HomeYALI0C03179g
similar to uniprot|Q96VQ7 Emericella nidulans Serine palmitoyl CoA transferase subunit LCBA
Element type: CDS
Element length: 1638 nucleotides,
on anti-sense strand of
Yali0C: complement(425415..427052).
Other names:
YALI-CDS1989.1
YALI-IPF7882
Coding sequence: 546 codons.
Element length: 1638 nucleotides,
on anti-sense strand of
Yali0C: complement(425415..427052).
Other names:
YALI-CDS1989.1
YALI-IPF7882
Coding sequence: 546 codons.
Database cross references:
EMBL: CR382129
GeneID: 2909065
HOGENOM: Q6CD74
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382129
GeneID: 2909065
HOGENOM: Q6CD74
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.N2Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0C03179p 
Protein domain map
Database cross references:
Gene3D: G3DSA:3.40.640.10
InterPro: IPR004839
InterPro: IPR015421
KEGG: yli:YALI0C03179g
Pfam: PF00155
RefSeq: XP_501388.1
UniProtKB/TrEMBL: Q6CD74
UniprotKB: Q6CD74_YARLI
Gene3D: G3DSA:3.40.640.10
InterPro: IPR004839
InterPro: IPR015421
KEGG: yli:YALI0C03179g
Pfam: PF00155
RefSeq: XP_501388.1
UniProtKB/TrEMBL: Q6CD74
UniprotKB: Q6CD74_YARLI
Gene Ontology terms
| GO:0030170 | pyridoxal phosphate binding |
| GO:0016769 | transferase activity, transferring nitrogenous groups |
| GO:0009058 | biosynthetic process |
Sequence data
>YALI0C03179g.nt ATTCTGGGAAGTGGATTCGATCCATAAAGACATTTTTACTGATTTATCAGGGAAAAATGG TCATGTTTTTTTCTCGAGCACGGCTAAATGAGCACATTCGGCTGAAAACACAGCTTTGTT AACTAACACATAGAAAACGCCTTTGAAAGTCAATACTGGAGCGATGAGAGGAACAAGAGT GTTATATATGTCACAAGCGCAAGAGTATTCCATGTCACAAGCGTAAGAGTTATCTATCTC TTACTTAAATTATTCGTCACTTCTCATGAATGCGCCATTCTCAAGGGGCTAAATGGCGCG TGTAAAAGTTTATATGTATTGAAGTTTCTTCTACATCAGCAGTTCTGATCAGTTAAAAAG AGGGTATCACGTTTCGGACTTGGGTCCTTTTTTGTTCTGTAGAGACTGGGTTGATGGAAG AAACAACTTCTTGACTTTCATTGCGACACGACAATTAATAAACGAGATAGATACCACATG GAATCATTTAGATTTTATAAGTAACTCTAAAAAGTTAGACGGAGACTTAACTCCAGCGAC GTAGATACTTGACAATATGTGGCTGTAATACGTCCAAAAGAGGATCGATGCTTCGATGGC ATACGTATGTCCCATTATACACATCTGTGATACAGCATTGGTCTCTTCTTCACGTCACTG CTACACCTTCCGTTTTGAGTGGGATGCAGCAGATGAAGATGAAGCGAAATGACCTTGGAT GAGTTGATTTATGCAAAGAAAAGCCATGAATCAATGTATCAAACAGAAACTAACCAATTC ACAACCCGCTCGCTCCGATCACGTGACCTACAGACCCTCATATCCATCTCATTCTCACAC AACTCCCATGCCTGAACTCTAATACACGTCTCCCCTAAACTTTGCACTACATACGTGACA GTTACTTTTGTACCCAAAAACCAAACCCACACTCACTCCTTAGTGTACCTCTCACCACAC CACACCCCACACTACATCTTCACTCACTACAGAACCGACCATGGAAACCGTAGTGACGAC AGCGACTATTGCCGCTGCGGCCGTGTCACCCTCTCCGACACCCTTCACCACTCAGCATCT GGCCGGCGAGCAGATTCTGTCTAAGCTGCATGCCATTGCCTCCTCGGCAGCATATTGGGG AGAGAAGCTGCCCGGCTCGGCCGTGGTCAAACGATACATTGTGTCCTCGCATCAGAATGA CCCTGTTAGAACCATCTTCGAGCTGCTCTTCTTCCTGTTTGCCGTACGATACTTTGTGGC GTCCCGATACTCGACCTCTAATCCCCACCACGTCAAGTTTACCGAGGCCGACATTGACGA ACTGGTCGCCGAGTGGGAGCCCGAACCTCTCGTACCCAAGACTACTGTCCTGGAGGAGCT GGACATTGGCTCAATCCCGCTGATCCACGGCGAATCGGGCCCCGTGGTTGACGTAGAGTC GGCCCGGGTCGGACACGTCAAGCGAGCCACCAACCTGGCCTCTACCGACTTCCTGGGCTG GGCACGTGACCCCGTCATCAAGGAGCGGGCCGTCCAGATTATCCGTGAGTACGGAGTCGG CTCCTGTGGCCCCCCCGGTTTCTACGGAAACCAGGACATTCACGTTAAGTGTGAGCGGGA CCTCGCCCGGTTCTGCAACTCCGAGTCTGCAATTCTCTACGCGCAGGCCTTCAACACCAT GTCTTCTGTCATCCCCTCGTTCATGAAGCGAGGTGACATTGTCATTGCCGACGACCGAGT GGCCACTTCCACCCAGAAGGGTCTGCAGGTGTCGCGAGTCACCCTGCGATGGTACAAGCA CAACGACATGGAGGACCTCGCACGTGTGCTGGCCAAGACCAACCACGAATTCCGAAAGGC TCCCCTCACCAAGCGATTTATTGTCACCGAGGGTCTGTTTGAGAACACTGGAGACCTCTG TAACCTCCCTGAGATCATCAAGCTCAAGTACCAGTTCAAGTACCGACTGCTGCTGGACGA GTCGCTGTCATTTGGTCTCGTTGGATCTACCGGACGAGGAGTGCTGGAGCACTTCCAGGA GAACGGACACCCCGAGCTCAGCCGACAGCAGATCGAGCTGACCGCAGGCTCCATGGCCAT CGCCTTCTCGTCAGCTGGTGGCTTTGTGGCCGGCTCCGATGCCGCCGTCGAGCATCAGCG AATCGGATCTAACGCTGTCACCTTCTCGGCTTCCATGCCCGGATACCTTGCTGCCGCCTC TTCGCAGGCCATTGAGCGATTGGAGGAGGATAACTCGCGTGTCGTCAAGCTGCGTGAGAA CACCACTCACTTCCGAACCTTTTTGGAGAAGCAGCTGCAGGCCGCCCGAGTTCTGGGCTC CGTGGTCGAGTTTGTGTCATCTCCTCAGTCGCCTCATATCTTGATCAAACTGAGTGATGA CTTCCGGCCCGAGACCCTGACGTCGTTCGTTGCTGCCGAGGAGCTGCTTCAACAGATTGT CGATCTGTGTCTGGCCGAGGGTGTTCTCATCACACGTCACAAACGGGTCCCCACGCACGA GATCATTGCGCTGGAGAGCATGCTGCGAATCGAGGTGTCTGCTTCATTGAGCACTCAGCA GCTGGACGAGTCTGCAAGCATCATTGCAGGTGTTGTCAAGAGCATTTCCAGTGCGTAAAC ACATACACGGCGTACGACGAAGCATGATTGCGTGAATCTGAGAGGTCCGCGCATAGGAAC AGCCCCAGAGATTTTAAAAGAGGTGCAAGTTAGGAATAGATCATTAATATATCATAAGAA CAGAAGGAAGAACGCGTGAGAGTGAACTGGAATGTACAAGTATTTCAAGTAAGATACAAG CCACCATAGGTGCAAGTCCAATACATGGTGAGAGGTCTGGCCCTTTTATCTACTTTAAGG ACCTATGAACAGTTTCGCTGGTTAGAAACACAGCATGTGCACTGACTTGTACAATACG
>YALI0C03179g.cds ATGGAAACCGTAGTGACGACAGCGACTATTGCCGCTGCGGCCGTGTCACCCTCTCCGACA CCCTTCACCACTCAGCATCTGGCCGGCGAGCAGATTCTGTCTAAGCTGCATGCCATTGCC TCCTCGGCAGCATATTGGGGAGAGAAGCTGCCCGGCTCGGCCGTGGTCAAACGATACATT GTGTCCTCGCATCAGAATGACCCTGTTAGAACCATCTTCGAGCTGCTCTTCTTCCTGTTT GCCGTACGATACTTTGTGGCGTCCCGATACTCGACCTCTAATCCCCACCACGTCAAGTTT ACCGAGGCCGACATTGACGAACTGGTCGCCGAGTGGGAGCCCGAACCTCTCGTACCCAAG ACTACTGTCCTGGAGGAGCTGGACATTGGCTCAATCCCGCTGATCCACGGCGAATCGGGC CCCGTGGTTGACGTAGAGTCGGCCCGGGTCGGACACGTCAAGCGAGCCACCAACCTGGCC TCTACCGACTTCCTGGGCTGGGCACGTGACCCCGTCATCAAGGAGCGGGCCGTCCAGATT ATCCGTGAGTACGGAGTCGGCTCCTGTGGCCCCCCCGGTTTCTACGGAAACCAGGACATT CACGTTAAGTGTGAGCGGGACCTCGCCCGGTTCTGCAACTCCGAGTCTGCAATTCTCTAC GCGCAGGCCTTCAACACCATGTCTTCTGTCATCCCCTCGTTCATGAAGCGAGGTGACATT GTCATTGCCGACGACCGAGTGGCCACTTCCACCCAGAAGGGTCTGCAGGTGTCGCGAGTC ACCCTGCGATGGTACAAGCACAACGACATGGAGGACCTCGCACGTGTGCTGGCCAAGACC AACCACGAATTCCGAAAGGCTCCCCTCACCAAGCGATTTATTGTCACCGAGGGTCTGTTT GAGAACACTGGAGACCTCTGTAACCTCCCTGAGATCATCAAGCTCAAGTACCAGTTCAAG TACCGACTGCTGCTGGACGAGTCGCTGTCATTTGGTCTCGTTGGATCTACCGGACGAGGA GTGCTGGAGCACTTCCAGGAGAACGGACACCCCGAGCTCAGCCGACAGCAGATCGAGCTG ACCGCAGGCTCCATGGCCATCGCCTTCTCGTCAGCTGGTGGCTTTGTGGCCGGCTCCGAT GCCGCCGTCGAGCATCAGCGAATCGGATCTAACGCTGTCACCTTCTCGGCTTCCATGCCC GGATACCTTGCTGCCGCCTCTTCGCAGGCCATTGAGCGATTGGAGGAGGATAACTCGCGT GTCGTCAAGCTGCGTGAGAACACCACTCACTTCCGAACCTTTTTGGAGAAGCAGCTGCAG GCCGCCCGAGTTCTGGGCTCCGTGGTCGAGTTTGTGTCATCTCCTCAGTCGCCTCATATC TTGATCAAACTGAGTGATGACTTCCGGCCCGAGACCCTGACGTCGTTCGTTGCTGCCGAG GAGCTGCTTCAACAGATTGTCGATCTGTGTCTGGCCGAGGGTGTTCTCATCACACGTCAC AAACGGGTCCCCACGCACGAGATCATTGCGCTGGAGAGCATGCTGCGAATCGAGGTGTCT GCTTCATTGAGCACTCAGCAGCTGGACGAGTCTGCAAGCATCATTGCAGGTGTTGTCAAG AGCATTTCCAGTGCGTAA
>YALI0C03179g.aa METVVTTATIAAAAVSPSPTPFTTQHLAGEQILSKLHAIASSAAYWGEKLPGSAVVKRYI VSSHQNDPVRTIFELLFFLFAVRYFVASRYSTSNPHHVKFTEADIDELVAEWEPEPLVPK TTVLEELDIGSIPLIHGESGPVVDVESARVGHVKRATNLASTDFLGWARDPVIKERAVQI IREYGVGSCGPPGFYGNQDIHVKCERDLARFCNSESAILYAQAFNTMSSVIPSFMKRGDI VIADDRVATSTQKGLQVSRVTLRWYKHNDMEDLARVLAKTNHEFRKAPLTKRFIVTEGLF ENTGDLCNLPEIIKLKYQFKYRLLLDESLSFGLVGSTGRGVLEHFQENGHPELSRQQIEL TAGSMAIAFSSAGGFVAGSDAAVEHQRIGSNAVTFSASMPGYLAAASSQAIERLEEDNSR VVKLRENTTHFRTFLEKQLQAARVLGSVVEFVSSPQSPHILIKLSDDFRPETLTSFVAAE ELLQQIVDLCLAEGVLITRHKRVPTHEIIALESMLRIEVSASLSTQQLDESASIIAGVVK SISSA*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0C03179p