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Element type: CDS
Element length: 825 nucleotides,
on sense strand of
Yali0B: join(1957298..1957399,1957460..1958122).
Other names:
YALI-CDS5223.1
YALI-IPF8022
Coding sequence: 255 codons.
Element length: 825 nucleotides,
on sense strand of
Yali0B: join(1957298..1957399,1957460..1958122).
Other names:
YALI-CDS5223.1
YALI-IPF8022
Coding sequence: 255 codons.
Database cross references:
EMBL: CR382128
GeneID: 2907219
GenomeReviews: CR382128_GR
HOGENOM: HBG397986
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382128
GeneID: 2907219
GenomeReviews: CR382128_GR
HOGENOM: HBG397986
Homologs and Orthologs
Homologs in protein family: GL3R2159Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0B14729p 
similar to uniprot|Q9C0W1 Schizosaccharomyces pombe Hypothetical 26.3 kDa protein; SubName: Full=YALI0B14729p;
Protein domain map
Database cross references:
InterPro: IPR006083
KEGG: yli:YALI0B14729g
Pfam: PF00485
RefSeq: XP_500897.2
UniProtKB/TrEMBL: Q6CEL5
UniProtKB: Q6CEL5_YARLI
InterPro: IPR006083
KEGG: yli:YALI0B14729g
Pfam: PF00485
RefSeq: XP_500897.2
UniProtKB/TrEMBL: Q6CEL5
UniProtKB: Q6CEL5_YARLI
Computed results for YALI0B14729p
None available yet
Gene Ontology terms
Sequence data
>YALI0B14729g.nt ATGATCCGACGAAAAATAGCTGAGAAAAAACTGGCCAAGGAGGAGGATAAGCGCGAGGTC ACTTTGGTGGCACTCAGTGGCCCCTCGTCCAGTGGAAAGAGTgtgagtatgaatcgtttg cacgaggtgcagtccccgttacagaactggcactaacttcagACTCTAGCTCGTCTGCTT CGAGACATTCTTCCCCACGTCATCATCATCCACCAAGACGACTTTTACCTGGAGGACTCG CAGATCCCAGTTATTGATGGAGTTCAAGATTGGGATTGTCCCGAGGCTTTTGATTTCAAG CTACTGTCCAAGGTTTTGAGCCATGTCAAGCAGACTGGAGAGCTGCCCAAAAATTTCAAA TCGAAGGAGGACCAGAACTCCCTGGGACCCGCTGCTCTTGATGAAAACGCTGTCGACGCC TTTAAGCGTCGAATGCACCCTTACATGCCTGAGTTTGAGAACAAGCTGATTGTCATTCTG GATGGTATCATGGTCTACCATGACGCTCAATTCACCGAGTTGTTCGATATCAAGATTCTG GTCAGATCCAGTTACGAAAACCTCAAGTCTCGACGAGAAGCTCGATCCGGATACGTCACT CTGGAAGGGTTTTGGAAGGATCCTGAGGGATACTTCCACAACATTGTTTGGCCCGGTTAC CTAAAGACCCACAAACAGCTGTTTGAAAACGAAAATCCCAACGGAGAACCCAGTAAGGAC GCCACCAGAGAAGGAATCCGAATCGTGCCCACCACCGATTTCGACGTGGCCGAGACTCTT GATTGGGTGTTTGATGTCATTCTGGACTATTACGATCTTGAGTAA
>YALI0B14729g.cds ATGATCCGACGAAAAATAGCTGAGAAAAAACTGGCCAAGGAGGAGGATAAGCGCGAGGTC ACTTTGGTGGCACTCAGTGGCCCCTCGTCCAGTGGAAAGAGTACTCTAGCTCGTCTGCTT CGAGACATTCTTCCCCACGTCATCATCATCCACCAAGACGACTTTTACCTGGAGGACTCG CAGATCCCAGTTATTGATGGAGTTCAAGATTGGGATTGTCCCGAGGCTTTTGATTTCAAG CTACTGTCCAAGGTTTTGAGCCATGTCAAGCAGACTGGAGAGCTGCCCAAAAATTTCAAA TCGAAGGAGGACCAGAACTCCCTGGGACCCGCTGCTCTTGATGAAAACGCTGTCGACGCC TTTAAGCGTCGAATGCACCCTTACATGCCTGAGTTTGAGAACAAGCTGATTGTCATTCTG GATGGTATCATGGTCTACCATGACGCTCAATTCACCGAGTTGTTCGATATCAAGATTCTG GTCAGATCCAGTTACGAAAACCTCAAGTCTCGACGAGAAGCTCGATCCGGATACGTCACT CTGGAAGGGTTTTGGAAGGATCCTGAGGGATACTTCCACAACATTGTTTGGCCCGGTTAC CTAAAGACCCACAAACAGCTGTTTGAAAACGAAAATCCCAACGGAGAACCCAGTAAGGAC GCCACCAGAGAAGGAATCCGAATCGTGCCCACCACCGATTTCGACGTGGCCGAGACTCTT GATTGGGTGTTTGATGTCATTCTGGACTATTACGATCTTGAGTAA
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://192.168.122.177/elt/YALI/YALI0B14729g