HomeYALI0B21846g
similar to uniprot|Q00415 Coccidioides immitis 4- hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase)
Element type: CDS
Element length: 1185 nucleotides,
on anti-sense strand of
Yali0B: complement(2865746..2866930).
Other names:
YALI-CDS3316.1
YALI-IPF8953
Coding sequence: 395 codons.
Element length: 1185 nucleotides,
on anti-sense strand of
Yali0B: complement(2865746..2866930).
Other names:
YALI-CDS3316.1
YALI-IPF8953
Coding sequence: 395 codons.
Database cross references:
EMBL: CR382128
GeneID: 2907146
HOGENOM: Q6CDR5
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382128
GeneID: 2907146
HOGENOM: Q6CDR5
Homologs and Orthologs
Homologs in protein families: GL3R4198 GL3R4198.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0B21846p 
Protein domain map
Database cross references:
InterPro: IPR004360
InterPro: IPR005956
KEGG: yli:YALI0B21846g
PANTHER: PTHR11959
PIRSF: PIRSF009283
Pfam: PF00903
RefSeq: XP_501197.1
TIGRFAMs: TIGR01263
UniProtKB/Swiss-Prot: Q6CDR5
UniprotKB: HPPD_YARLI
InterPro: IPR004360
InterPro: IPR005956
KEGG: yli:YALI0B21846g
PANTHER: PTHR11959
PIRSF: PIRSF009283
Pfam: PF00903
RefSeq: XP_501197.1
TIGRFAMs: TIGR01263
UniProtKB/Swiss-Prot: Q6CDR5
UniprotKB: HPPD_YARLI
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>YALI0B21846g.nt AGCTACTTGTTGTAGACGTAGACATACACTATCGTTGTGCAAGAGATCGCTATAAGCTGC AATAGACATCCGTACGTAAGAGACTGCCATAAGTACAAGTACGAACCAATACAACTCGTA CCATTCAAACTCCCCCACAGATCCCTTGAGCACCCTTCACTAGTACAGTATTGTACAAGT AGTTTGTTTTTCCAAAATCAATCCGACTTACCCTTTCCACGTGTAGTGTCCAATCAGAAG ACACACGATAACTGCACCTTGTCATAGAGTCGAGTTATAATACGCATGACAAATTTTTCT CTATAGACGCTTCCCTATAATGAGTTCATTTATTATGTCCTTCAACAGCCGGGCGAGTGA GATGGGCACTGTATGTGTCTACGATACCCCACCATCCCTGCTTGCTGTTATACAACCACC CGTAATATCACCTCATCTCATCCCCCCACCACCACATTCGCTGCACTCCCCTTATCTGCA GGTTCCTACTTTTATCCGGTTATTGACTGCGCGGGGTCATCCACACCTATAGACCTTCCT TCGGATAATCTGTTAGTGCGGATAGATCTTCGGTGCATGTGAGACGCCCCGGGTATTGGA GGTGGTGGGTGGTATTATAACTTGTTGCACTAGTGTGCAATTCGGCAATGGGTGTGAGAT GGTACAGAGAAGGAGTGGGAAAATGTGTTGTTTGGGGGGCACAATTTCCAATGTTTGCCA CTACCGTAAACCCCCCCTCTACCCCTCCTCACGAGACACTTGCTCCTCCACTACGATGAA CCCTAACAGCCGATAACTTTGCGCCGTTTGGTACCCCTCCGGTAAGACGCGGAGACTGAT TGTGCACCGCGATAATCTTAATGTGCATTTTGGACCTTTTTTTTTTTTCAGAGCGTATGC GACACAAATAAGAATCTCCAATATATATAGAAGATGGGCTCGACCTAGAATTTTCTCTCT CTACACAATTTTGACACACAAACAAATAACCACCAACAACATGTCACCTTCCGTCGAAGT CACCCCTGCACACACACCCACCTCGTACGAGGTGACCAACTCGCTAGACAGCTATCGGGG CTATGACCACGTCCACTGGTACGTTGGTAATGCCAAGCAGGCCGCCTCCTTCTACATCAC CCGAATGGGATTCTCTCCCATCGCCTACAAGGGTCTTGAGACTGGCTCTCGAGACGTGAC CACCCATGTCGTGGGCAACGGCCAGGTCAGATTTGCATTCTCGTCTGCCCTGAGAACCGG AGAGCCCCAAGCCGACGAGATCCACGCCCATCTGGTCAAGCACGGTGACGCCGTCAAGGA TGTGGCCTTTGAGGTCGACAATGTGGAGCAGCTTTTCTCTGCTGCTGTCAAGAAGGGCGT CCGAGTGATTTCCGAGCCCAAGGTGCTCAAGGACGCACATGGCTCCGTCACCTACGCCGT CATCTCTACCTACGGAGATACCACTCACACTCTGATTGAGCGAGGCAGCTACGAGGGCGC CTTTCTTCCCGGATTTGTCGACACCTCCGCCAACAAGGACCCCATCGCGGCCTTCCTGCC CAACATTGAGCTCATGCACATCGACCACTGCGTTGGAAACCAGGATTGGAACGAGATGGA TAACGCATGCAAGTACTACGAGGAGACTCTGGGCTTCCACCGGTTCTGGTCGGTCGACGA TAAGGACATTTGCACCGAGTTCTCTGCTCTCAAGTCCGTGGTCATGGCCTCACCCAACGA GAAGATCAAGATGCCCGTCAACGAGCCGGCCGTGGGCAAGAAAAAGTCCCAGATTGAGGA GTACATTGACTTTTACGACGGCCCCGGTATCCAGCACATTGCTCTGCGGACCGACTGTAT CCTGGACACCGTCCGAGATCTGCGGGCTCGTGGCGTGGAGTTCATTTCGGTCCCTGGATC TTACTACGAGAACATGAAGGAGCGGCTGGCAAAGTCATCTCTGAAGCTCGAGGAGAAGTT TGAGGATATCCAGGCGCTCAACATTCTGATTGATTTCGACGAGGGCGGATATCTGCTGCA GCTGTTCACCAAGCCTTTGATGGACCGGCCCACCGTGTTCATTGAGATCATCCAGCGACG AAACTTTGAGGGTTTTGGCGCCGGCAACTTCAAGTCTCTGTTTGAGGCCATTGAGCGGGA GCAGGCCAAGCGAGGCAACCTTTAGTCATCTCTAGAGACGAGGCGTGCAATTTCAATTAA CCTGGCCAAGCAATACACAGATAAATATGAGCAAACTTGTATACTACGTGGTATTCCAGG TAGCAGTAGGTACTTGTAGTACATACCTGTAGATCATCATAAAGCTGATACGCGCCACGC TCGCCACACCCGCCGCATGAAACTGCGTTTGTAAAGCGCGCTCATTGTGCCAAGTGCCGG AAGAGAATTCTCCGGAGAATGGGCAGATTATCGGGTTGGAGTTGCTCCATTGAAGTTTTA GCCGAGGAAGGGGACCAGGCTAATT
Coding sequence
>YALI0B21846g.cds ATGTCACCTTCCGTCGAAGTCACCCCTGCACACACACCCACCTCGTACGAGGTGACCAAC TCGCTAGACAGCTATCGGGGCTATGACCACGTCCACTGGTACGTTGGTAATGCCAAGCAG GCCGCCTCCTTCTACATCACCCGAATGGGATTCTCTCCCATCGCCTACAAGGGTCTTGAG ACTGGCTCTCGAGACGTGACCACCCATGTCGTGGGCAACGGCCAGGTCAGATTTGCATTC TCGTCTGCCCTGAGAACCGGAGAGCCCCAAGCCGACGAGATCCACGCCCATCTGGTCAAG CACGGTGACGCCGTCAAGGATGTGGCCTTTGAGGTCGACAATGTGGAGCAGCTTTTCTCT GCTGCTGTCAAGAAGGGCGTCCGAGTGATTTCCGAGCCCAAGGTGCTCAAGGACGCACAT GGCTCCGTCACCTACGCCGTCATCTCTACCTACGGAGATACCACTCACACTCTGATTGAG CGAGGCAGCTACGAGGGCGCCTTTCTTCCCGGATTTGTCGACACCTCCGCCAACAAGGAC CCCATCGCGGCCTTCCTGCCCAACATTGAGCTCATGCACATCGACCACTGCGTTGGAAAC CAGGATTGGAACGAGATGGATAACGCATGCAAGTACTACGAGGAGACTCTGGGCTTCCAC CGGTTCTGGTCGGTCGACGATAAGGACATTTGCACCGAGTTCTCTGCTCTCAAGTCCGTG GTCATGGCCTCACCCAACGAGAAGATCAAGATGCCCGTCAACGAGCCGGCCGTGGGCAAG AAAAAGTCCCAGATTGAGGAGTACATTGACTTTTACGACGGCCCCGGTATCCAGCACATT GCTCTGCGGACCGACTGTATCCTGGACACCGTCCGAGATCTGCGGGCTCGTGGCGTGGAG TTCATTTCGGTCCCTGGATCTTACTACGAGAACATGAAGGAGCGGCTGGCAAAGTCATCT CTGAAGCTCGAGGAGAAGTTTGAGGATATCCAGGCGCTCAACATTCTGATTGATTTCGAC GAGGGCGGATATCTGCTGCAGCTGTTCACCAAGCCTTTGATGGACCGGCCCACCGTGTTC ATTGAGATCATCCAGCGACGAAACTTTGAGGGTTTTGGCGCCGGCAACTTCAAGTCTCTG TTTGAGGCCATTGAGCGGGAGCAGGCCAAGCGAGGCAACCTTTAG
Predicted translation product
>YALI0B21846g.aa MSPSVEVTPAHTPTSYEVTNSLDSYRGYDHVHWYVGNAKQAASFYITRMGFSPIAYKGLE TGSRDVTTHVVGNGQVRFAFSSALRTGEPQADEIHAHLVKHGDAVKDVAFEVDNVEQLFS AAVKKGVRVISEPKVLKDAHGSVTYAVISTYGDTTHTLIERGSYEGAFLPGFVDTSANKD PIAAFLPNIELMHIDHCVGNQDWNEMDNACKYYEETLGFHRFWSVDDKDICTEFSALKSV VMASPNEKIKMPVNEPAVGKKKSQIEEYIDFYDGPGIQHIALRTDCILDTVRDLRARGVE FISVPGSYYENMKERLAKSSLKLEEKFEDIQALNILIDFDEGGYLLQLFTKPLMDRPTVF IEIIQRRNFEGFGAGNFKSLFEAIEREQAKRGNL*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0B21846p