HomeSAKL0H01144g
similar to uniprot|P25045 Saccharomyces cerevisiae YMR296C LCB1 Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1653 nucleotides,
on sense strand of
Sakl0H: 123179..124831.
Other names:
SAKL-ORF2482
Coding sequence: 551 codons.
Element length: 1653 nucleotides,
on sense strand of
Sakl0H: 123179..124831.
Other names:
SAKL-ORF2482
Coding sequence: 551 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.F1 GL3C0100.N6Orthologs by synteny: ZYRO0D07282g KLTH0B09306g KLLA0A09955g ERGO0B08624g
Protein SAKL0H01144p 
similar to uniprot|P25045 YMR296C Saccharomyces cerevisiae LCB1 Component of serine palmitoyltransferase responsible along with Lcb2p for the first committed step in sphingolipid synthesis
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>SAKL0H01144g.nt GCACTCACAGTAGCTGCTGCGAGTGCTATTGGCAGTAAGTTGTTAGTGATTTTCATATTT TATTTGCGGTAGCTATAGCTAAATATGACTGAGTGATAAGTAAAAGAGCAAAACACCCCT TGAAACCTTCACAATCTTTATCCCGGTACTTCGAGGTGGTTCGTACGTAGAGATACAAAT CACTTACACAGAAATCCTACTTGCTATTTCTGATGCCGACACCAGCATTTTAGCCGTTTC CTCCCAAGGCCAAAATACAGCCATTTCAAAAAAAAAAAACATAAACAGAAGTATGAATTA AACTTAGAACAGAAGAGGCATCAGAGGCTGTTGATGACTTTTTGTAGGCCTGACGTAAGA CCTTTGCGTAACTCAAAGAGAAGAAGTGGCACAGGTGCAAGCACCTACCAAAGCGTTCAT TCAAGGACCTGCAGATACGTAATATTGATTTTCGAACGGTAATCCAAGCCTTTGTAATAC TCGAAAAAAAAGAAAATACAAATAAAAGGAGGATGAAAGTGTAAACGTAACCCAACCTTT TCAGAAGTAAGCTAGTTCTATTCATATCTCGTTAATTTTCATGTGACATCACCTTTGACG CACAAATAGGAAAATCATAACACATATACATCGTTAAACACGAAATATCCATTTAGCAGA CGTGCGCAGTGAGTTAACCCAGTTCTTTTTTGTAACCCGGTTACGAGAAACGGATCGGGT TATTATCGCCAAATGCGAAACCGGGTTAAAAGTGAGTATCTCTACATACGAATTTAATCA AAAACCAATTCACCAACCACTTCATGTTTTAAATGACCTGAAATGTACTTATTGTATGCA TATACCGTACATCACTATATACCTATACACGGATGTCCGTTGGCCCCCGAAACTAATAGA AAAAGAAAAAATTTGCCACCGGTCAAAACAAAAGTGCCCGTACAAAAGCTGTATTTGATA TTCTCTCATCACAAGGGCATTTGACGGAGCAGCATCGCACATGTCACAGCCACCGGAGAT AATTCCATCTTCAATTCCTATTCCAACAGTGTTGGTAAAAGTCTTTTCGTACCTGTGGTT TTATATCCACAAATGGTTTCTCCAGATACCGGGCGCTCCATATGTCATCTCCTATATTCG TAAGTCTCACCAAGATGACCCTTACAGAACCGCATTTGAGTTTGCTTTAATTGTTTATGG TGTCGTGTACTTTTTGAATAAGCCAAAGAAAAAAGGTGCTGCCAGCCTCCCTCAATTGTC AGAAAGGGATGTCGACAGCTTGATAGACGAATGGGAACCAGAGCCTCTAGTCCACCACGA GCCGAGGCAAAAATGGAGGCTGGACAAGATACCAGTGATCCAGGGCTCAGGCATAGAGAA CTATGTCAATATCACCCGTGGCGAAGGTAAGGAGTCATACTCCAATGTATTTAATTGCGC ATCTAACAACTTCTTGCAGCTGTCCGAAAATCCTAGCGTTCTGAATGAAGTAAAGAAAAC CATTAAAAACTATGGTGTCGGGGCCTGTGGTCCTGCAGGATTTTACGGTAACCAAGATGT CCACAATACTTTGGAGTACGACTTGGCTCGTTTCTTTGGTACTGAGAATGCAGTGTTATA TGGCCAAGATTTTTGTGTAGCTGCATCTGTGCTTCCTGCTTTCACTAAACGTGGTGACGT ATTAGTCGCTGACGATGGTGTTAGCATTTCTTTGCAAAATGCTCTCCAATTGGCCAGGTC CACCGTGTACTACTTCAGACATAATGACATGGATTCATTGGAATCACTACTAAGAGAGTT AAACGAACGGGAAGAACGTGATAGATCACCAGCTTTACCACGTAGATTCATTGTTACCGA GGGGTTGTTCCATAATTCTGGTGACATCGCCCCCCTACCACAATTGGTACGCTTAAAATC CAAGTACAAGTATCGTCTATTCATTGATGAAACATACTCACTCGGGGTATTAGGCTCTAC GGGACGGGGTCTAACAGAGCATTTTAACATGAACAGAGATAAAGTAGTCGATATCACTTT GGGGTCAATGGCCACCGCCTTAGGTTCTTCAGGTGCGTTTGTACTTGGTGACAACGTCAT GTCCCACCATCAACGTATTGGTTCAGCTGCCTACTGTTTTTCCGCATCCTTGCCCCCATA TACCACCAGGGCCGTCTCCAAAGTCTTGGAACTAATGGATGAAGATTCGACTCAGGTGGC TCAATTGCAATCTTTGTCTCGTACTTTGCATAACTTTTTCGCAAACGATGACGAGTTGAG AAAATTTATCGAAGTATTTTCTAGCGAGCATTCCAGCGTACTTCATCTAAGATTGACACC CGAGTTTAGGAGATCTAAATTCAATTCTTCTGAGGAACAGATTTTTGACCGACTAAGATC TTTACAAAACAAGTGCGTCACAGACAAATACATTGAGGAGTACGAAGAAGAAGAAGAATT CTTACAACTCATTGTAGATATCACACTACAACAGTCAAATGTTTTGATAACGAGAAATAC CATTGCTATTAAACACGAGACACTGCCTATAACGCCTAGTCTAAAGATCTGCTGTAACGC TTCTATGTCTGAACAAGAATTACTCGATGCGTGTCATGCAGTAAAACAAGCAACACTACA ATGTTGTGCGTAAGCGAGCCACTTCAGAAAAAAACTAGTCTTTTGTGTAGAATAACTTAC TAGCTACAAGAAAAAACTGCAAAAAAAAAAAAAATGCACAAAAAATGGTTTCGCGATTGC ATAACGTCACATATTTTGAGGGGAAGCGATTGTCTTGCCAAGACTGGATAGAAATTTCTT GGCAGACGGAGAGCGAAATGAAAAAAAAAATTGAACCACACAAGCAACGCAGAGGATGTA AATGATTTGTCGACTGGAGACAAATTCCAATAGCATGCACTCAATCAGAGGTCTCTGTTA GATAAAGCCTTAC
>SAKL0H01144g.cds ATGTCACAGCCACCGGAGATAATTCCATCTTCAATTCCTATTCCAACAGTGTTGGTAAAA GTCTTTTCGTACCTGTGGTTTTATATCCACAAATGGTTTCTCCAGATACCGGGCGCTCCA TATGTCATCTCCTATATTCGTAAGTCTCACCAAGATGACCCTTACAGAACCGCATTTGAG TTTGCTTTAATTGTTTATGGTGTCGTGTACTTTTTGAATAAGCCAAAGAAAAAAGGTGCT GCCAGCCTCCCTCAATTGTCAGAAAGGGATGTCGACAGCTTGATAGACGAATGGGAACCA GAGCCTCTAGTCCACCACGAGCCGAGGCAAAAATGGAGGCTGGACAAGATACCAGTGATC CAGGGCTCAGGCATAGAGAACTATGTCAATATCACCCGTGGCGAAGGTAAGGAGTCATAC TCCAATGTATTTAATTGCGCATCTAACAACTTCTTGCAGCTGTCCGAAAATCCTAGCGTT CTGAATGAAGTAAAGAAAACCATTAAAAACTATGGTGTCGGGGCCTGTGGTCCTGCAGGA TTTTACGGTAACCAAGATGTCCACAATACTTTGGAGTACGACTTGGCTCGTTTCTTTGGT ACTGAGAATGCAGTGTTATATGGCCAAGATTTTTGTGTAGCTGCATCTGTGCTTCCTGCT TTCACTAAACGTGGTGACGTATTAGTCGCTGACGATGGTGTTAGCATTTCTTTGCAAAAT GCTCTCCAATTGGCCAGGTCCACCGTGTACTACTTCAGACATAATGACATGGATTCATTG GAATCACTACTAAGAGAGTTAAACGAACGGGAAGAACGTGATAGATCACCAGCTTTACCA CGTAGATTCATTGTTACCGAGGGGTTGTTCCATAATTCTGGTGACATCGCCCCCCTACCA CAATTGGTACGCTTAAAATCCAAGTACAAGTATCGTCTATTCATTGATGAAACATACTCA CTCGGGGTATTAGGCTCTACGGGACGGGGTCTAACAGAGCATTTTAACATGAACAGAGAT AAAGTAGTCGATATCACTTTGGGGTCAATGGCCACCGCCTTAGGTTCTTCAGGTGCGTTT GTACTTGGTGACAACGTCATGTCCCACCATCAACGTATTGGTTCAGCTGCCTACTGTTTT TCCGCATCCTTGCCCCCATATACCACCAGGGCCGTCTCCAAAGTCTTGGAACTAATGGAT GAAGATTCGACTCAGGTGGCTCAATTGCAATCTTTGTCTCGTACTTTGCATAACTTTTTC GCAAACGATGACGAGTTGAGAAAATTTATCGAAGTATTTTCTAGCGAGCATTCCAGCGTA CTTCATCTAAGATTGACACCCGAGTTTAGGAGATCTAAATTCAATTCTTCTGAGGAACAG ATTTTTGACCGACTAAGATCTTTACAAAACAAGTGCGTCACAGACAAATACATTGAGGAG TACGAAGAAGAAGAAGAATTCTTACAACTCATTGTAGATATCACACTACAACAGTCAAAT GTTTTGATAACGAGAAATACCATTGCTATTAAACACGAGACACTGCCTATAACGCCTAGT CTAAAGATCTGCTGTAACGCTTCTATGTCTGAACAAGAATTACTCGATGCGTGTCATGCA GTAAAACAAGCAACACTACAATGTTGTGCGTAA
>SAKL0H01144g.aa MSQPPEIIPSSIPIPTVLVKVFSYLWFYIHKWFLQIPGAPYVISYIRKSHQDDPYRTAFE FALIVYGVVYFLNKPKKKGAASLPQLSERDVDSLIDEWEPEPLVHHEPRQKWRLDKIPVI QGSGIENYVNITRGEGKESYSNVFNCASNNFLQLSENPSVLNEVKKTIKNYGVGACGPAG FYGNQDVHNTLEYDLARFFGTENAVLYGQDFCVAASVLPAFTKRGDVLVADDGVSISLQN ALQLARSTVYYFRHNDMDSLESLLRELNEREERDRSPALPRRFIVTEGLFHNSGDIAPLP QLVRLKSKYKYRLFIDETYSLGVLGSTGRGLTEHFNMNRDKVVDITLGSMATALGSSGAF VLGDNVMSHHQRIGSAAYCFSASLPPYTTRAVSKVLELMDEDSTQVAQLQSLSRTLHNFF ANDDELRKFIEVFSSEHSSVLHLRLTPEFRRSKFNSSEEQIFDRLRSLQNKCVTDKYIEE YEEEEEFLQLIVDITLQQSNVLITRNTIAIKHETLPITPSLKICCNASMSEQELLDACHA VKQATLQCCA*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/SAKL/SAKL0H01144p