HomeYALI0C16643g
similar to uniprot|P40352 Saccharomyces cerevisiae YJR035w RAD26 Protein involved in transcription-coupled repair nucleotide excision repair of UV-induced DNA lesions
Element type: CDS
Element length: 3258 nucleotides,
on sense strand of
Yali0C: 2345132..2348389.
Other names:
YALI-CDS0353.1
YALI-IPF7047
Coding sequence: 1086 codons.
Element length: 3258 nucleotides,
on sense strand of
Yali0C: 2345132..2348389.
Other names:
YALI-CDS0353.1
YALI-IPF7047
Coding sequence: 1086 codons.
Database cross references:
EMBL: CR382129
GeneID: 2909291
HOGENOM: Q6CBQ0
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382129
GeneID: 2909291
HOGENOM: Q6CBQ0
Homologs and Orthologs
Homologs in protein family: GL3M4588Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0C16643p 
similar to uniprot|P40352 Saccharomyces cerevisiae YJR035w RAD26 DNA repair and recombination protein P17.1.f16.1
Protein domain map
Database cross references:
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
KEGG: yli:YALI0C16643g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_501912.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6CBQ0
UniprotKB: Q6CBQ0_YARLI
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
KEGG: yli:YALI0C16643g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_501912.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6CBQ0
UniprotKB: Q6CBQ0_YARLI
Sequence data
>YALI0C16643g.nt GTTGTTTCCGCAGACTAAATCTGCTCAATTGATTACATATATGCTCATTACGCCGTTCTA AATGCTCATTATTTGCTCACTGGATAGAGACATGGGGTCCGAAGCCACATGGACGTGTGA CTTTTGGTAAACTGAAAGGTCTTGTTTGTTTTTGTGGATAACACGTGAGATACCGACTAT TCGGCTCACAGACGGATATTTCTCAATTTTTCCTCGATTTAATCCGATTTTCAATTGTGT ATTTCGTCTCATGCTCCCCACATTAACGGACTTGCGCCATTCATGTACCGTTGATGACTC GGTAAATTGAAAAAGGAAATTCAGAAAATTCGCACTAGTCAGAAAATTCCAAACAAGTCA GAAAGTTCCAAGATAATTCAGAAAATTCCAAGATAATTCAGTAAATCGGAAGAAAAAAAA CCATATGCTTCAAAAAACACCAATATTCATCAACAATCTCACTTTTTCGCCTCTCAGTGC GAAAAGCAAAAACACTAAATTACTGGAGGTGTATTTGTCAGCATCTCTGACTGTCACCCA ACAGGACTTACTGTACCGGTAGGAAAGAAATAAGACTCTACATGGGTGTCATGGGTGTTT CTATGCCTTTCTCTGTCAGATAACAGACCCAATCATCTCCTAACTACTCTTATAAGTCGC TGGCATCGACCTCATGATTCTTCCTCCAACGGTGGAAACACGACGGCGTTCCCTCATGTG ATTATTGGAGGTTTTCCCGTATATATGATCCTTCTGGCTTGATTTATCGGCTCAGAGTGA AGTTGCCCAAGGATATCAATGGTTTATCACCCTTATTTCTCCATATTTTTGTTTCCTGCC TGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTAATTTATTTTTC TGATTTTCGCCACAAAAATTTTAGGTTACGATTAACCTCGATGAACATGTACGCTGTCTG TTAATTAATTTTTTCCATTATATTGACTAGCGCAACATTGATGGACGAGTTATCACGGCT TTCGGTGGACGTGGTCGACCAGGGCACGCTGGAGAACCAGATCACCAATGAGGCAGACTC GATTCTCAAGAAGCGCGAGTTTGAGATCGACACCAAACGGCTCTCCAAGGCGCAGGATGC TGAAAAGACGTTTCTCAGTAAACTGCGGTCCATGGAGCGAAAGATCAATGATCCCGCCAC CAAGATCAGCGAGCGCGAGAAGCTGAAGCGCGACGTGGCCACTCTCAAGCGCACCGAGCT CGCCACGGTCCAGCAGGACATTTCTGACATCAGACAGCGACTACAAGAGAACGACACCAG CAGTGCAACTACAGAGCTACAGGCGTCGGATCGACATGAAGGCGAGTCGGAACAGGAGTA CCTTGTTCGAACCGGAAAAATCACCCCGTTCGCCAACACCAGGGGGTTTACTAGAGGAAA AGGAGATGTGACTCAGAACATTGATACCAGCAAGCCATATACTTCGAGCACTATTACTGA ACTCGGTGATATCAAAGAGGACGACGACGATGACGGAGAGGATGAAATCAAGGACGAAGA AGATGCTGAAGACGACGCGGACGCTTACTCATCTGGATACACTACGGACGAGATTGAACC TGAAGATATGGAGCTTGTGGAGCTGAAAAAGAAGCGGAGACGTACCGAACGACCAGAGAC GGAAGCTATCGACGACGGAGACGAGTGGTCTTATCAGCAACGGCTTAATTGGTGGGTGGA AAAGCGCCAAAAGGCTAGGGCCAGAGCCGGAGTCATCGTTCCTGCCAGTGACTATGCCAA GGAGGAATGGCTTTTAGACGGACCTGAGGCCGATGCTATTCTTGAGGGCAACTTCAAGGT GCCTGGAGAAATCTTCAATGCTCTATTTGACTATCAGAAGACGTGTGTTCAGTGGTTGTG GGAGCTGCATACGCAAAAGACGGGAGGTATCATTGGAGACGAGATGGGTCTGGGCAAAAC TATTCAAATTATCAGTTTCCTGGCCGGTCTGCATCATTCTGGTCTGCTTACCAAACCCGT CATTGTCGTGTGTCCTGCCACAGTCATGAAACAGTGGGTTGAGGAGTTCCATAAGTGGTG GCCGGCTCTGAGAGTGGTGATTTTGCATAGTATGGGCGAGGGGAGCAAGGGCAAAAAGAA GCGCAAAGGTGAGATTGACTCTGATGACGATGATGATGAAATGATTAGACCCACTCCTTC AAGCACCAAGAATCTCGTTGAGACTATTGACAAGGTGTTTAAGGACGGCCACGTGGTTGT CACGACCTATGCAGGTCTCAAATCGTATCGCTCGCTGCTTCTGGACCGTGAATGGGGCTA TTGCATTCTTGATGAGGGTCACAAGATTCGAAATCCTGACTCTCAAATCACTCTCGACTG CAAGCAGCTCAAGACGGTGCATCGGCTGATTCTGTCAGGAACACCTATTCAGAACAACCT CACCGAGCTGTGGAGTTTGTTGGATTTTGTTTGTCCCGGTCGACTGGGTACCCTGCCTGT CTTTCACTCGCAGTTTGCTGTTCCTATCAACGTTGGAGGGTACGCCAATGCTACTAACAT CCAGGTCCAGACTGCCTACAAGTGTGCCGTTGTACTTCGAGACCTGATCGCACCGTATCT CTTGCGTCGAATGAAGACTGATGTGGCCACTGATCTGCCCAAGAAGGAGGAGAAGGTGCT CTTCTGCAAACTGACGGACTCGCAAAGGCTGCATTACAAGGGTTTCCTCAAGTCCGAAGA ACTCAAATCGATTCTGGCCGGAAAACGGCAGTCACTATTTGGTATCGACATCCTACGTAA GATTTGCAACCACCCTGACCTCGCGTCTCGAGAGATCCTCAAGAAGACAGCGGATTACTA CTACGGAGACCCTGCCAAATCAGGAAAGATGCAGGTGGTCAAGGCTCTTGTGGATCTGTG GAAGAAGCAGGGTCACAGGACGCTTCTTTTCTGCCAGACTCGTCAGATGTTGGAGATCCT GGAAGACTTCTTTGCTAACATGCCTGACATCAAGTATCTTCGAATGGACGGCACCACACC CATTTCCAAGCGGCAGGATATGGTAGACACATACAACAAGGACACGTCGTACGATTTGTT TTTGTTGACAACTCGAGTGGGAGGGCTTGGTGTGAACCTCACTGGAGCAAATCGTGTCAT CATTTTTGACCCTGATTGGAACCCCAGTACGGATCTGCAAGCTCGAGAACGATCCTGGCG TCTGGGACAGAAACGAAATGTTGTTGTCTACCGCTTGATGACGGCAGGTACGATTGAAGA GAAAATCTATCATCGGCAGATCTTCAAGCAGTTTCTGACCAACAAGATTCTCAAGGATGC CAAGCAGCGTCGTTTCTTCAAGATGAACGACATTCACGATCTGTTTTCGCTTGACGACGG AGAAGGAGACACCACCGAGACGGGTATGATTTTCTCCGGTTCCGAAAAGAAGATTGAGAA CAAGAAACCCGAGAAGAAGATGAAGGACGACGACGACTTCTACCAGGTGGTCGGTCTCAA TGGAGTGTCCAAGCTTGAGAAGTTTGAGAACGGCGAGGAGGAACGAGCCGAGAGTAATGA CGGAGATAACGATGACAACATTCTCAACGACATCTTCTCTCAGACCGGTGTGCATTCTGC ACTTGAACACGACGCTATCATGGATGCGTCTCGTCCAGAGACCGTTATCATCGAACGAGA GGCTAAGAGAGTTGCTGAAGTAGCTGCCAAAGCTCTCAGAGACTCGCGGAAGAAGGCACA GGCCAACGACATTGGAACTGTGACTTGGACGGGCAAGTTTGGCAGTGCCGGAAAGTTTGG CAAGAAGAAGCAGTCGGCTGGTAAAGTCGGAGTGCCGAAATTTGGGTCAGACAAGTTCTC TTCGTCCTCCATTCTGCAAAACATTAAGGCGAAGAAATCCCTGGAGGAGTCTACTAATGC ATACACTGGTCTGATCAACATGAGCGATCTGGACAAGGTCAAGCTGCTGGAGAAGATCAG CGAGAGTCTCAAACTGGCCGGAGCAGGAGGCTTGTCGTCGAAAGACATTGCCAACGAGTT TGCTCTCAAGTTGACTAATCAGGAGGAGGTGGCAGTCATGAGACAGCTACTGAGACAGGC TGGAGAGTGGAATGGAGCCACGAAGAAGTGGAGGTATAAGGCCGTCGAGGATGTGGGAGA TGAGGACGAGGAGATACAGGAGGTGGTCCCCGTGGATGAAATGGGAAATAAACTGTAGAT AGATATTTATAATGCATGCTTCAACATGAATCTGATTATTGTCATCAGGCACGACAACTA TTACTCGGACAACGAAAAGGAAAACCAATCTTGCCTTGCCTACAGTACCAGTTATGGGAT AAAAATATGTAAATCCATTTATACATGATGCAAAGATTCTTCTAGTAGTTGAGCTGGTTA ATCACAGCATTACGTCTTCCGTTGACCGGCCTCCTTCGCACTCGACGATAGCGCACTCGG ACAACGTCCTCAACTGTACTACCTCCGACTCATCAAATGTACTACCACCGACTCATCA
>YALI0C16643g.cds ATGGACGAGTTATCACGGCTTTCGGTGGACGTGGTCGACCAGGGCACGCTGGAGAACCAG ATCACCAATGAGGCAGACTCGATTCTCAAGAAGCGCGAGTTTGAGATCGACACCAAACGG CTCTCCAAGGCGCAGGATGCTGAAAAGACGTTTCTCAGTAAACTGCGGTCCATGGAGCGA AAGATCAATGATCCCGCCACCAAGATCAGCGAGCGCGAGAAGCTGAAGCGCGACGTGGCC ACTCTCAAGCGCACCGAGCTCGCCACGGTCCAGCAGGACATTTCTGACATCAGACAGCGA CTACAAGAGAACGACACCAGCAGTGCAACTACAGAGCTACAGGCGTCGGATCGACATGAA GGCGAGTCGGAACAGGAGTACCTTGTTCGAACCGGAAAAATCACCCCGTTCGCCAACACC AGGGGGTTTACTAGAGGAAAAGGAGATGTGACTCAGAACATTGATACCAGCAAGCCATAT ACTTCGAGCACTATTACTGAACTCGGTGATATCAAAGAGGACGACGACGATGACGGAGAG GATGAAATCAAGGACGAAGAAGATGCTGAAGACGACGCGGACGCTTACTCATCTGGATAC ACTACGGACGAGATTGAACCTGAAGATATGGAGCTTGTGGAGCTGAAAAAGAAGCGGAGA CGTACCGAACGACCAGAGACGGAAGCTATCGACGACGGAGACGAGTGGTCTTATCAGCAA CGGCTTAATTGGTGGGTGGAAAAGCGCCAAAAGGCTAGGGCCAGAGCCGGAGTCATCGTT CCTGCCAGTGACTATGCCAAGGAGGAATGGCTTTTAGACGGACCTGAGGCCGATGCTATT CTTGAGGGCAACTTCAAGGTGCCTGGAGAAATCTTCAATGCTCTATTTGACTATCAGAAG ACGTGTGTTCAGTGGTTGTGGGAGCTGCATACGCAAAAGACGGGAGGTATCATTGGAGAC GAGATGGGTCTGGGCAAAACTATTCAAATTATCAGTTTCCTGGCCGGTCTGCATCATTCT GGTCTGCTTACCAAACCCGTCATTGTCGTGTGTCCTGCCACAGTCATGAAACAGTGGGTT GAGGAGTTCCATAAGTGGTGGCCGGCTCTGAGAGTGGTGATTTTGCATAGTATGGGCGAG GGGAGCAAGGGCAAAAAGAAGCGCAAAGGTGAGATTGACTCTGATGACGATGATGATGAA ATGATTAGACCCACTCCTTCAAGCACCAAGAATCTCGTTGAGACTATTGACAAGGTGTTT AAGGACGGCCACGTGGTTGTCACGACCTATGCAGGTCTCAAATCGTATCGCTCGCTGCTT CTGGACCGTGAATGGGGCTATTGCATTCTTGATGAGGGTCACAAGATTCGAAATCCTGAC TCTCAAATCACTCTCGACTGCAAGCAGCTCAAGACGGTGCATCGGCTGATTCTGTCAGGA ACACCTATTCAGAACAACCTCACCGAGCTGTGGAGTTTGTTGGATTTTGTTTGTCCCGGT CGACTGGGTACCCTGCCTGTCTTTCACTCGCAGTTTGCTGTTCCTATCAACGTTGGAGGG TACGCCAATGCTACTAACATCCAGGTCCAGACTGCCTACAAGTGTGCCGTTGTACTTCGA GACCTGATCGCACCGTATCTCTTGCGTCGAATGAAGACTGATGTGGCCACTGATCTGCCC AAGAAGGAGGAGAAGGTGCTCTTCTGCAAACTGACGGACTCGCAAAGGCTGCATTACAAG GGTTTCCTCAAGTCCGAAGAACTCAAATCGATTCTGGCCGGAAAACGGCAGTCACTATTT GGTATCGACATCCTACGTAAGATTTGCAACCACCCTGACCTCGCGTCTCGAGAGATCCTC AAGAAGACAGCGGATTACTACTACGGAGACCCTGCCAAATCAGGAAAGATGCAGGTGGTC AAGGCTCTTGTGGATCTGTGGAAGAAGCAGGGTCACAGGACGCTTCTTTTCTGCCAGACT CGTCAGATGTTGGAGATCCTGGAAGACTTCTTTGCTAACATGCCTGACATCAAGTATCTT CGAATGGACGGCACCACACCCATTTCCAAGCGGCAGGATATGGTAGACACATACAACAAG GACACGTCGTACGATTTGTTTTTGTTGACAACTCGAGTGGGAGGGCTTGGTGTGAACCTC ACTGGAGCAAATCGTGTCATCATTTTTGACCCTGATTGGAACCCCAGTACGGATCTGCAA GCTCGAGAACGATCCTGGCGTCTGGGACAGAAACGAAATGTTGTTGTCTACCGCTTGATG ACGGCAGGTACGATTGAAGAGAAAATCTATCATCGGCAGATCTTCAAGCAGTTTCTGACC AACAAGATTCTCAAGGATGCCAAGCAGCGTCGTTTCTTCAAGATGAACGACATTCACGAT CTGTTTTCGCTTGACGACGGAGAAGGAGACACCACCGAGACGGGTATGATTTTCTCCGGT TCCGAAAAGAAGATTGAGAACAAGAAACCCGAGAAGAAGATGAAGGACGACGACGACTTC TACCAGGTGGTCGGTCTCAATGGAGTGTCCAAGCTTGAGAAGTTTGAGAACGGCGAGGAG GAACGAGCCGAGAGTAATGACGGAGATAACGATGACAACATTCTCAACGACATCTTCTCT CAGACCGGTGTGCATTCTGCACTTGAACACGACGCTATCATGGATGCGTCTCGTCCAGAG ACCGTTATCATCGAACGAGAGGCTAAGAGAGTTGCTGAAGTAGCTGCCAAAGCTCTCAGA GACTCGCGGAAGAAGGCACAGGCCAACGACATTGGAACTGTGACTTGGACGGGCAAGTTT GGCAGTGCCGGAAAGTTTGGCAAGAAGAAGCAGTCGGCTGGTAAAGTCGGAGTGCCGAAA TTTGGGTCAGACAAGTTCTCTTCGTCCTCCATTCTGCAAAACATTAAGGCGAAGAAATCC CTGGAGGAGTCTACTAATGCATACACTGGTCTGATCAACATGAGCGATCTGGACAAGGTC AAGCTGCTGGAGAAGATCAGCGAGAGTCTCAAACTGGCCGGAGCAGGAGGCTTGTCGTCG AAAGACATTGCCAACGAGTTTGCTCTCAAGTTGACTAATCAGGAGGAGGTGGCAGTCATG AGACAGCTACTGAGACAGGCTGGAGAGTGGAATGGAGCCACGAAGAAGTGGAGGTATAAG GCCGTCGAGGATGTGGGAGATGAGGACGAGGAGATACAGGAGGTGGTCCCCGTGGATGAA ATGGGAAATAAACTGTAG
>YALI0C16643g.aa MDELSRLSVDVVDQGTLENQITNEADSILKKREFEIDTKRLSKAQDAEKTFLSKLRSMER KINDPATKISEREKLKRDVATLKRTELATVQQDISDIRQRLQENDTSSATTELQASDRHE GESEQEYLVRTGKITPFANTRGFTRGKGDVTQNIDTSKPYTSSTITELGDIKEDDDDDGE DEIKDEEDAEDDADAYSSGYTTDEIEPEDMELVELKKKRRRTERPETEAIDDGDEWSYQQ RLNWWVEKRQKARARAGVIVPASDYAKEEWLLDGPEADAILEGNFKVPGEIFNALFDYQK TCVQWLWELHTQKTGGIIGDEMGLGKTIQIISFLAGLHHSGLLTKPVIVVCPATVMKQWV EEFHKWWPALRVVILHSMGEGSKGKKKRKGEIDSDDDDDEMIRPTPSSTKNLVETIDKVF KDGHVVVTTYAGLKSYRSLLLDREWGYCILDEGHKIRNPDSQITLDCKQLKTVHRLILSG TPIQNNLTELWSLLDFVCPGRLGTLPVFHSQFAVPINVGGYANATNIQVQTAYKCAVVLR DLIAPYLLRRMKTDVATDLPKKEEKVLFCKLTDSQRLHYKGFLKSEELKSILAGKRQSLF GIDILRKICNHPDLASREILKKTADYYYGDPAKSGKMQVVKALVDLWKKQGHRTLLFCQT RQMLEILEDFFANMPDIKYLRMDGTTPISKRQDMVDTYNKDTSYDLFLLTTRVGGLGVNL TGANRVIIFDPDWNPSTDLQARERSWRLGQKRNVVVYRLMTAGTIEEKIYHRQIFKQFLT NKILKDAKQRRFFKMNDIHDLFSLDDGEGDTTETGMIFSGSEKKIENKKPEKKMKDDDDF YQVVGLNGVSKLEKFENGEEERAESNDGDNDDNILNDIFSQTGVHSALEHDAIMDASRPE TVIIEREAKRVAEVAAKALRDSRKKAQANDIGTVTWTGKFGSAGKFGKKKQSAGKVGVPK FGSDKFSSSSILQNIKAKKSLEESTNAYTGLINMSDLDKVKLLEKISESLKLAGAGGLSS KDIANEFALKLTNQEEVAVMRQLLRQAGEWNGATKKWRYKAVEDVGDEDEEIQEVVPVDE MGNKL*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0C16643g