HomeSAKL0H19272g
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062W LCB2 Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1689 nucleotides,
on anti-sense strand of
Sakl0H: complement(1701420..1703108).
Other names:
SAKL-ORF728
Coding sequence: 563 codons.
Element length: 1689 nucleotides,
on anti-sense strand of
Sakl0H: complement(1701420..1703108).
Other names:
SAKL-ORF728
Coding sequence: 563 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.F3 GL3C0100.N1Orthologs by synteny: ZYRO0G09152g KLTH0H07920g KLLA0D02134g
Protein SAKL0H19272p 
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062W LCB2 Component of serine palmitoyltransferase responsible along with Lcb1p for the first committed step in sphingolipid synthesis which is the condensation of serine with palmitoyl-CoA to form 3- ketosphinganine
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>SAKL0H19272g.nt GGATGACGTCTCCTGAACTACATGCAATCTTTCTAAAGAACGCTGGTGAAAAATTGTCTG TTCGTGAATCTGTTGCAACCGGGTTTCGTGAGGGCTCCTCAAACAACTTTATTCCCTACT GGCACAAGCTGTCAAAAGATCAAAAGGAAATTGCGCACATGTACTTGGAATATTTTGGAC TGCAAGATGTAGCGGACTCTAAAAAATTCAATGCGTTGAGTACCAGCGAACAAAAGTTGG TACTTTTTGTTAGAAGTGTTGTCAAGATGCCGCAAGTTTTGATACTTGACGAAGCTTTTT CTGCAATGGAGACCGAACCAATGCTAAAATGCCATGAATTTTTGAACCATTGGCCTGGTA CTGTGCTAATAGTTTCCCACGTTGCGGAAGAAACACCAAAATGTAACCACTATCTACGTT TAGTAACACCAGGTGAGTATGAAGTTGGTGAATTGTAGATTTCGCACAGGCCATCGAGCA CTTTAGCATCCAAGTTTGTCTAACCACTACATTTATTGAGATGCACAGTGTGAAACTCTA GAAGGCCAAATCCACAATTCCATTTCCCCCTCTTTTGTTTCTGGAAGCTCGAGTTTCTTG CATTTAATGGAAAGTAAATATTTTAGTAGAACAATCCAACCTCAAAAATATAAAGACTAC GCCTATACTTACACATTGTCACAAGTACAATGTAACGCTTGTTGTGATTGCTTCTATGAT TACGTGCACTAGGATTTTATCTATTAGTGATCAGATTAACTTGTGCAAGCCCTGGTGCTT ATCTTTTTAAAAGAGTTTTCAGCTCAACGTTCATTGGTAATCCATCTGTTTCCAGCCTCG TGTAGGTCATTTCCGACGTAAGTCACGTTCTGTTGTTTTTCTTGTTTTTTTTTTTGTCAA TAGGGCAGCAATAGGAGAAGAGAAGCGGAATCCAACAACACAAAACACGACATTGAGAAG ATTCAGACATCAGTGTCGCAGAATTAAATAAACAAGAGCTATGAGTTCGGTTTCAAATAC AAAAGTGCCTCTTCTAGCTCCGGAGAATATCTCATTGGAAGACAAAAAGGAAAATGAGTT TGGTGCTCTAACTTCTACCGATTATTTGTACGAGGTTAAATCTCGTCACGGAAAGCCATT ACGGGATCCAATCCTGGATGCACCAGCTTATTACGTCTCGGTTATCACATATTTAAACTA TCTGATTTTATTGTTATTAGGCCATGCACACGACTTCTTAGGGATGAGATTTCAAAAGAC TAAACATGCTTACCTTATGGAAAAGGATGGATTTGCTCCGTGGTTCTCAAGTTTTGAAAG TTTCTTTATCAGAAGAATGAAACAAAGGATTGATGACTGTTTTTCGAGGCCAGCAACAGG TGTCCCGGGCAGATTCATTCGTGTACTTGACAGGGTATCTCATAATTTGAATGAATACTT CACTTACCCGGGCACCACATCAATGTGCTTGAATTTGTCTTCTTACAACTACCTAGGTTT CGCCCAAAGTGAAGGGCAATGTACTGATGCTGCATTAGAATGTGTTGATAAATATGGTAT TCATTCTGGTGGCTCGAGGACACAGATCGGCACTACTGATTTACACATTGCCGCCGAAGA GTACGTTGCTGGTTTTGTTGGTAAACCGGATGCTATTATTTTTTCGATGGGTTACGGTAC TAATGCTAATTTTTTCAATTCTATTTTGGACAGCAAATGCTTAGTTGTCTCCGATGAGTT CAATCATGCTTCTATTAGAACCGGTGTGAGGTTATCTGGTGCAGCCGTTAAAACCTTCAA GCATAATAATACGAAGGCACTAGAGAAACTAATCAGGGATCAAATTGTACAAGGCCAGCC AAAATCTCATCGTCCATGGAAGAAGATTTTGATTGCTGTTGAAGGTCTGTACTCTATGGA AGGTACCATGTGTAACCTGCCTGCGCTAATCGAATTGAAGAAAAAGTACAAATGCTATCT TTTTGTTGACGAGGCACATTCTATTGGTGCCATAGGTCCCAGTGGTCGTGGTGTGTGTGA TTACTTTGGTGTTGATCCGGCTGATGTTGATATTTTGATGGGTACTCTAACGAAGTCCTT TGGTGCTGCTGGTGGCTACATCGCTGCTGAGAAGCATATTATTGATAGACTAAGACTCGA CCTGACTACTGTCAATTACGGTGAATCTGCTCCGGCTCCCGTTTTAGGGCAAATCATCTC TTCTTTGAGGACAATTGCTGGTGAACTAAATCCAGGCGAAGGTAAGGAAAGATTGCAACG TATTGCCTATAACTCTCGTTACCTACGTTTAGCATTGCAAAGGTTGGGTTTTATTGTGTA CGGTATTGCAGACTCTCCAGTCATCCCAATGCTACTTTACGCTCCATCCAAAATGCCCGC CTTCTCCAGAATGATGCTGCAAAGAAAGATTGCAGTGGTCGTGGTTGCATACCCTGCTAC ACCCTTAATCGAATCGAGAGTCAGGTTTTGTGTCTCAGCAGCATTAACTAAGGAGGATAT CGATTATTTGTTACGTCACGTAAATGAGGTAGGTGAAAAACTATTTCTCAAGGTTAGTAC TGGTAAAGCAGGCGGTTCCCTGGACGGTAAGGCTCCAAGATGGGATATCGAAGAGGTTCT CAAAAGAACTCCCGAAGACTGCAAGGATGACAAGTATTTCCTAATATGAGAGAAGCTTAT ACTTATGCATTAAATGAAAAAAAAAAGAGAAAAAGAAAATGAAAAAGAAAAAAAAAAATA TTAACAGAATAAAGCACTTAATAGATCTTTGGCTCGGTTATTATCATTGGTTTTTTATTA TGTATATAGCCTGTTAGAAACTTCTTCTCGTCTATCTGTTCTCTTCTCGAGAATCACGTG ATTTACCTCTTCATTGTACTTTTTAATTCCGAGAAATGAAATTGCACAGACAACAAAAAC ATCATACATTAGGGTTAAACAAGCACAAGAAATGTCTAGCTTATACCAC
>SAKL0H19272g.cds ATGAGTTCGGTTTCAAATACAAAAGTGCCTCTTCTAGCTCCGGAGAATATCTCATTGGAA GACAAAAAGGAAAATGAGTTTGGTGCTCTAACTTCTACCGATTATTTGTACGAGGTTAAA TCTCGTCACGGAAAGCCATTACGGGATCCAATCCTGGATGCACCAGCTTATTACGTCTCG GTTATCACATATTTAAACTATCTGATTTTATTGTTATTAGGCCATGCACACGACTTCTTA GGGATGAGATTTCAAAAGACTAAACATGCTTACCTTATGGAAAAGGATGGATTTGCTCCG TGGTTCTCAAGTTTTGAAAGTTTCTTTATCAGAAGAATGAAACAAAGGATTGATGACTGT TTTTCGAGGCCAGCAACAGGTGTCCCGGGCAGATTCATTCGTGTACTTGACAGGGTATCT CATAATTTGAATGAATACTTCACTTACCCGGGCACCACATCAATGTGCTTGAATTTGTCT TCTTACAACTACCTAGGTTTCGCCCAAAGTGAAGGGCAATGTACTGATGCTGCATTAGAA TGTGTTGATAAATATGGTATTCATTCTGGTGGCTCGAGGACACAGATCGGCACTACTGAT TTACACATTGCCGCCGAAGAGTACGTTGCTGGTTTTGTTGGTAAACCGGATGCTATTATT TTTTCGATGGGTTACGGTACTAATGCTAATTTTTTCAATTCTATTTTGGACAGCAAATGC TTAGTTGTCTCCGATGAGTTCAATCATGCTTCTATTAGAACCGGTGTGAGGTTATCTGGT GCAGCCGTTAAAACCTTCAAGCATAATAATACGAAGGCACTAGAGAAACTAATCAGGGAT CAAATTGTACAAGGCCAGCCAAAATCTCATCGTCCATGGAAGAAGATTTTGATTGCTGTT GAAGGTCTGTACTCTATGGAAGGTACCATGTGTAACCTGCCTGCGCTAATCGAATTGAAG AAAAAGTACAAATGCTATCTTTTTGTTGACGAGGCACATTCTATTGGTGCCATAGGTCCC AGTGGTCGTGGTGTGTGTGATTACTTTGGTGTTGATCCGGCTGATGTTGATATTTTGATG GGTACTCTAACGAAGTCCTTTGGTGCTGCTGGTGGCTACATCGCTGCTGAGAAGCATATT ATTGATAGACTAAGACTCGACCTGACTACTGTCAATTACGGTGAATCTGCTCCGGCTCCC GTTTTAGGGCAAATCATCTCTTCTTTGAGGACAATTGCTGGTGAACTAAATCCAGGCGAA GGTAAGGAAAGATTGCAACGTATTGCCTATAACTCTCGTTACCTACGTTTAGCATTGCAA AGGTTGGGTTTTATTGTGTACGGTATTGCAGACTCTCCAGTCATCCCAATGCTACTTTAC GCTCCATCCAAAATGCCCGCCTTCTCCAGAATGATGCTGCAAAGAAAGATTGCAGTGGTC GTGGTTGCATACCCTGCTACACCCTTAATCGAATCGAGAGTCAGGTTTTGTGTCTCAGCA GCATTAACTAAGGAGGATATCGATTATTTGTTACGTCACGTAAATGAGGTAGGTGAAAAA CTATTTCTCAAGGTTAGTACTGGTAAAGCAGGCGGTTCCCTGGACGGTAAGGCTCCAAGA TGGGATATCGAAGAGGTTCTCAAAAGAACTCCCGAAGACTGCAAGGATGACAAGTATTTC CTAATATGA
>SAKL0H19272g.aa MSSVSNTKVPLLAPENISLEDKKENEFGALTSTDYLYEVKSRHGKPLRDPILDAPAYYVS VITYLNYLILLLLGHAHDFLGMRFQKTKHAYLMEKDGFAPWFSSFESFFIRRMKQRIDDC FSRPATGVPGRFIRVLDRVSHNLNEYFTYPGTTSMCLNLSSYNYLGFAQSEGQCTDAALE CVDKYGIHSGGSRTQIGTTDLHIAAEEYVAGFVGKPDAIIFSMGYGTNANFFNSILDSKC LVVSDEFNHASIRTGVRLSGAAVKTFKHNNTKALEKLIRDQIVQGQPKSHRPWKKILIAV EGLYSMEGTMCNLPALIELKKKYKCYLFVDEAHSIGAIGPSGRGVCDYFGVDPADVDILM GTLTKSFGAAGGYIAAEKHIIDRLRLDLTTVNYGESAPAPVLGQIISSLRTIAGELNPGE GKERLQRIAYNSRYLRLALQRLGFIVYGIADSPVIPMLLYAPSKMPAFSRMMLQRKIAVV VVAYPATPLIESRVRFCVSAALTKEDIDYLLRHVNEVGEKLFLKVSTGKAGGSLDGKAPR WDIEEVLKRTPEDCKDDKYFLI*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/SAKL/SAKL0H19272p