YALI0C23859g

uniprot|O74938 Yarrowia lipolytica YALI0C23859g POX5 Acyl-CoA oxidase 5 (EC 1.3.3.6), peroxisomal

Genomic environment map

Element type: CDS
Element length: 2100 nucleotides,
on anti-sense strand of
Yali0C: complement(3195532..3197631).
Other names:
YALI-CDS1168.1
YALI-IPF7181
Coding sequence: 700 codons.

Database cross references:
EMBL: AJ001303
EMBL: CR382129
GeneID: 2909505
HOGENOM: O74938

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0456
Consensus family of 16 members, scrltkgdy (1 1 1 1 1 1 1 3 6)
16-member family, phyletic pattern sczltkgdy, profile (1 1 1 1 1 1 1 3 6)
Proteins: SACE0G01364p CAGL0A03740p ZYRO0E08338p SAKL0F02068p KLTH0G01914p KLLA0F09933p ERGO0E16500p DEHA2C01078p DEHA2D17204p DEHA2D17248p YALI0C23859p YALI0D24750p YALI0E06567p YALI0E27654p YALI0E32835p YALI0F10857p
Search in: Génolevures Google

Génolevures family GL3C0456.N2
Nine-SONS subgroup of a Consensus family
1-member family, phyletic pattern --------y, profile (0 0 0 0 0 0 0 0 1)
Protein: YALI0C23859p
Search in: Génolevures Google

Homologs in protein families: GL3C0456 GL3C0456.N2
Orthologs: strict determination not possible; homologs must be refined manually

Protein YALI0C23859p

uniprot|O74938 Yarrowia lipolytica POX5 Acyl-CoA oxidase 5 (EC 1.3.3.6), peroxisomal

Protein domain map

Protein length: 699 amino acids
Protein family: GL3C0456

Database cross references:
Gene3D: G3DSA:1.10.540.10
Gene3D: G3DSA:1.20.140.10
Gene3D: G3DSA:2.40.110.10
HSSP: P07872
InterPro: IPR002655
InterPro: IPR006090
InterPro: IPR006091
InterPro: IPR012258
InterPro: IPR013764
InterPro: IPR013786
KEGG: yli:YALI0C23859g
PANTHER: PTHR10909:SF11
PIRSF: PIRSF000168
Pfam: PF00441
Pfam: PF01756
Pfam: PF02770
RefSeq: XP_502199.1
UniProtKB/TrEMBL: O74938
UniprotKB: O74938_YARLI

Computed results for YALI0C23859p

Blastp Genolevures

Blastp Uniprot

Gene Ontology terms

GO:0055114	oxidation reduction
GO:0050660	FAD binding
GO:0009055	electron carrier activity
GO:0006635	fatty acid beta-oxidation
GO:0005777	peroxisome
GO:0003997	acyl-CoA oxidase activity
GO:0003995	acyl-CoA dehydrogenase activity

Sequence data

>YALI0C23859g.nt
CAACGGTTTCAAAAACCAGGCCATGGCCTGGAGTGCCGAAACCATGTTGGTCTGGGGAAA
TGGAGATTTCCAAGGGGATTCTCCGGGTTATTTGATTGTGATTGTGATTGTGATTGGTGG
GTAGTTCGATTGAGATGTTTGGCATTGAAACGACAAATTCAGAGCTCCAGTATGTCGTAC
TAGTAGCCCCGGGCTGATATCGATCCGCGTAAATTCAGAGCAATGCCAAGATCCTTATTT
CCGATAACAGCGAGATACACATCAGAAGAGGTGGAGACTCTGGCCCCGCACGACCACCAC
GTCGTCACTCAAAGCAAAGTCACGATGTAGAAATCACAATCGTCCCCATAAGCACGTGGA
TTCCCCTGGTTTTGTTTCGGCCTCGGCAGTGGCAATTCTGGGGTATATAAACCAGCAAGG
TTATGACCTGATTGACCTGCTTGTGGCCTGATAAACCGCCTGACTTTTGTGATAAGGTTG
GGAGCATGCGGCTCGGGCCATTGTGAGCATTTTCGTCAAGGACTGGCCAAGTCCAACTGG
AAGAGACATGGGCAAAATGTCGACTTTACAGATGTACCCGAAATTGCTTCAATTGGTCTC
AGCTGCCGGAACCGGATCTATCGGTGCAAGTATCGTACAGTAGACATGTGCTATTGGTAA
CCCTCGGTATTGGCTAGGTTTCGTATCAGGGATACAGTTCAACGCTGATCGCATATGGCA
TGATTCCGGCTCGACACAGCGACCAAGAACCAAGCGTGTATGTCGTAGACTTGCAAATCA
TGTGGGGCTTATCCCCGGATTTCCCCAAGTCACGTTTTCACAAAGGCTGTCTCCCGAATG
CATGAGCCGAGGCAGGCTAAACTGGTTTGTTCATGTACCCCACACAACGTAAAGATGCAC
CCCATGTGCAGTGAAATACCACAAGTATATATATACCGACCTACCCGAGATAGCAAATTG
ATTCTACACTTACACTACCAATTCTTACATCAAACCAAACATGAACAACAACCCCACCAA
CGTGATCCTTGGAGGCAAGGAGTACGACACCTTCACCGAGCCTCCGGCCCAGATGGAGCT
GGAGCGAGCCAAGACACAATTCAAGGTCCGAGACGTGACCAACTTCCTCACAGGCAGCGA
GCAGGAGACACTGCTGACCGAGCGAATCATGCGGGAGATTGAGCGAGATCCCGTTCTCAA
CGTCGCCGGCGACTACGACGCCGATCTTCCCACCAAGCGACGACAAGCTGTTGAGCGAAT
CGGGGCTCTGGCCCGATACCTGCCCAAGGATTCCGAGAAGGAGGCCATTTTGCGAGGCCA
GCTGCATGGTATTGTGGACATGGGTACCCGAACCCGAATCGCCGTTCACTACGGTCTGTT
TATGGGCGCCATTCGTGGCTCAGGAACCAAGGAGCAGTACGATTACTGGGTCGCCAAGGG
CGCCGCTACTCTGCACAAATTCTATGGCTGCTTTGCCATGACTGAGCTGGGTCACGGATC
TAACGTGGCCGGTCTCGAGACCACCGCCACCCTTGATAAGGACACCGACGAGTTCATCAT
CAACACCCCCAACTCGGGAGCCACAAAGTGGTGGATTGGAGGAGCTGCCCACTCTGCTAC
CCACACGGCTTGTCTTGCCCGACTCATTGTTGATGGCAAGGACTATGGTGTTAAGATCTT
CATTGTTCAGCTGCGAGACCTCAACTCCCACTCTCTACTCAACGGTATTGCCATTGGAGA
TATCGGCAAGAAGATGGGCCGAGATGCCATTGATAATGGTTGGATCCAGTTCACAGACGT
CCGAATTCCCCGACAGAACATGCTCATGCGATACGACCGGGTGTCTCGAGACGGCGAGGT
TACCACCTCCGAGCTTGCCCAGCTCACCTACGGAGCACTTCTGTCTGGCCGAGTGACCAT
GATTGCCGAGTCTCACCTCCTGTCTGCTCGGTTCCTCACCATTGCTCTTCGGTACGCCTG
TATCCGTCGACAGTTCGGAGCTGTGCCTGACAAGCCCGAGACTAAGCTCATCGACTACCC
CTACCACCAACGACGTCTGCTGCCTCTTCTGGCCTACACCTACGCCATGAAGATGGGCGC
CGACGAGGCCCAGCAGCAGTACAACTCCTCCTTTGGCGCTCTTCTCAAGCTCAACCCCGT
CAAGGACGCTGAGAAGTTTGCTGTCGCCACTGCCGACCTCAAGGCTCTGTTTGCCTCTTC
TGCCGGAATGAAGGCCTTCACCACCTGGGCTGCCGCCAAGATCATTGACGAGTGCCGACA
GGCCTGTGGTGGCCATGGCTACTCCGGCTACAACGGTTTCGGTCAGGCTTACGCCGACTG
GGTCGTCCAATGCACTTGGGAGGGTGACAACAACGTGCTGTGTCTGTCCATGGGTCGATC
GCTCATCCAGTCGTGCATTGCCATGAGAAAGAAGAAGGGCCATGTCGGCAAGTCGGTCGA
GTACCTGCAGCGACGAGACGAGCTGCAGAATGCCCGAGTTGACAACAAGCCTCTCACTGA
CCCTGCTGTGCTCATCACTGCATGGGAGAAGGTTGCCTGCGAGGCCATCAACAGAGCCAC
TGACTCCTTCATCAAGCTCACCCAGGAGGGTCTGTCTCCTGACCAGGCCTTTGAGGAGCT
GTCTCAACAGAGATTTGAGTGTGCGCGAATCCACACCCGAAAGCATCTGATCACCTCGTT
CTACGCTCGAATCTCCAAGGCCAAGGCCCGAGTCAAGCCCCACCTTACTGTTCTTGCCAA
CCTCTTTGCCGTCTGGTCCATCGAGGAGGACTCTGGTCTCTTCCTTCGGGAGGGCTGCTT
CGAGCCTGCCGAGATGGACGAGATCACCGCTCTGGTCGACGAGCTGTGCTGCGAGGCTCG
AGAGCAGGTCATTGGATTCACCGACGCCTTCAACCTGTCCGACTTCTTCATTAACGCCCC
CATTGGCCGATTCGACGGAGACGCCTACAAGCACTACATGGACGAGGTCAAGGCTGCCAA
CAACCCTCGTAACACCCATGCTCCTTACTACGAGACCAAGCTGCGACCCTTCCTGTTCCG
ACCCGATGAGGACGAGGAGATTTGCGACCTGGACGAGTAGGTTGTTGTAATACTATGATT
TATTGTGTTTATATGTTATTGATACTATTGAAAGAGTTATTGTGTAATTTTAGATGCTGT
ATGTTAACTAGAAGCTCAGATTCTACAAAGAGATCCTCAGATCTGAGGAATGATCTACGT
TCTGCAATAGAAGGGACAACTGCAGGTCTGAATGACCACAAAAAGAATACACCACAAGCA
GTTGTAACTGAGCTATTAGCCTTGCTTTCGCACCATTCGCTTTTCTGGATGGTAGCCCTT
TACTACAAGTAGCTAATATGGAATGTACATTACGGTCTCA

>YALI0C23859g.cds
ATGAACAACAACCCCACCAACGTGATCCTTGGAGGCAAGGAGTACGACACCTTCACCGAG
CCTCCGGCCCAGATGGAGCTGGAGCGAGCCAAGACACAATTCAAGGTCCGAGACGTGACC
AACTTCCTCACAGGCAGCGAGCAGGAGACACTGCTGACCGAGCGAATCATGCGGGAGATT
GAGCGAGATCCCGTTCTCAACGTCGCCGGCGACTACGACGCCGATCTTCCCACCAAGCGA
CGACAAGCTGTTGAGCGAATCGGGGCTCTGGCCCGATACCTGCCCAAGGATTCCGAGAAG
GAGGCCATTTTGCGAGGCCAGCTGCATGGTATTGTGGACATGGGTACCCGAACCCGAATC
GCCGTTCACTACGGTCTGTTTATGGGCGCCATTCGTGGCTCAGGAACCAAGGAGCAGTAC
GATTACTGGGTCGCCAAGGGCGCCGCTACTCTGCACAAATTCTATGGCTGCTTTGCCATG
ACTGAGCTGGGTCACGGATCTAACGTGGCCGGTCTCGAGACCACCGCCACCCTTGATAAG
GACACCGACGAGTTCATCATCAACACCCCCAACTCGGGAGCCACAAAGTGGTGGATTGGA
GGAGCTGCCCACTCTGCTACCCACACGGCTTGTCTTGCCCGACTCATTGTTGATGGCAAG
GACTATGGTGTTAAGATCTTCATTGTTCAGCTGCGAGACCTCAACTCCCACTCTCTACTC
AACGGTATTGCCATTGGAGATATCGGCAAGAAGATGGGCCGAGATGCCATTGATAATGGT
TGGATCCAGTTCACAGACGTCCGAATTCCCCGACAGAACATGCTCATGCGATACGACCGG
GTGTCTCGAGACGGCGAGGTTACCACCTCCGAGCTTGCCCAGCTCACCTACGGAGCACTT
CTGTCTGGCCGAGTGACCATGATTGCCGAGTCTCACCTCCTGTCTGCTCGGTTCCTCACC
ATTGCTCTTCGGTACGCCTGTATCCGTCGACAGTTCGGAGCTGTGCCTGACAAGCCCGAG
ACTAAGCTCATCGACTACCCCTACCACCAACGACGTCTGCTGCCTCTTCTGGCCTACACC
TACGCCATGAAGATGGGCGCCGACGAGGCCCAGCAGCAGTACAACTCCTCCTTTGGCGCT
CTTCTCAAGCTCAACCCCGTCAAGGACGCTGAGAAGTTTGCTGTCGCCACTGCCGACCTC
AAGGCTCTGTTTGCCTCTTCTGCCGGAATGAAGGCCTTCACCACCTGGGCTGCCGCCAAG
ATCATTGACGAGTGCCGACAGGCCTGTGGTGGCCATGGCTACTCCGGCTACAACGGTTTC
GGTCAGGCTTACGCCGACTGGGTCGTCCAATGCACTTGGGAGGGTGACAACAACGTGCTG
TGTCTGTCCATGGGTCGATCGCTCATCCAGTCGTGCATTGCCATGAGAAAGAAGAAGGGC
CATGTCGGCAAGTCGGTCGAGTACCTGCAGCGACGAGACGAGCTGCAGAATGCCCGAGTT
GACAACAAGCCTCTCACTGACCCTGCTGTGCTCATCACTGCATGGGAGAAGGTTGCCTGC
GAGGCCATCAACAGAGCCACTGACTCCTTCATCAAGCTCACCCAGGAGGGTCTGTCTCCT
GACCAGGCCTTTGAGGAGCTGTCTCAACAGAGATTTGAGTGTGCGCGAATCCACACCCGA
AAGCATCTGATCACCTCGTTCTACGCTCGAATCTCCAAGGCCAAGGCCCGAGTCAAGCCC
CACCTTACTGTTCTTGCCAACCTCTTTGCCGTCTGGTCCATCGAGGAGGACTCTGGTCTC
TTCCTTCGGGAGGGCTGCTTCGAGCCTGCCGAGATGGACGAGATCACCGCTCTGGTCGAC
GAGCTGTGCTGCGAGGCTCGAGAGCAGGTCATTGGATTCACCGACGCCTTCAACCTGTCC
GACTTCTTCATTAACGCCCCCATTGGCCGATTCGACGGAGACGCCTACAAGCACTACATG
GACGAGGTCAAGGCTGCCAACAACCCTCGTAACACCCATGCTCCTTACTACGAGACCAAG
CTGCGACCCTTCCTGTTCCGACCCGATGAGGACGAGGAGATTTGCGACCTGGACGAGTAG

>YALI0C23859g.aa
MNNNPTNVILGGKEYDTFTEPPAQMELERAKTQFKVRDVTNFLTGSEQETLLTERIMREI
ERDPVLNVAGDYDADLPTKRRQAVERIGALARYLPKDSEKEAILRGQLHGIVDMGTRTRI
AVHYGLFMGAIRGSGTKEQYDYWVAKGAATLHKFYGCFAMTELGHGSNVAGLETTATLDK
DTDEFIINTPNSGATKWWIGGAAHSATHTACLARLIVDGKDYGVKIFIVQLRDLNSHSLL
NGIAIGDIGKKMGRDAIDNGWIQFTDVRIPRQNMLMRYDRVSRDGEVTTSELAQLTYGAL
LSGRVTMIAESHLLSARFLTIALRYACIRRQFGAVPDKPETKLIDYPYHQRRLLPLLAYT
YAMKMGADEAQQQYNSSFGALLKLNPVKDAEKFAVATADLKALFASSAGMKAFTTWAAAK
IIDECRQACGGHGYSGYNGFGQAYADWVVQCTWEGDNNVLCLSMGRSLIQSCIAMRKKKG
HVGKSVEYLQRRDELQNARVDNKPLTDPAVLITAWEKVACEAINRATDSFIKLTQEGLSP
DQAFEELSQQRFECARIHTRKHLITSFYARISKAKARVKPHLTVLANLFAVWSIEEDSGL
FLREGCFEPAEMDEITALVDELCCEAREQVIGFTDAFNLSDFFINAPIGRFDGDAYKHYM
DEVKAANNPRNTHAPYYETKLRPFLFRPDEDEEICDLDE*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

YALI0C23859g

YALI0C23859g

Genomic environment map

Computed results

Homologs and Orthologs

Protein YALI0C23859p

Protein domain map

Computed results for YALI0C23859p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes