HomeYALI0B06941g
similar to uniprot|Q12189 Saccharomyces cerevisiae YOR095c RKI1 Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway
Element type: CDS
Element length: 732 nucleotides,
on anti-sense strand of
Yali0B: complement(924487..925218).
Other names:
YALI-CDS4983.1
YALI-IPF8761
Coding sequence: 244 codons.
Element length: 732 nucleotides,
on anti-sense strand of
Yali0B: complement(924487..925218).
Other names:
YALI-CDS4983.1
YALI-IPF8761
Coding sequence: 244 codons.
Database cross references:
EMBL: CR382128
GeneID: 2906709
HOGENOM: Q6CFH4
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382128
GeneID: 2906709
HOGENOM: Q6CFH4
Homologs and Orthologs
Homologs in protein families: GL3R2152 GL3R2152.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0B06941p 
similar to uniprot|Q12189 Saccharomyces cerevisiae YOR095c RKI1 D-ribose-5-phosphate ketol-isomerase
Protein domain map
Database cross references:
InterPro: IPR004788
KEGG: yli:YALI0B06941g
PANTHER: PTHR11934
Pfam: PF06026
ProDom: PD005813
RefSeq: XP_500588.1
TIGRFAMs: TIGR00021
UniProtKB/Swiss-Prot: Q6CFH4
UniprotKB: RPIA_YARLI
InterPro: IPR004788
KEGG: yli:YALI0B06941g
PANTHER: PTHR11934
Pfam: PF06026
ProDom: PD005813
RefSeq: XP_500588.1
TIGRFAMs: TIGR00021
UniProtKB/Swiss-Prot: Q6CFH4
UniprotKB: RPIA_YARLI
Gene Ontology terms
None available yet
Sequence data
>YALI0B06941g.nt ACTCTGACGGTATGGTGCAACCCCACATTAGACTCAACCGAACGCTTAGCGAGATATTGA GCATTGTTGACTGAGACAAGAGAGACAGGCAAGGGAGGCGCAAAAATATGTCGAATGATT GAAAAATTGCCCAGTGGGGCAATTGGTACTCAGCGGAGTAAGTTTTTACCCAGAATCCAT TGGAATATCCGTGATTTGAATGGTTTGAAGATGTGGATCTGGATGCTCAGGCTATTTGTT ATATGAGATAGTACGAATACGACTCTAAGTTGACTATAAGTACGACTATCGCTGAAAAAA TTACACCATTGGATTTGTCTGGCTGAGAGCTCTCTAATGGTGTGTTTATTTTTCACACAA CTTGGATATTTCGGCCAATAACCGATGGCCATGGATAATTATAGTAGGTACAACTAATTA GCGGTTATTGTACAGAAAACAAAGAAACTAAGCATCTAAGGTCTCCCAAACACTTGTATT AGGTCAGCAGAAGAGCTTCTACGATGACCACGATGTCAACCTCTCAATCATGTCAACCTC TCAGTCAACTCAGCACCTATCCTCCTTCCATTTTTCCCATTTTCATCATTTTTTCATTTC CGAGAGTATCCGAAAATTTGTCATGCATATTGCTCCTGTTTTTCCCGCCGCAGCCATGCC TTTGGCGAATGGACTACTTTCCGCCCCGTATCTTAGTAATCACCCGTTGTGTCGTCTTAG TCATCCAGCAACTGAGAGATATAATTGAAAAGCCACACGCCGTTGCGCAAATTCAATCGC CTCAACTCTACTGATCTGATTACTAACCCCCCCGTCTCTCGCACCCTCTATGAACATGCA CCCTGCAAGCCAACCTTAAAAATGCACAGTAACTGTCAACCTGCATATACTGCCCACTAT CTCCAACCAACCTTTCAAAGTGTTTTCCCGGCTTCTTTTGCGACCGTTCCACCGACTCCA CTTCACGCCCCCAGCTCTACGAAGCGCCAACATACACACAATGTCCTCCGAACTGCCTCC TCTTGAGCAGGCCAAGCGAATCGCCGCCCACCAGGCCGTGGAGCAACACTACCCCAAGGA CGCCAAGGTCGTGGGCATTGGCTCAGGATCCACCGTGGTCTACGTTGCCGAGAAGATTGC GTCGTTGCCCAAGGAGCTCACCAAGGACACCGTGTTCATTTCTACGGGTTTCCAGAGCAA GCAGCTGATCCAGAACGCCGGGTTGCGACTGGGATGCATCGACCAGTACTCCAACGGAGA TCTGGACGTGGCGTTTGACGGCGCCGACGAGACCGACCCTCAGCTCAACTGCATCAAGGG CGGAGGAGCATGCCTCTTCCAGGAAAAGATTGTCGCCGAGTGTGCCCGCAAGTTTGTCGT GGTGGCCGACTACCGAAAACAGTCCAAGGCTCTGGGCACCGTGTGGATCCAGGGTATCCC CATTGAGGTGGTGCCCGACGCCTACAACAAGGTAATTGCTGATCTCAAGAAGATGGGCGC CCAGTCCGCGGTGCTGCGACCCGGCTCTCCCGGAAAGGCGGGCCCCATCATCACCGACAA TGGCAACTTCATTGTCGACGCCTACTTTGGCGAGATCCAACCCGACGCCGTCAAGGACCT GCACATCAAGATCAAGCTGCTGTTGGGCGTCGTTGAGACCGGCCTCTTCACTAACGCGGA CGTAGCGTACTTTGGAAACGCCGACGGAACCATCTCCACCATTACCAAGTAACTGAAACA TAGCAATTGATAGACAAGATTTCGTACACACATTCCACATTCTATGGACACCCCCGCTGT TCAACACCATCTTTTTATTCAAATTATTCAGCACTTAGCAGCAACTCATTTTTTTTCTCA GTTGCGTCTCCGAACCATCTTCCCATGCATGGCAATAATGAGCAGTCTGGTGGGGAGACG ACCATCGTCGCTAGAGAAAGCCACAGCCCGCTTTTTTCTGTCCAACTTTCCACGTGTAGG CACACTAGCAGACCGTTTGAGGGCATACGGCGGCTTAACATACTCATACCCG
>YALI0B06941g.cds ATGTCCTCCGAACTGCCTCCTCTTGAGCAGGCCAAGCGAATCGCCGCCCACCAGGCCGTG GAGCAACACTACCCCAAGGACGCCAAGGTCGTGGGCATTGGCTCAGGATCCACCGTGGTC TACGTTGCCGAGAAGATTGCGTCGTTGCCCAAGGAGCTCACCAAGGACACCGTGTTCATT TCTACGGGTTTCCAGAGCAAGCAGCTGATCCAGAACGCCGGGTTGCGACTGGGATGCATC GACCAGTACTCCAACGGAGATCTGGACGTGGCGTTTGACGGCGCCGACGAGACCGACCCT CAGCTCAACTGCATCAAGGGCGGAGGAGCATGCCTCTTCCAGGAAAAGATTGTCGCCGAG TGTGCCCGCAAGTTTGTCGTGGTGGCCGACTACCGAAAACAGTCCAAGGCTCTGGGCACC GTGTGGATCCAGGGTATCCCCATTGAGGTGGTGCCCGACGCCTACAACAAGGTAATTGCT GATCTCAAGAAGATGGGCGCCCAGTCCGCGGTGCTGCGACCCGGCTCTCCCGGAAAGGCG GGCCCCATCATCACCGACAATGGCAACTTCATTGTCGACGCCTACTTTGGCGAGATCCAA CCCGACGCCGTCAAGGACCTGCACATCAAGATCAAGCTGCTGTTGGGCGTCGTTGAGACC GGCCTCTTCACTAACGCGGACGTAGCGTACTTTGGAAACGCCGACGGAACCATCTCCACC ATTACCAAGTAA
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0B06941p