HomeYALI0A18568g
weakly similar to uniprot|Q02770 Saccharomyces cerevisiae YPL064c CWC27 Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing
Element type: CDS
Element length: 1071 nucleotides,
on sense strand of
Yali0A: 1990632..1991702.
Other names:
YALI-CDS3727.1
YALI-IPF10623
Coding sequence: 357 codons.
Element length: 1071 nucleotides,
on sense strand of
Yali0A: 1990632..1991702.
Other names:
YALI-CDS3727.1
YALI-IPF10623
Coding sequence: 357 codons.
Database cross references:
EMBL: CR382127
GeneID: 2905736
HOGENOM: Q6CGK4
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR382127
GeneID: 2905736
HOGENOM: Q6CGK4
Homologs and Orthologs
Homologs in protein families: GL3R3437 GL3R3437.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein YALI0A18568p 
weakly similar to uniprot|Q02770 Saccharomyces cerevisiae YPL064c CWC27 putative peptidyl-prolyl cis- trans isomerase
Protein domain map
Database cross references:
Gene3D: G3DSA:2.40.100.10
InterPro: IPR002130
KEGG: yli:YALI0A18568g
PANTHER: PTHR11071
PROSITE: PS00170
PROSITE: PS50072
Pfam: PF00160
RefSeq: XP_500208.1
UniProtKB/Swiss-Prot: Q6CGK4
UniprotKB: CWC27_YARLI
Gene3D: G3DSA:2.40.100.10
InterPro: IPR002130
KEGG: yli:YALI0A18568g
PANTHER: PTHR11071
PROSITE: PS00170
PROSITE: PS50072
Pfam: PF00160
RefSeq: XP_500208.1
UniProtKB/Swiss-Prot: Q6CGK4
UniprotKB: CWC27_YARLI
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>YALI0A18568g.nt TATTTCTTCATCATAACAAACACAATCCAAGACTTCGCTATCACGCTACAGTACCACCCT ACACCGCTACAATGGACTGGAAACTGCAGATCCAGCAGCTCGCGAGCCGACTAGTCAAGT GGGTGACCAACACCCAGCCCGTGATTCCCAAAAACGTTACCCAAAGAACGATAGATACCC AAACCGATACCAACACGTCCACCACTACCAATGCTTCTGAGACCAACATACCAAATGCTC CCGAGGCGGCCGAGGACGAAACCGAGTCCAGACCCCAGTCGTATGGTTCTGTGTCAACCC AAGACTCGTATCCAGTGATTCCGCTCGTGCGACACTCGACTACAAGAGAACATGTTGTTT CACGAGTGGTTTTGGTCGGCGCAGAGGAGTTGTTTGATGAGGGGGTTGAGAGAGTTGTGT GAGGTGTCAAGTGTCAAGTGCGAGGCACATGTGGATGATTATTGCCACTCTGTCCACTTT CCAGACTCACACTCAGTCCCTGACTGGCTCTTTTGATCTGGCTCCCGACCAAACTGGAAC AGTGAAGTATCAACATGTCACTAAAAGCTGTTGGAATGATAGTTGATGGCCACGAAAAAG CCTCTGATACCTATATATGCCCCAATTTCAGTTAACAAATGAGTTCTAGCAGCCCCTATA CATCTCATCGTCCCCACCAAATACGTCTCATCGTAACGTAGCCCCAAAAACATCACCTAA ATCACTTAATATAGATGCCATATACTTGAAAAATATCCTACTTCATCCCCAACCCTCCAC TAACAACTACCTCATGACAATTAAGCCAATTAATCACTATCATCACTACACCGCCCACAA TACCCCGTCCCAGATGTCCTCAACAAACTCTTAATAACCTCCTCAGTCACTTCAACTAAT CTCCCAACTACCCTGAGTTACCCTACCTATTATTAGACACATGTCTCATGCACGTCTTTT CCACCTCCAAAGCTGCCATCACCACTTTTACATCACCACCATGGAGCCCCAAACGACCGC CAAGGTGGTGCTGACGACCACTAAAGGCCCCATTGAGGCGGAATTATTTGCCAAAGAGGT GCCGCTGGCTTGTACACGCTTCCTGCAGCTCTGCAAGTCCGGATACTACGACTCAAAGCC GTTCTACCGAGTGCTGCCGGGAGAACTGATCCAATGTGGCCAACAGGAGGCTGGAAACAA CACAAACAGCTACCCTAAGCTTAAAGACGAACCACATACCCGAATCAAACTCAAACGAGG CTACTTGGCCATGGCTAGCGAATACACCGAGAACAACCGACGGGTCCCCAATTCTGCCAC CACGGAGTTCTTTATTGCTCTCAAAGAAATCCCCTTCAGCGGAACTGTGATTGGAAAAAT CACCGGAGACACTATTTACAACGCCCAAGATATCGCTCGAGGAGAATTGACCGAAGATGG ATACCCGATGTACGTTCAAACGGTGCAGAACGTGGAGATAGTGCTGGGAGGAGGGCTGGT GCAAGAGACACAAAAGGCGGGCGCCGACGCGGGCGCCGACGCGGAGTCACGTGAAAACAA GTCTGGTTCACGTGATAGACCGAAGAAGCCAAAACGAAAGCTTCAGGTGAACCATGACGA TGACGACGATGAGGAGCCTGTTTTTACGAAAAAGAGTGTCTCCAAGCTGGTTGAAGACAA GTTCAAGAAGGACAACACCAACGTCGCAAAGAAGCCCAAGGTGGAGGCGTCCGCGGAACA ACCGGAACCTGCTGCCGTTCAAGCAACCACCACCCATCACGTGCAAGATGCAGAAGACAT GACCACAGAAGTTGACACTGTTGTTTCAGAACGGCTGGAAAAGTTCAGAAACATGTCACG TACTAAGCCAGACACAAAGCCCAAGTCCATGTTAATTTCCCAAGAAGACAGAATCAGACG ACGACTAGGACTAGGTCCCGATGAAGATATTCCTTCGGATGCCTCGGACCCTTCGTCAGA TGAAGATGACGATTTTGACATTTTCAAACACAAATTCATTTGTCCAGAGGACGACAAGGC CGAGGACTCGTTGATTACTTTGGGAGCATGACCGTGAACTTGACCCATTCGTACATATTA TATATTTATTTTAAAGAAGGGATGTAGAATGTGAGCGCACAGTCAGTCTGTCATTCGGCT CACAACACTTTTTCATCAATCTAATCAACAGCCAAACTACTCGGGCCTGGTCCGTCTCTT TCCTATTATACTATACAAATCTGTTTGTACATACGTACCGTCTTGTATGCCTCCTTGCAT CTCTCTATCTTCTTCCTCATCACCACAAACACTACTCTAACGTAGTTTTACCTTGTGGTG ATATCTGAATGAGGGGGGGGGGGGGGGGGGG
Coding sequence
>YALI0A18568g.cds ATGGAGCCCCAAACGACCGCCAAGGTGGTGCTGACGACCACTAAAGGCCCCATTGAGGCG GAATTATTTGCCAAAGAGGTGCCGCTGGCTTGTACACGCTTCCTGCAGCTCTGCAAGTCC GGATACTACGACTCAAAGCCGTTCTACCGAGTGCTGCCGGGAGAACTGATCCAATGTGGC CAACAGGAGGCTGGAAACAACACAAACAGCTACCCTAAGCTTAAAGACGAACCACATACC CGAATCAAACTCAAACGAGGCTACTTGGCCATGGCTAGCGAATACACCGAGAACAACCGA CGGGTCCCCAATTCTGCCACCACGGAGTTCTTTATTGCTCTCAAAGAAATCCCCTTCAGC GGAACTGTGATTGGAAAAATCACCGGAGACACTATTTACAACGCCCAAGATATCGCTCGA GGAGAATTGACCGAAGATGGATACCCGATGTACGTTCAAACGGTGCAGAACGTGGAGATA GTGCTGGGAGGAGGGCTGGTGCAAGAGACACAAAAGGCGGGCGCCGACGCGGGCGCCGAC GCGGAGTCACGTGAAAACAAGTCTGGTTCACGTGATAGACCGAAGAAGCCAAAACGAAAG CTTCAGGTGAACCATGACGATGACGACGATGAGGAGCCTGTTTTTACGAAAAAGAGTGTC TCCAAGCTGGTTGAAGACAAGTTCAAGAAGGACAACACCAACGTCGCAAAGAAGCCCAAG GTGGAGGCGTCCGCGGAACAACCGGAACCTGCTGCCGTTCAAGCAACCACCACCCATCAC GTGCAAGATGCAGAAGACATGACCACAGAAGTTGACACTGTTGTTTCAGAACGGCTGGAA AAGTTCAGAAACATGTCACGTACTAAGCCAGACACAAAGCCCAAGTCCATGTTAATTTCC CAAGAAGACAGAATCAGACGACGACTAGGACTAGGTCCCGATGAAGATATTCCTTCGGAT GCCTCGGACCCTTCGTCAGATGAAGATGACGATTTTGACATTTTCAAACACAAATTCATT TGTCCAGAGGACGACAAGGCCGAGGACTCGTTGATTACTTTGGGAGCATGA
Predicted translation product
>YALI0A18568g.aa MEPQTTAKVVLTTTKGPIEAELFAKEVPLACTRFLQLCKSGYYDSKPFYRVLPGELIQCG QQEAGNNTNSYPKLKDEPHTRIKLKRGYLAMASEYTENNRRVPNSATTEFFIALKEIPFS GTVIGKITGDTIYNAQDIARGELTEDGYPMYVQTVQNVEIVLGGGLVQETQKAGADAGAD AESRENKSGSRDRPKKPKRKLQVNHDDDDDEEPVFTKKSVSKLVEDKFKKDNTNVAKKPK VEASAEQPEPAAVQATTTHHVQDAEDMTTEVDTVVSERLEKFRNMSRTKPDTKPKSMLIS QEDRIRRRLGLGPDEDIPSDASDPSSDEDDDFDIFKHKFICPEDDKAEDSLITLGA*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/YALI/YALI0A18568g