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Element type: CDS
Element length: 1308 nucleotides,
on anti-sense strand of
Yali0C: complement(join(891654..892767,891460..891566)).
Other names:
YALI-CDS2921.1
YALI-IPF6496
Coding sequence: 407 codons.
Element length: 1308 nucleotides,
on anti-sense strand of
Yali0C: complement(join(891654..892767,891460..891566)).
Other names:
YALI-CDS2921.1
YALI-IPF6496
Coding sequence: 407 codons.
Database cross references:
EMBL: CR382129
GeneID: 2909217
HOGENOM: Q6CCT6
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382129
GeneID: 2909217
HOGENOM: Q6CCT6
Homologs and Orthologs
Homologs in protein families: GL3R0042 GL3R0042.N2Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0C06644p 
Protein domain map
Database cross references:
InterPro: IPR004886
KEGG: yli:YALI0C06644g
Pfam: PF03198
RefSeq: XP_501526.1
UniProtKB/TrEMBL: Q6CCT6
UniprotKB: Q6CCT6_YARLI
InterPro: IPR004886
KEGG: yli:YALI0C06644g
Pfam: PF03198
RefSeq: XP_501526.1
UniProtKB/TrEMBL: Q6CCT6
UniprotKB: Q6CCT6_YARLI
Gene Ontology terms
None available yet
Sequence data
>YALI0C06644g.nt AGCTGTGGTATGGTGTGATGTGCATGGGTGCGACAGAAAGGTGGGGTGCAGAAATATGAG TATTTTAGGATGGTTTAATTGGATTAAATAAATAAATAAATGAAAGAGAAATACGATAAA TTCATGACAGCGTATGGAGAGTGTATTGGATAGAAGAGTTCTATAGTAGTAAAATCAGTA GTATAATGTATACCAAGGAACCATTAGCAGCTCAAAGATCCCACCACCTCTGTTATGTGA CCTTGTGGGCAGTGATATGGCGTGTCTCTGATGTATAAATAGAGATCCACGGAAGCTCAC TGACTGCTGCTGTTTTTTTTTTTTGCATATAAAAGCAAGGGAGGTTGCCTAAGACGCTTC AGCCTAATTACACTACAAGTACAAGTACAAGTACAGTACAGTACAGTACATACTTCATTG CTCCCATACCCCAATTAAGGCGGCGGCCATAACACCGTCTCCGTGGTAACGTGAAAACGC TTTTGTGACCATATCTAAAAAGACATGGCCTAATTCTCAGCTACTCACAACCTGCCTCTC TTCATCCACCACACCCTATCAAGCAACACACTGAAGAAACATGAGGACCGTCCTGCGACT TTTCGGACTGGCGGCCACAGTTCTGGCCGGAATTGCTCCTATCGAGTGGGAAGGCAGCAC TTCCGCGACTCGGTCACCAAAGAACCGGTATGATACCTTCCTCCTTGACACCCCCCCTTT TGATTCCACCCTCAACACATCAGAGCTTGTGATACCAGTTTGTGTTACTAACGCAGTTCT TCTTCAAGGGCATAGACTACCAGCCCGGCGGGTCGTCGGCGTTTGTGGGCCGATCGGACC CGCTGTCAGACTACGAGGCATGTTCCAGAGATATTTACCTGTTTCAGCAGCTCGGAGTCA ATGTGAGTATAATCCACTCTTAACAGTGACTTGCACCCCTCAGCTAACATAGGCAATCCG CGTCTACACAGTCAACCCAGACATCAACCACGACGAATGCATGACCCTGCTGGCAGAAGC AGGCATCTACCTCATTCTCGACGTCAACTCCCCACGCATTGGCGAGTCGCTAAACCGATA CGAGCCCTGGACCACCTACCATGAAAAGTACCTGGAGCACATCTTCAAGGTTGTCGAGCA GTTCTCCCATTACAACAACACTCTGGCTTTCTTTGCCGGCAACGAGGTCGTCAACGATGA CCAGTCCGCCATGGTGTCGCCCAACTACATCAAGGCTGTAGTGAGAGACCTCAAGTACTA CCTAGCCAACCAGTCGCCCCGAAAGATTCCCGTCGGATACTCTGCCGCAGACGATCTCAA GTACAGAACCTCGTTGGCACAATACCTCGAGTGTGGTGACGAGATGTCTTCCGTCGACTT TTACGGAGTCAACTCCTATCAGTGGTGTGGCGAACAGTCTTTCGTGTCTTCCGGATACGA CAGACTCGTGGACGACTACAGGGACTACTCGCTGCCGCTCATCTTCTCCGAGTACGGATG CAACGAAGTCAAGCCCCGTACTTTCCAGGAGGTCCGAGCAGTTTACTCAAGCAGCATGAC TGACGTATTTTCTGGAGGGCTCATTTACGAGTTCTCCCAGGAGCCCAACGACTATGGTCT TGTCCAGATCTACAAGAACCACTCCGCGCAGGTTCTGGAGGACTTTGAGGCACTCAAGAA AGCATACCACGACGCCCCCAAGGCCAAGCTGTCAGACTTCCGAGCTGTGGAGCGACCTCA GAGGTGCGAGCTCGTGTATCCCAACATCAACACCATGAACCCTCTCCCCGACACGTTTGG TCTGGACATGATAACTCGTGGCGTGCGGGCACCCAGGGGCAAGTATGTTGACTTGCACAA GCGGGGTACATCGTACACCATCTACGACCTGGAAGGAAATGTGATCGAGGACACTGAGGT GCAGCAGGTGATTGATCTGAAGGAGCCTCTTGCGGCACCGCCCCCATCGCCCCCCACACG GAAGGCCCCCGCTGTCCCAGAGCCAAAGGACCCTGTGGAGCCAGTCTACGATGAGTATCC GAAGAAAGTCGCTACCGTTGAAGAGGAGGATGATCACGAGGTGGTGAACCCACGGAGACC ATTTGAGAGAAAGAgtgagtgtgatagttgcggtaccgacatcgacggtgatggctggag ccgagatttcttttcatcctttaattatgctaacttactagAGACAAGCACCGGGTCATA CAGAGACACGGCAGTGCTGGGGTGGATCAAGTACCTGGTGTCAGTGATGCTTGGCGTGGT GGTGGTGGAAGTGGTGCGGCTGATGTAGGTCGAGGAGGTTTTGGTGTTTGGTCTGTGCGT AAGCCTGGCACTCCTGCTGGCCGACGGCAACGTTTTCGAAGTCAGAACAAGCCGGCTCCA CTCTCACAGAGGGAGCTCAAGCACCGAGTCTATGCACTGTCCAACCTTGGTGCGTTCCCT CGGCGTGCACGACGACCTCTTGGGGGCGTGAGGCTTGCGCGGAACCAACAAAATCAGCTT GTGATTATTTTATAAGAGAATTCGCTTTCACTATTCTTTTCCGTATTGTTGCTAACAATA AATACATTAATATTATTATGGTAAAAAT
>YALI0C06644g.cds ATGACCCTGCTGGCAGAAGCAGGCATCTACCTCATTCTCGACGTCAACTCCCCACGCATT GGCGAGTCGCTAAACCGATACGAGCCCTGGACCACCTACCATGAAAAGTACCTGGAGCAC ATCTTCAAGGTTGTCGAGCAGTTCTCCCATTACAACAACACTCTGGCTTTCTTTGCCGGC AACGAGGTCGTCAACGATGACCAGTCCGCCATGGTGTCGCCCAACTACATCAAGGCTGTA GTGAGAGACCTCAAGTACTACCTAGCCAACCAGTCGCCCCGAAAGATTCCCGTCGGATAC TCTGCCGCAGACGATCTCAAGTACAGAACCTCGTTGGCACAATACCTCGAGTGTGGTGAC GAGATGTCTTCCGTCGACTTTTACGGAGTCAACTCCTATCAGTGGTGTGGCGAACAGTCT TTCGTGTCTTCCGGATACGACAGACTCGTGGACGACTACAGGGACTACTCGCTGCCGCTC ATCTTCTCCGAGTACGGATGCAACGAAGTCAAGCCCCGTACTTTCCAGGAGGTCCGAGCA GTTTACTCAAGCAGCATGACTGACGTATTTTCTGGAGGGCTCATTTACGAGTTCTCCCAG GAGCCCAACGACTATGGTCTTGTCCAGATCTACAAGAACCACTCCGCGCAGGTTCTGGAG GACTTTGAGGCACTCAAGAAAGCATACCACGACGCCCCCAAGGCCAAGCTGTCAGACTTC CGAGCTGTGGAGCGACCTCAGAGGTGCGAGCTCGTGTATCCCAACATCAACACCATGAAC CCTCTCCCCGACACGTTTGGTCTGGACATGATAACTCGTGGCGTGCGGGCACCCAGGGGC AAGTATGTTGACTTGCACAAGCGGGGTACATCGTACACCATCTACGACCTGGAAGGAAAT GTGATCGAGGACACTGAGGTGCAGCAGGTGATTGATCTGAAGGAGCCTCTTGCGGCACCG CCCCCATCGCCCCCCACACGGAAGGCCCCCGCTGTCCCAGAGCCAAAGGACCCTGTGGAG CCAGTCTACGATGAGTATCCGAAGAAAGTCGCTACCGTTGAAGAGGAGGATGATCACGAG GTGGTGAACCCACGGAGACCATTTGAGAGAAAGAAGACAAGCACCGGGTCATACAGAGAC ACGGCAGTGCTGGGGTGGATCAAGTACCTGGTGTCAGTGATGCTTGGCGTGGTGGTGGTG GAAGTGGTGCGGCTGATGTAG
>YALI0C06644g.aa MTLLAEAGIYLILDVNSPRIGESLNRYEPWTTYHEKYLEHIFKVVEQFSHYNNTLAFFAG NEVVNDDQSAMVSPNYIKAVVRDLKYYLANQSPRKIPVGYSAADDLKYRTSLAQYLECGD EMSSVDFYGVNSYQWCGEQSFVSSGYDRLVDDYRDYSLPLIFSEYGCNEVKPRTFQEVRA VYSSSMTDVFSGGLIYEFSQEPNDYGLVQIYKNHSAQVLEDFEALKKAYHDAPKAKLSDF RAVERPQRCELVYPNINTMNPLPDTFGLDMITRGVRAPRGKYVDLHKRGTSYTIYDLEGN VIEDTEVQQVIDLKEPLAAPPPSPPTRKAPAVPEPKDPVEPVYDEYPKKVATVEEEDDHE VVNPRRPFERKKTSTGSYRDTAVLGWIKYLVSVMLGVVVVEVVRLM*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0C06644p