGACTATGAGTACAGCCGGATCGACGGCAGCACTGCGCACGAGGACCGTATTGCG
GCGATTGACGAGTACAATGCTGAGGGCTCGGAAAAGTTTGTGTTTCTGCTGACTACCCGA
GCTGGTGGTCTGGGAATTAATTTGACCTCTGCCGACATAGTCATTCTGTACGACTCAGAC
TGGAATCCACAGGCCGATCTGCAGGCCATGGACCGGGCGCATCGAATCGGCCAGACCAAG
CAGGTTTACGTATTCCGGTTTGTGACCGAGAACGCCGTGGAAGAAAAGGTGCTAGAGCGG
GCAGCCCAGAAGTTGCGGCTCGACCAGCTGGTGATTCAACAGGGTCGAACGCAGCAAAAG
GCCGCCGCCAACAACAGTGAGTCCAAGGGCGACCTGCTGTCCATGATTCGGCATGGTACC
GAGGACATTTTCAAGTCGTCCAAGGGAACGCTCAAGACGGAGGACGACATTGAGGCAATT
CTACTGCATGGCGAAAAGCGAACCAAGCAGCTTAATGATAAGTTCGCAGAGCTTGGAATC
GACGACCTGCAAAAGTTTTCGACCGATTCGGCCATGGTGTGGAACGGAGAGGACTTTCAG
CACCGAGTTGGAGCCAATGGCATCGGCGCCCCCGACCCCAACGGCAAAGGTTGGATTAAC
CCACCCAAACGAGAGCGGCGGGAGCAGCATTACGGGGTCAACTCGTACTACAAGGATATC
TTTTTGCTTCAGCAGCAGCAACCTCGAACGATGCGGCCTCCCAAGCAGGTTCCTCTTGCT
GAGCACCAGTTCTTTCCCCCAGGCCTGAAAGCTTTACAGGATCAGGAACTGGCGTTTTAC
CGCAAGCAGATCAACTACAAGGTGCCGTATGCGGACATTGATGTTGACGCTTTGGAGGAG
GGAGAGACTAAGGAGAGCAAGCGAGCAGCTCTCAACAAGGAGATTGCGGACGCGGAGCCG
CTGACGGAGGAGCAGGAGGCGCTTAAGCGGGACTATGAGAGCGAGGGGTTTACCAACTGG
ACCAAGCGAGACATGAACAATCTTGTTCATCTGATTGGTCGGCATGGCCGGGACAACATG
GAGGCTGTGGCACGTGCGTTCCGGGGCAAGGGCGAGGAGGAGGTGTTGCGGTACGCCAAG
ACGTTCATGGAGCGGCACACGGAGGTCGAGGGGTACGAGAAGTACATTGCGGTTATTGAG
CAGGGTGAGGAGAAGCTCAAGCGACAGAGGCAGCAGCAGGAGCTCATCAAAACCAAGCTC
AAGGAGTGCAAGGTGCCGATGAACGAGCTTCCTATTGTCTACCCCGCTAACAACTCCAAG
CGGGTGTATTCCGAGGAGGAGGACCGGTTCATTTTGATGATGGTCAACAAGTACGGGCTG
GAGCATCCCAAGCTGTTTGAGAAGATTCGCAAGGAGATCAAAAAATCGCCGCATTTTCGG
TTCGACTGGTTCTTTCTGTCGCGCTCCACCTCGGAGCTTTCTCGACGGTGCACCACGCTC
ATGTTGACTCTGTCTCGAGAAGTTGAGGGTCCCAGAACGATCAAGCGGAAGAGTTTGGGC
AAGGGCAAGCTTGATGACGACAAGCGAAGGAGAGAGAGCGGGACCATGACTCCCGATACC
GAGGACAGAGGCACTCCCATGTCTGTTGAGTAG

Predicted translation product    

>YALI0D05775g.aa
MVDTNSIKRLKYLLSLTDLFRHFINKRMEGDPKFRKLVNELDRASKAQKKTRGRGGRGRR
KTEKEEDEELLNDNTQMATVYTESPPFINGTLREYQVQGLNWLISLHENSISGILADEMG
LGKTLQTISFLGYLRYKCGINGPHIVIVPKSTLDNWRREFEKWTPEVKTVVLRGDKTERA
EIIANEVLTADFDVVISSFEIVIREKSALKKVAWEYIIVDEAHRIKNEDSMLSQIIRLFH
STNRLLITGTPLQNNLHELWALLNFLLPDIFSEAETFDQWFEEKEAEGEEGENDEDSVVK
QLHKVLRPFLLRRVKNDVEKSLLPKKELNLYIGMSDMQVQWYQKLLEKDIDAVNGQLGKR
EGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLVFNCGKMVMLDKLLKRLKSQGS
RVLIFSQMSRMLDILEDYCSFRDYEYSRIDGSTAHEDRIAAIDEYNAEGSEKFVFLLTTR
AGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQTKQVYVFRFVTENAVEEKVLER
AAQKLRLDQLVIQQGRTQQKAAANNSESKGDLLSMIRHGTEDIFKSSKGTLKTEDDIEAI
LLHGEKRTKQLNDKFAELGIDDLQKFSTDSAMVWNGEDFQHRVGANGIGAPDPNGKGWIN
PPKRERREQHYGVNSYYKDIFLLQQQQPRTMRPPKQVPLAEHQFFPPGLKALQDQELAFY
RKQINYKVPYADIDVDALEEGETKESKRAALNKEIADAEPLTEEQEALKRDYESEGFTNW
TKRDMNNLVHLIGRHGRDNMEAVARAFRGKGEEEVLRYAKTFMERHTEVEGYEKYIAVIE
QGEEKLKRQRQQQELIKTKLKECKVPMNELPIVYPANNSKRVYSEEEDRFILMMVNKYGL
EHPKLFEKIRKEIKKSPHFRFDWFFLSRSTSELSRRCTTLMLTLSREVEGPRTIKRKSLG
KGKLDDDKRRRESGTMTPDTEDRGTPMSVE*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites