YALI0B14729g


similar to uniprot|Q9C0W1 Schizosaccharomyces pombe Hypothetical 26.3 kDa protein

Genomic environment map

Element type: CDS
Element length: 825 nucleotides,
on sense strand of
Yali0B: join(1957298..1957399,1957460..1958122).
Other names:
YALI-CDS5223.1
YALI-IPF8022
Coding sequence: 255 codons.
Database cross references:
EMBL: CR382128
GeneID: 2907219
GenomeReviews: CR382128_GR
HOGENOM: HBG397986

Computed results  

None available yet


Homologs and Orthologs

Homologs in protein family: GL3R2159
Orthologs: strict determination not possible; homologs must be refined manually

Protein YALI0B14729p  


similar to uniprot|Q9C0W1 Schizosaccharomyces pombe Hypothetical 26.3 kDa protein; SubName: Full=YALI0B14729p;

Protein domain map

Protein length: 254 amino acids
Protein family: GL3R2159
Database cross references:
InterPro: IPR006083
KEGG: yli:YALI0B14729g
Pfam: PF00485
RefSeq: XP_500897.2
UniProtKB/TrEMBL: Q6CEL5
UniProtKB: Q6CEL5_YARLI

Computed results for YALI0B14729p  

None available yet

Gene Ontology terms  


Sequence data  


Nucleotide sequence    

>YALI0B14729g.nt
ATGATCCGACGAAAAATAGCTGAGAAAAAACTGGCCAAGGAGGAGGATAAGCGCGAGGTC
ACTTTGGTGGCACTCAGTGGCCCCTCGTCCAGTGGAAAGAGTgtgagtatgaatcgtttg
cacgaggtgcagtccccgttacagaactggcactaacttcagACTCTAGCTCGTCTGCTT
CGAGACATTCTTCCCCACGTCATCATCATCCACCAAGACGACTTTTACCTGGAGGACTCG
CAGATCCCAGTTATTGATGGAGTTCAAGATTGGGATTGTCCCGAGGCTTTTGATTTCAAG
CTACTGTCCAAGGTTTTGAGCCATGTCAAGCAGACTGGAGAGCTGCCCAAAAATTTCAAA
TCGAAGGAGGACCAGAACTCCCTGGGACCCGCTGCTCTTGATGAAAACGCTGTCGACGCC
TTTAAGCGTCGAATGCACCCTTACATGCCTGAGTTTGAGAACAAGCTGATTGTCATTCTG
GATGGTATCATGGTCTACCATGACGCTCAATTCACCGAGTTGTTCGATATCAAGATTCTG
GTCAGATCCAGTTACGAAAACCTCAAGTCTCGACGAGAAGCTCGATCCGGATACGTCACT
CTGGAAGGGTTTTGGAAGGATCCTGAGGGATACTTCCACAACATTGTTTGGCCCGGTTAC
CTAAAGACCCACAAACAGCTGTTTGAAAACGAAAATCCCAACGGAGAACCCAGTAAGGAC
GCCACCAGAGAAGGAATCCGAATCGTGCCCACCACCGATTTCGACGTGGCCGAGACTCTT
GATTGGGTGTTTGATGTCATTCTGGACTATTACGATCTTGAGTAA

Coding sequence    

>YALI0B14729g.cds
ATGATCCGACGAAAAATAGCTGAGAAAAAACTGGCCAAGGAGGAGGATAAGCGCGAGGTC
ACTTTGGTGGCACTCAGTGGCCCCTCGTCCAGTGGAAAGAGTACTCTAGCTCGTCTGCTT
CGAGACATTCTTCCCCACGTCATCATCATCCACCAAGACGACTTTTACCTGGAGGACTCG
CAGATCCCAGTTATTGATGGAGTTCAAGATTGGGATTGTCCCGAGGCTTTTGATTTCAAG
CTACTGTCCAAGGTTTTGAGCCATGTCAAGCAGACTGGAGAGCTGCCCAAAAATTTCAAA
TCGAAGGAGGACCAGAACTCCCTGGGACCCGCTGCTCTTGATGAAAACGCTGTCGACGCC
TTTAAGCGTCGAATGCACCCTTACATGCCTGAGTTTGAGAACAAGCTGATTGTCATTCTG
GATGGTATCATGGTCTACCATGACGCTCAATTCACCGAGTTGTTCGATATCAAGATTCTG
GTCAGATCCAGTTACGAAAACCTCAAGTCTCGACGAGAAGCTCGATCCGGATACGTCACT
CTGGAAGGGTTTTGGAAGGATCCTGAGGGATACTTCCACAACATTGTTTGGCCCGGTTAC
CTAAAGACCCACAAACAGCTGTTTGAAAACGAAAATCCCAACGGAGAACCCAGTAAGGAC
GCCACCAGAGAAGGAATCCGAATCGTGCCCACCACCGATTTCGACGTGGCCGAGACTCTT
GATTGGGTGTTTGATGTCATTCTGGACTATTACGATCTTGAGTAA

Predicted translation product    

>YALI0B14729g.aa
MIRRKIAEKKLAKEEDKREVTLVALSGPSSSGKSTLARLLRDILPHVIIIHQDDFYLEDS
QIPVIDGVQDWDCPEAFDFKLLSKVLSHVKQTGELPKNFKSKEDQNSLGPAALDENAVDA
FKRRMHPYMPEFENKLIVILDGIMVYHDAQFTELFDIKILVRSSYENLKSRREARSGYVT
LEGFWKDPEGYFHNIVWPGYLKTHKQLFENENPNGEPSKDATREGIRIVPTTDFDVAETL
DWVFDVILDYYDLE*




Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites