YALI0C19624g

similar to uniprot|P38071 Saccharomyces cerevisiae YBR026c ETR1 2-enoyl thioester reductase, member of the medium chain dehydrogenase/reductase family

Genomic environment map

Element type: CDS
Element length: 1131 nucleotides,
on anti-sense strand of
Yali0C: complement(2662343..2663473).
Other names:
YALI-CDS3506.1
YALI-IPF6790
Coding sequence: 377 codons.

Database cross references:
EMBL: CR382129
GeneID: 2909944
HOGENOM: Q6CBE4

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0928
Consensus family of 10 members, scrltkgdy (1 1 1 1 1 1 1 2 1)
10-member family, phyletic pattern sczltkgdy, profile (1 1 1 1 1 1 1 2 1)
Proteins: SACE0B03124p CAGL0B04323p ZYRO0A03916p SAKL0C08910p KLTH0C09020p KLLA0F24552p ERGO0E06380p DEHA2C05808p DEHA2F10362p YALI0C19624p
Search in: Génolevures Google

Génolevures family GL3C0928.N1
Nine-SONS subgroup of a Consensus family
1-member family, phyletic pattern --------y, profile (0 0 0 0 0 0 0 0 1)
Protein: YALI0C19624p
Search in: Génolevures Google

Homologs in protein families: GL3C0928 GL3C0928.N1
Orthologs: strict determination not possible; homologs must be refined manually

Protein YALI0C19624p

similar to uniprot|P38071 Saccharomyces cerevisiae YBR026c (MRF1) mitochondrial respiratory function protein

Protein domain map

Protein length: 376 amino acids
Protein family: GL3C0928

Database cross references:
Gene3D: G3DSA:3.40.50.720
InterPro: IPR002085
InterPro: IPR013149
InterPro: IPR013154
InterPro: IPR016040
KEGG: yli:YALI0C19624g
PANTHER: PTHR11695
Pfam: PF00107
Pfam: PF08240
RefSeq: XP_502018.1
UniProtKB/Swiss-Prot: Q6CBE4
UniprotKB: ETR1_YARLI

Computed results for YALI0C19624p

Blastp Genolevures

Blastp Uniprot

Gene Ontology terms

None available yet

Sequence data

Nucleotide sequence

>YALI0C19624g.nt
GACTTCCGTCAAGAGGAGATTATGTTTGGCAACTGCGTTCAGAGGTCAATACCGAGTCAA
CAGTTAACTACAGTATATACTACACAATTAACCCAATTGCTCAATATCCAAAAAACCAAC
CTCTTCTCTGAATACTTACCCGAACACCACTCACTGCGCTAGCCTCCTCCTCGAGGAAAG
TTACACTACTGTCTCCCCTTGTAAACCCATTGTCTCGGGTAGCGAATACGAGCGCTGCAG
CAATAATGTTTCAGAACCGGTCAAACACGCCACTCTACTTATAGATCTAAGGGGTCTTCG
ATACAAGGCGTAGTTGCAGTCGGCACAGGGTTCACTTGGGAACTTTTCAACGGGGTCTTG
CTCAGTTTATAACGTTATATCAGCACATATCAGCTGATGATTTGATTGACTCACTAGCAC
AGCTCCTTGAGACAAAGAGCAGCTCATCGTCTCAAATTGCCAGTGCATTACTGTACCTTT
GCTTACATAACCAGCTGATTTTTTCACCCAAAGATTCAGTCTAAAAATAGAGTTCCGGCT
TTGCTCCGAACGTTGACATTTGGTGATGTTGCGAATGGAGAGATATGGATTGGTATATAG
AATAAAGTCGAAAAAAATGGCAGAAATTGCGACCAGTAATTTATTTGTCTATTTGGCCTG
TTCAGGTGCTCATTTCTTCTTCTGAGAAACGACAAAACCACCTGGCTGCTCACTCCACAA
TTCTGCATGTACCCCAACCATTATATTGAGAACCTTATGGGTCAGGCGGTCAGTTAAAAA
GGGTAAAAAAAGGAGTTATTTTGGCGGGAAAAACAAACAAATCAATTTATGACGAAATTT
ACAACAAAATGGTTTATTCAGAAATTCATCTTCGATTCTATACCCCATTATACACTCGTC
TTCATCTTTCATCACTCATTTGGAAAAGGGTAACTCAATCTCTTATCCACTTTTAAATTT
CCGCAACGAGCAAGCTGGTTACAACTTCTACTCAAACGACATGCTACGAACACTTCGAAC
CTCTCAATTGGCACGATCCGGCTTTGGAACGCCCTCTTTTGGTCTGCGATTTAACTCCGT
TGGCCGGGCGTTTGTCTTCTCCCAAACTGGCGAGCCCAAGGACGTGATCCAGGTGCTGGA
GTATCCCATTGAGAAGCCTCTGGAGAACCAGGTGCTGCTTAAGTCGCTCGGATTCACTAT
CAACCCGGCTGACATTAACCAATTGGAGGGCGTTTATCCCTCTGTGCCTCCCAAATCCGT
CCAGATCAACAACGAAGACGCTGCTATTGGAGGCAACGAGGGTCTGTTCCAGGTGCTTGA
TCCCGGTGCCAAGTCTGGACTGAAGAAGGGCGACTGGGTTCTTCCTCGAAAGACATGCTT
TGGAACCTGGCGATCACATGCTCTGGTGGAGGCTGACACCGTTGTGAAGATTGACAACAC
TGATCTCACCAAGGTGCAGGCTACCACTGTGTCTGTTAACCCCTCTACTGCTTACGAGAT
GCTCAAGGACCTCAAGGAGGGCGACTGGTTCATTCAGAACGGTGGTAACAGCGGTGTTGG
GCGAGCAGCTATTCAGATTGGCCACATCCGAGGTCTCAAGAGCATCTCTGTGGTCAGAGA
TCGTCCTGATCTCGAAGTGCTCAAGAAGGAACTCACCGATCTGGGCGCCACCCACGTAAT
CACTGAGGAGGAGGCCTCGGATAAGTTGTTTTCCAAGCAGATCAAGTCCTGGACCGGCGG
AAAGATTAAGCTGGCTCTCAACTGTATTGGAGGAAAGAGCGCCACTTCCATCATGCGACA
GCTGGGAGCCGGAGGATCCATTGTCACTTACGGAGGCATGTCTAAGAAGCCTCTTACGTT
CCCCACTGGCCCTTTTATCTTCAAGGACATCACTGCCAAGGGCTACTGGCTGACTCGATG
GGCCGATAAGCACCCTGAAGAGAAGGCTAAGACCATTGAGAACATCTTCAAGTTCTACCG
AGAAAAGAAGTTTGTGGCTCCTCCCGTTAACATTTCGACTCTGGACTTCAGCAAGGGTAA
CGACGTTGTTCTGTCCGAGTTTTTGGACGCCCTTGGAAAGGCTCAGAAGGGCGGAGGTAA
GAAGCAGCTGGTTCAGTGGGTGGAGTACTAGACGTGCAATCGTGATAAGAAACGTCGCCT
TCAGATAACCTCTACGAAAGGAAGGCAGAAACGACACGACTGTGACCTAAGGGAAGACTT
GTAACATCACCTGTCTCCAGGTACATACCATGCACACCTATCTACAGTGTCCTATTGTGA
TACAGCCGCTTCATTCATAGAATATAAATTAAATATACTGATTGAAATACTCTATGAAGT
TCCATAGCAGTTGTCTTACACTGGCCAGGTAGCAACAATTACTAGTTGTAGATGTTTTAT
GGTAATTGTCCAGTCAATAGTCGACAATTTT

Coding sequence

>YALI0C19624g.cds
ATGCTACGAACACTTCGAACCTCTCAATTGGCACGATCCGGCTTTGGAACGCCCTCTTTT
GGTCTGCGATTTAACTCCGTTGGCCGGGCGTTTGTCTTCTCCCAAACTGGCGAGCCCAAG
GACGTGATCCAGGTGCTGGAGTATCCCATTGAGAAGCCTCTGGAGAACCAGGTGCTGCTT
AAGTCGCTCGGATTCACTATCAACCCGGCTGACATTAACCAATTGGAGGGCGTTTATCCC
TCTGTGCCTCCCAAATCCGTCCAGATCAACAACGAAGACGCTGCTATTGGAGGCAACGAG
GGTCTGTTCCAGGTGCTTGATCCCGGTGCCAAGTCTGGACTGAAGAAGGGCGACTGGGTT
CTTCCTCGAAAGACATGCTTTGGAACCTGGCGATCACATGCTCTGGTGGAGGCTGACACC
GTTGTGAAGATTGACAACACTGATCTCACCAAGGTGCAGGCTACCACTGTGTCTGTTAAC
CCCTCTACTGCTTACGAGATGCTCAAGGACCTCAAGGAGGGCGACTGGTTCATTCAGAAC
GGTGGTAACAGCGGTGTTGGGCGAGCAGCTATTCAGATTGGCCACATCCGAGGTCTCAAG
AGCATCTCTGTGGTCAGAGATCGTCCTGATCTCGAAGTGCTCAAGAAGGAACTCACCGAT
CTGGGCGCCACCCACGTAATCACTGAGGAGGAGGCCTCGGATAAGTTGTTTTCCAAGCAG
ATCAAGTCCTGGACCGGCGGAAAGATTAAGCTGGCTCTCAACTGTATTGGAGGAAAGAGC
GCCACTTCCATCATGCGACAGCTGGGAGCCGGAGGATCCATTGTCACTTACGGAGGCATG
TCTAAGAAGCCTCTTACGTTCCCCACTGGCCCTTTTATCTTCAAGGACATCACTGCCAAG
GGCTACTGGCTGACTCGATGGGCCGATAAGCACCCTGAAGAGAAGGCTAAGACCATTGAG
AACATCTTCAAGTTCTACCGAGAAAAGAAGTTTGTGGCTCCTCCCGTTAACATTTCGACT
CTGGACTTCAGCAAGGGTAACGACGTTGTTCTGTCCGAGTTTTTGGACGCCCTTGGAAAG
GCTCAGAAGGGCGGAGGTAAGAAGCAGCTGGTTCAGTGGGTGGAGTACTAG

Predicted translation product

>YALI0C19624g.aa
MLRTLRTSQLARSGFGTPSFGLRFNSVGRAFVFSQTGEPKDVIQVLEYPIEKPLENQVLL
KSLGFTINPADINQLEGVYPSVPPKSVQINNEDAAIGGNEGLFQVLDPGAKSGLKKGDWV
LPRKTCFGTWRSHALVEADTVVKIDNTDLTKVQATTVSVNPSTAYEMLKDLKEGDWFIQN
GGNSGVGRAAIQIGHIRGLKSISVVRDRPDLEVLKKELTDLGATHVITEEEASDKLFSKQ
IKSWTGGKIKLALNCIGGKSATSIMRQLGAGGSIVTYGGMSKKPLTFPTGPFIFKDITAK
GYWLTRWADKHPEEKAKTIENIFKFYREKKFVAPPVNISTLDFSKGNDVVLSEFLDALGK
AQKGGGKKQLVQWVEY*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

YALI0C19624g

YALI0C19624g

Genomic environment map

Computed results

Homologs and Orthologs

Protein YALI0C19624p

Protein domain map

Computed results for YALI0C19624p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes