HomeSAKL0H10318g
some similarities with uniprot|Q02770 Saccharomyces cerevisiae YPL064C CWC27 Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing
Element type: CDS
Element length: 1002 nucleotides,
on sense strand of
Sakl0H: 882550..883551.
Other names:
SAKL-ORF1637
Coding sequence: 334 codons.
Element length: 1002 nucleotides,
on sense strand of
Sakl0H: 882550..883551.
Other names:
SAKL-ORF1637
Coding sequence: 334 codons.
Homologs and Orthologs
Homologs in protein families: GL3R3437.F1 GL3R3437.N1 GL3R3437Orthologs by synteny: ZYRO0F09152g KLTH0E12276g ERGO0D10384g
Protein SAKL0H10318p 
some similarities with uniprot|Q02770 Saccharomyces cerevisiae YPL064C
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>SAKL0H10318g.nt CCAAGTCTCTATTCAATTTAGACAAATCCTTTATGTGAACACCATCCTTGTACAAACAAT GTTCCTTGTATAGGTTGTAAGTGACAAACGCATGGATAGGATCCATTTTCTCAGCAACTT TTTCGGCGTACATCATGTAATTAGAGGAGAATAAGACAATTTCGTAGTACTGGGATAGGT AGCCTAGGAAATAGTCGGCACCAGGTCTCTTTGCAGTTCTCCAGCCGTATTGCTGGGACC ACTCAGAATGGATCAAGAAATCTTCCAAGGTTAGGACTAAAGTCAGTGGTCTCTGGTATG GAGGAGGCGGTGGAGGTGGTAACAAATCTGGGAATGGGGGTTCCTGGAAGTAGGTGAAAA TAGAGTTGAAACGGGCCTTGAATCTCTTGTACATCAACTCTGGAGTATAGCCATTATCAA TACCTTGTTTCAATTCTTCTGGCTCCTCAGATTCCCAGTCTCTTGACATGTACAAGCCAG TACCAGCTAAACCAGCAAAAGATAACACATAAAACCAATTCGCGTAGCGCTCTCTCTTGA TGTCTGTGGAGGATTGTCTCTTTCTTTTCTTCTTACCTGCAGAATCTTTGGAAGACTTGT CGTCTGTTTCATTGGCATCCTCTTCTAAATTTTTCTTGTTTGCTACTGGTTCTTCCATGT CTACACCTGCTTTAGCCAACATATCATCAGTTAGAATGGATTGTTGCTTTTGCTCACCTT CTTTTTTAGGAGCGTTTAATAGCACTCTGGAGTAGACTAAAGATCTCGTAGGGACGGTAT GAGGTACAGCGACCTTGAGTGAGGAAACAGCACATCTGGCGCTGAGCCTAGTAGGCTGTC TAAGTAAATTTAACATGAAGCTGTTTTATGCAATTTCTCTTGGATGTGCTTTTGCTACCC TATTGGCTTGCAACTGTTTTCTCACAAAGTGTTGGTTATGAAAAATTTTCAACGAATTTA TTACCCGGACATCAAGTAGAAAAGACTTTGAGATAGAGGTATGTTTACTCAAGGTTTAAA GAAGCTCATCGACAAAATGTCCACCGGCCTTGAACCCCAAACAAGCGCCAAATGTATAAT ATACACGTCCAAAGGCTTTTTAGAAGTGGAACTATGGGCTAAGGAATGTCATAGAACTGT CAAGAACTTTCTTCAAAACGCTATCGACGGTGCATTTAACGGTAAAACAATTGACAGGCT ATTATTTCAATCCGTGATCTGCAGTGAAGAACCCCAGGGAGGCTTAGACTTGCCATTAGA ATGTAACACTAGATTGAATTTTAATAGAAGAGGGCTGGTAGGACTGCTTCCTGATTCCAA AGGCTCCTTCTTTATCACTTTAAAGGAGACTCCTACTTTGAATAACAAGGCAACTGTATT TGGAAAAATAGTTGGTGGGTCAATTTATAATGTGGTCAGTATTTCAGAAGGTGAATTGAA ACCTGATGGTGAAAGTTTCCTTTACCCGGCAGTTATAGATCGAATCGAAATTACAATACC CTATTTTAATAATTTACTTCCCAAAAACACTGAAAACAAATCTGGGACAAAACCTTTGAA AAAGAAGTTAAAGAAGGCAACCAAGATAAAGATCAATTATGAGGAGGAGGAGGAGGAAAT TGAGCATGATATCATAGATATTAAGATCCGGCCTGCCCACGACATGCTTAACGATAACAA GCTGGTTCCTAGTTCGAGTAGCTTGCACAATGACAGTGGGAAAGTGGATGGAATACAGAC TAGCCAAGACAGTGATACAAGTATTTCAGAAAAGAAGACTGCGAATTCAGGGAGCTCCAA GTTTAAGATTTCAGATAATACGAACAAGTCGCCAATTTCGTTTCTGTCAGTAAAGACTGT AGAAAACGAAATAACCGCCCGTGAGAGAAAAACTCTCGAGCTCTTGGAAGCATTCCAGTC TAATGGTAAAACCTCCTTATTTTCGCACGCTTTGGATTTTTCAAAGAAAAGGGGCCATGA GGATGACGATTACCATGAGTAACACAACCGCGCTAGTGAATTCAAAACCATGGAAGTTGA TGATGATAGTCGAAAATCAATGCAGAAAGCTGTCAGTATTTGTAGAAACTCAAAATTTTA AGGCCTATTTTAAAATAGATGCCAAATATTAAAACTAAAAATGAAATTTAAATCGAAAAT AAAACGATATAAGTAAAGACCAAAACCCTACAAAGTGGGTAACGCCATAAGTTACGAAAC ACCTTTAAAATAACAAAACCCTATGAGCAAGCAACACCCTCAAGCCCCTTCTTTCTTTCC TTTTTCCCCTCAACTTCTCTAT
>SAKL0H10318g.cds ATGTTTACTCAAGGTTTAAAGAAGCTCATCGACAAAATGTCCACCGGCCTTGAACCCCAA ACAAGCGCCAAATGTATAATATACACGTCCAAAGGCTTTTTAGAAGTGGAACTATGGGCT AAGGAATGTCATAGAACTGTCAAGAACTTTCTTCAAAACGCTATCGACGGTGCATTTAAC GGTAAAACAATTGACAGGCTATTATTTCAATCCGTGATCTGCAGTGAAGAACCCCAGGGA GGCTTAGACTTGCCATTAGAATGTAACACTAGATTGAATTTTAATAGAAGAGGGCTGGTA GGACTGCTTCCTGATTCCAAAGGCTCCTTCTTTATCACTTTAAAGGAGACTCCTACTTTG AATAACAAGGCAACTGTATTTGGAAAAATAGTTGGTGGGTCAATTTATAATGTGGTCAGT ATTTCAGAAGGTGAATTGAAACCTGATGGTGAAAGTTTCCTTTACCCGGCAGTTATAGAT CGAATCGAAATTACAATACCCTATTTTAATAATTTACTTCCCAAAAACACTGAAAACAAA TCTGGGACAAAACCTTTGAAAAAGAAGTTAAAGAAGGCAACCAAGATAAAGATCAATTAT GAGGAGGAGGAGGAGGAAATTGAGCATGATATCATAGATATTAAGATCCGGCCTGCCCAC GACATGCTTAACGATAACAAGCTGGTTCCTAGTTCGAGTAGCTTGCACAATGACAGTGGG AAAGTGGATGGAATACAGACTAGCCAAGACAGTGATACAAGTATTTCAGAAAAGAAGACT GCGAATTCAGGGAGCTCCAAGTTTAAGATTTCAGATAATACGAACAAGTCGCCAATTTCG TTTCTGTCAGTAAAGACTGTAGAAAACGAAATAACCGCCCGTGAGAGAAAAACTCTCGAG CTCTTGGAAGCATTCCAGTCTAATGGTAAAACCTCCTTATTTTCGCACGCTTTGGATTTT TCAAAGAAAAGGGGCCATGAGGATGACGATTACCATGAGTAA
>SAKL0H10318g.aa MFTQGLKKLIDKMSTGLEPQTSAKCIIYTSKGFLEVELWAKECHRTVKNFLQNAIDGAFN GKTIDRLLFQSVICSEEPQGGLDLPLECNTRLNFNRRGLVGLLPDSKGSFFITLKETPTL NNKATVFGKIVGGSIYNVVSISEGELKPDGESFLYPAVIDRIEITIPYFNNLLPKNTENK SGTKPLKKKLKKATKIKINYEEEEEEIEHDIIDIKIRPAHDMLNDNKLVPSSSSLHNDSG KVDGIQTSQDSDTSISEKKTANSGSSKFKISDNTNKSPISFLSVKTVENEITARERKTLE LLEAFQSNGKTSLFSHALDFSKKRGHEDDDYHE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/SAKL/SAKL0H10318p