YALI0D04268g


similar to uniprot|P00431 Saccharomyces cerevisiae YKR066c CCP1 Mitochondrial cytochrome-c peroxidase

Genomic environment map

Element type: CDS
Element length: 858 nucleotides,
on anti-sense strand of
Yali0D: complement(533256..534113).
Other names:
YALI-CDS4546.1
YALI-IPF4751
Coding sequence: 286 codons.
Database cross references:
EMBL: CR382130
GeneID: 2910632
HOGENOM: Q6CAB5

Computed results  

None available yet

Homologs and Orthologs

Homologs in protein families: GL3C0873 GL3C0873.N3
Orthologs: strict determination not possible; homologs must be refined manually

Protein YALI0D04268p  


similar to uniprot|P00431 Saccharomyces cerevisiae YKR066c CCP1 cytochrome-c peroxidase precursor

Protein domain map

Protein length: 285 amino acids
Protein family: GL3C0873
Database cross references:
InterPro: IPR002016
InterPro: IPR002207
KEGG: yli:YALI0D04268g
PRINTS: PR00458
PRINTS: PR00459
PROSITE: PS00435
PROSITE: PS00436
PROSITE: PS50873
PeroxiBase: 2542
Pfam: PF00141
RefSeq: XP_502397.1
UniProtKB/Swiss-Prot: Q6CAB5
UniprotKB: CCPR2_YARLI

Computed results for YALI0D04268p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

GO:0005759 mitochondrial matrix

Sequence data  


Nucleotide sequence    

>YALI0D04268g.nt
AAATGGACCTTGGGTCTCGAACTCGTCTTGAAACCCTTGCTCATCCCCTTCTTACCTCTT
CGCCCACATTCTGCACAAAGTTCTGCCGGGATCTTCCGAGCGAGATTGGAGGCAATTGAG
AGGGATGGCAGGATAGAGATGTAATTAGTGGGTCAGTCAAAGAGTACGAGAATCATGGAA
CTAGAGCTAGGGATCCACATTAAAATATTCAACTGCACGCCTTCTGTTTGTGGGCTTGAT
TCTCCCCTCACCCCCCGCACGTGTGTGGAGTAATGGCGCCATCATATTTCCTATTTCCGT
GTCTCTCTGTTCTTTATTTTTCCAACGGTGCAAGCCAAAAAAAAGTTCGCCACCGTTCCT
GCGTGGCGTGATAGAACCGAGGATATGCAGACATCTTGTGCCGAACGTGGGGGTATTGGA
ATTGCAGTAATGTACTGTACGTCGAATGGTGCAAGTGTCAGCTGAGGGTGCGGAATTGGA
GTAGAGGAGATCACGGAACCAGCGTCATTGAGGGCAATCATGGCTAAGACTGCTGGTTTC
CTGAACCCACGAAAATGATGTACCATCTTCTCAGCACTTCCATTTACCTCTTCTCTCTCC
CCAGAAAAGCCAACCAGTCAGCTGACAGATATAGTAAGAGGCGCTGAATTTGGAAGCAGG
GTAAGGGGTTGCTGCGTGTTGCGAAAACCCGGGGAAGCTGGAGACACTAGAGGCTATAGA
GGCAAGGGTGACATGTGGGGAATGTACTAGGGCGTAATTCGGGTATGTGAGGTGGTGAGA
ATCTATTCCCGCCACTGCGTGTGCAATCCGAGTTCTCGAAGGCCCGATATAACCACACCC
CTTCCGCCTCCCCTCATATTCACATTCGAAACCTTGAGCCTCGGCTTCAGCGCAACCGAT
GAAGATACTCTAATTTGGAAAGCTTAGTGGGAGTCCTGCAGGGCGTATATAACCTCTGGT
CTCCCTACAGAGGTGGTCATCATTATCCACACTATACACAATGGCTGAGGGAGACTACAA
CGCAGTTCGAGAGGCTATTGCTGACATTCTCGACAACGACGACTACGACGACGGATCCAT
TGGACCCGTGCTTGTCCGACTAGCATGGCACGCGTCGGGCACCTACGACAAGGCCACTGG
AACCGGAGGCTCCAACGGTGCCACCATGCGATACATGAAGGAGGCCAAGGACGAGGCCAA
CAACGGTCTGGAGAACGCCCGACAGTTCCTCGAGCCCATCAAGGCCAAGTTCCCCTGGAT
CACCTACGCCGATCTGTGGACTCTGGCTGGCGTTGTGGCTATCGAGGAGATGGACGGCCC
CAAGGTCCCCTGGAAGCCCGGCCGACAGGACTACGTCGACGAGACCAACGTTCCCCCTAA
CGGACGACTCCCCGACGGAGCCCAGGGCCAGGACCACCTTCGAGACATCTTCTACCGAAT
GGGTTTCAACGACCAGGAGATTGTGGCTCTCTGCGGCGCACACAACATGGGCCGATGCCA
CATGGACCGATCCGGTTTTGAGGGCGCCTGGGTGCCCAACCCCATCCGATTCGCCAACAC
CTACTTCAAGCTGCTGATGAACGAGGAGTGGAAGCTCACCACTCTCAAGAACGGCGTCAA
GCAGTACTTTAACGAGGACGAGGAGCTCATGATGCTGCCCGCCGACTACTCGCTCATGCA
GGACCCCGAGTTCCACAAGTGGGTTGAGATCTACGCCGCCGACAAGGAAAAGTTCTTTGA
GGACTTCTCCAAGGTCTTCGCCAAGCTCATTGAGCTCGGTGTTCGACGAGGTCCCGACGG
CAAGGCCAAGACCAACTTCATTGATCGAAACAACAACGATCCTAACCCTCGACTTTAGAT
GTCGGGTGTGAGGTTGACGCAAAAGAGGAGTGTCTTGTAAGTATTATTTATGCATAACTG
AATTTAGTTGATTTGTACATGTTTCTGTATGATGTTTTTGTATATATGTTCATTTGGTGG
GCCGCATGTGTATATGATATGATTATCAAGGAGTTAGGGAAGCTAATGAGAGGCTACAAA
AAGGCTAGCTAGCAAACTCCAATAAAGACAGCTTGTTTGTTGGCGTCATTGTTGTTCTCC
TGGATGTAGTTTTATATTCACCTGCATGGCATACATCACTTGTCCTCCTGGTTGCCAC

Coding sequence    

>YALI0D04268g.cds
ATGGCTGAGGGAGACTACAACGCAGTTCGAGAGGCTATTGCTGACATTCTCGACAACGAC
GACTACGACGACGGATCCATTGGACCCGTGCTTGTCCGACTAGCATGGCACGCGTCGGGC
ACCTACGACAAGGCCACTGGAACCGGAGGCTCCAACGGTGCCACCATGCGATACATGAAG
GAGGCCAAGGACGAGGCCAACAACGGTCTGGAGAACGCCCGACAGTTCCTCGAGCCCATC
AAGGCCAAGTTCCCCTGGATCACCTACGCCGATCTGTGGACTCTGGCTGGCGTTGTGGCT
ATCGAGGAGATGGACGGCCCCAAGGTCCCCTGGAAGCCCGGCCGACAGGACTACGTCGAC
GAGACCAACGTTCCCCCTAACGGACGACTCCCCGACGGAGCCCAGGGCCAGGACCACCTT
CGAGACATCTTCTACCGAATGGGTTTCAACGACCAGGAGATTGTGGCTCTCTGCGGCGCA
CACAACATGGGCCGATGCCACATGGACCGATCCGGTTTTGAGGGCGCCTGGGTGCCCAAC
CCCATCCGATTCGCCAACACCTACTTCAAGCTGCTGATGAACGAGGAGTGGAAGCTCACC
ACTCTCAAGAACGGCGTCAAGCAGTACTTTAACGAGGACGAGGAGCTCATGATGCTGCCC
GCCGACTACTCGCTCATGCAGGACCCCGAGTTCCACAAGTGGGTTGAGATCTACGCCGCC
GACAAGGAAAAGTTCTTTGAGGACTTCTCCAAGGTCTTCGCCAAGCTCATTGAGCTCGGT
GTTCGACGAGGTCCCGACGGCAAGGCCAAGACCAACTTCATTGATCGAAACAACAACGAT
CCTAACCCTCGACTTTAG

Predicted translation product    

>YALI0D04268g.aa
MAEGDYNAVREAIADILDNDDYDDGSIGPVLVRLAWHASGTYDKATGTGGSNGATMRYMK
EAKDEANNGLENARQFLEPIKAKFPWITYADLWTLAGVVAIEEMDGPKVPWKPGRQDYVD
ETNVPPNGRLPDGAQGQDHLRDIFYRMGFNDQEIVALCGAHNMGRCHMDRSGFEGAWVPN
PIRFANTYFKLLMNEEWKLTTLKNGVKQYFNEDEELMMLPADYSLMQDPEFHKWVEIYAA
DKEKFFEDFSKVFAKLIELGVRRGPDGKAKTNFIDRNNNDPNPRL*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites