HomeSAKL0D10538g
highly similar to uniprot|P32775 Saccharomyces cerevisiae YEL011W GLC3 Glycogen branching enzyme, involved in glycogen accumulation
Element type: CDS
Element length: 2118 nucleotides,
on anti-sense strand of
Sakl0D: complement(883107..885224).
Other names:
SAKL-ORF8523
Coding sequence: 706 codons.
Element length: 2118 nucleotides,
on anti-sense strand of
Sakl0D: complement(883107..885224).
Other names:
SAKL-ORF8523
Coding sequence: 706 codons.
Homologs and Orthologs
Homologs in protein families: GL3R2291 GL3R2291.F1 GL3R2291.N1Orthologs by synteny: ZYRO0E03828g KLTH0H13794g KLLA0A11176g ERGO0E07282g
Protein SAKL0D10538p 
highly similar to uniprot|P32775 Saccharomyces cerevisiae YEL011W GLC3 Glycogen branching enzyme involved in glycogen accumulation green fluorescent protein (GFP)- fusion protein localizes to the cytoplasm in a punctate pattern
Protein domain map
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>SAKL0D10538g.nt ACAAATCGCCCAGCATAGGTTTTGTAAACAAGATCTTCCACCCGAATATTGATGCTGCAT CTGGATCCATTTGTCTCGATGTGATAAATTCCACGTGGAGCCCGCTTTACGATTTGATAA ATATCGTGGAGTGGATGATCCCCGGACTACTAAAGGAACCCAACGGGAGTGATCCTTTGA ACAACGAAGCTGCTACATTACAACTGAAGAATAAGGAATTGTACGAGGAAAAGATCCAAG AATACATCGACAAGTATGCGACCTCGGAACGGTACGAAGCAATGTTCGGCAAGGGAGATG ACGAAGACGAAGATGACGACGACGAAAACCTGGACGCCAACGAAGAACTAAGTGACGGGG CAGCAGTCAAAGAGGATCTGGATCTCAGTGAAGAGTTGAGTGACATAGAAATGAGTGATG AATACGAAAATAGTGCATATGATGAGGACGAAGAGTCGGATGTTGATCTGGACGAATGAT ATATAGGCATAACCATCATTCCTCCTCCCTTCTCATCTACCCTCACGTTTCCAGATCATG TGATCTGTACGTACATCGGTACATACAGTGGCGAATCGCGGCGGAGACCGAAGTGCTGAC ATCTATCATAGTATACGAACATTCCAACCCAGCACAAGGGGCCTTTTTCTTTTTTTTTTT GCTGGCCCTTTTGTTTGCTCTTTTTTAAATTGTCATTACGGTTTTGGCCCCTTGCTTGAT TTCTCCACGAGCTTGGCTGAAGGGGAATGTTAGATTTGGATATATAAACAGCCTTTGATG TATCAGTTTAAAGGTCATTTATCATCGGTTGTATATAACTAAGAAAAGAAAAAAGATAAC GCTGTTTTTTTTTAATCGAGAGACCTATAGTAAAACATAAGCTACCGATCTCTATTTTCC TTCTTTCCATTTAGCTCTACGTTTGCTTGTTAATATCCAAATTCACGTCGCTTATTTTCC TTCCCTTTTTACCTTTTTCACCCTTTTTTTTTAGCCGCCAATGGAAAACATACCGGAAAA CGTCAGAGGAGCTGTTGAGCTCGATCCATGGTTGAAGCCATTTGCTGCTGTTTTATCAGA GAGGTCTTACTTGGCTGAACAGTGGGCTTACAAGATTAGACATTTAAACGGTACTCCACA GTCGTTGGCTCAATTCACTAGAGACTCTTACAATTCGTATGGGCTACACGCTGATCATAA AACCAAGGAGATTCATTACAAGGAATGGGCACCCAACGCTTCCAAGGCTTTCTTGGTGGG TGACTTTAACAATTGGAACGAATCCTCTCATGAACTAACCCATAGGGATCAGTACGGAAA TTTTTCTACTACTCTACCGCCCACACCATCTGGTGATTTTGCTATTCCTCATGATTCCCG CATTAAGGTGATGTTTGTTTTACCCGATGGCGCCAAGATTTTCCGTCTGCCAGCGTGGAT CAAGAGGGCTACTCAACCTGACAAGGAAACCGCCAAGGCAATCGGTCCAATCTATGAAGG TAGGTTCTGGAACCCCAGCAACCCATATACCTTTAGACATCCAAGACCTCAATTTAACCG TTACAATGACTCTTTGCGTATCTATGAGGCTCATGTCGGTATCTCCACCCCAGATCCAAA GGTTGGCTCTTACAAGGAGTTTACTGCGAAAGTTTTGCCCCGTATCAAAGATCTAGGTTA TGATGCCATCCAACTGATGGCCATCATGGAACACGCGTACTATGCTTCCTTCGGCTACCA GGTTACTAGCTTTTTCGCTGTAAGCTCTAGATATGGTACGCCTGAGGATTTAAAGGAACT GATTGACACTGCCCATAGTATGGGAATTCTGGTTCTATTGGACGTTGTCCACAGCCATGC ATCTAAGAATGTTGAAGACGGTTTGAACATGTTTGATGGATCTGACCATCAGTATTTCCA CTCTTTGAGTTCTGGTAGAGGGGAACACCCGCTGTGGGATTCCCGTTTATTCAACTACGG TAACTTTGAGGTTCTAAGGTTTTTGTTGAGCAATTTAGCCTTTTACGTCGATGTTTATCA GTTTGATGGATTCAGATTTGATGGTGTTACTTCGATGTTGTATAACCACCATGGTGCTGG CGCTGGCGGTGCCTTTAGCGGCGATTACAACGAATACTTGTCCAAGGAAAGGTCACAGGT GGACCACGAGGCTCTAGCGTATTTGATGTTAGCAAACGACTTGGTCCATGAGCTGCTGCC TGATAACGGTATTACAATCGCAGAAGATGTCTCTGGCTACCCAACTTTGTGCCTCTCTAG GGATAAAGGTGGTGCTGGATTTGATTATCGTTTGGCTATGGCTTTACCCGATATGTGGAT CAAACTGCTAAAGGAAAAACAGGATGAGGATTGGGAAATGGGTAACATCGTACACACTTT GACAAATAGACGTCATGCCGAAAAAGTCGTTGCCTACGCAGAGTCTCATGACCAAGCCCT GGTCGGTGACAAGACGTTGGCTTTCTGGTTGATGGACGCTGCCATGTACACCGACATGAC CGTGTTAAAACCTCTTACGCCTGTTGTTGACCGTGGTATTGCATTGCACAAACTGATTCG TTTGATAACCCATTCTTTAGGTGGTGAAGCCTACTTGAACTTTGAAGGTAATGAGTTTGG CCATCCAGAATGGTTGGATTTTCCTAACGTTAACAATGGGGATAGCTACCACTACGCACG CAGGCAGTTCAATCTAGTCGATGATCACCTGTTACGCTACCAACACCTGTATGCCTTTGA CAAAGCCATGCAGGAGACTGAACGCAAATTCCAATGGCTCAATACCCCACAGGCCTATGT GTCCTTGAAACATGAGGTGGACAAGATCATTGCCTTTGAAAGAAACGGGTTACTGTTCAT CTTCAATTTCCATCCAACCCAAAGTTTCACTGATTATAGAATCGGGGTAAACGCACCGGG TTGTTACCGTATCGTGCTGAACAGTGATCAGCCTGGATTTGGTGGTCATAACCGTATTGA CGAGAGTAAGTCTAGGTTTTTTACTACCGACTTGAAATGGAATGATAGAGATAATTTCAT CCAGGTCTACATTCCAGCTAGAGTAGCGCTGGTGCTAGCACTAGAAAGTAGGATTTAAAC TACAACGATTGAGTAGCGTACATTATGTACACCCAAAATATGATTATATCGTCTGATAAA ATTCTAACTAGACTATTTTTCGTTTAATCTTTTTTTTTTTAATTCTTTGTGTGTTTCGCC TATCGAAAAAATGAGCAGATTCTTCAGCGTTTAGCTGATGATACGAAAAAATAAAAGCCC TGTAGGGGGCTCGAACCCCTAGCCTTATGATTAAGAGTCATACGCGCTACCGATTGCGCC AACAAGGCTTAATAACAAGTGTTGCTTAACATTCGAGAGCGTAAACTATATGGTTTAT
Coding sequence
>SAKL0D10538g.cds ATGGAAAACATACCGGAAAACGTCAGAGGAGCTGTTGAGCTCGATCCATGGTTGAAGCCA TTTGCTGCTGTTTTATCAGAGAGGTCTTACTTGGCTGAACAGTGGGCTTACAAGATTAGA CATTTAAACGGTACTCCACAGTCGTTGGCTCAATTCACTAGAGACTCTTACAATTCGTAT GGGCTACACGCTGATCATAAAACCAAGGAGATTCATTACAAGGAATGGGCACCCAACGCT TCCAAGGCTTTCTTGGTGGGTGACTTTAACAATTGGAACGAATCCTCTCATGAACTAACC CATAGGGATCAGTACGGAAATTTTTCTACTACTCTACCGCCCACACCATCTGGTGATTTT GCTATTCCTCATGATTCCCGCATTAAGGTGATGTTTGTTTTACCCGATGGCGCCAAGATT TTCCGTCTGCCAGCGTGGATCAAGAGGGCTACTCAACCTGACAAGGAAACCGCCAAGGCA ATCGGTCCAATCTATGAAGGTAGGTTCTGGAACCCCAGCAACCCATATACCTTTAGACAT CCAAGACCTCAATTTAACCGTTACAATGACTCTTTGCGTATCTATGAGGCTCATGTCGGT ATCTCCACCCCAGATCCAAAGGTTGGCTCTTACAAGGAGTTTACTGCGAAAGTTTTGCCC CGTATCAAAGATCTAGGTTATGATGCCATCCAACTGATGGCCATCATGGAACACGCGTAC TATGCTTCCTTCGGCTACCAGGTTACTAGCTTTTTCGCTGTAAGCTCTAGATATGGTACG CCTGAGGATTTAAAGGAACTGATTGACACTGCCCATAGTATGGGAATTCTGGTTCTATTG GACGTTGTCCACAGCCATGCATCTAAGAATGTTGAAGACGGTTTGAACATGTTTGATGGA TCTGACCATCAGTATTTCCACTCTTTGAGTTCTGGTAGAGGGGAACACCCGCTGTGGGAT TCCCGTTTATTCAACTACGGTAACTTTGAGGTTCTAAGGTTTTTGTTGAGCAATTTAGCC TTTTACGTCGATGTTTATCAGTTTGATGGATTCAGATTTGATGGTGTTACTTCGATGTTG TATAACCACCATGGTGCTGGCGCTGGCGGTGCCTTTAGCGGCGATTACAACGAATACTTG TCCAAGGAAAGGTCACAGGTGGACCACGAGGCTCTAGCGTATTTGATGTTAGCAAACGAC TTGGTCCATGAGCTGCTGCCTGATAACGGTATTACAATCGCAGAAGATGTCTCTGGCTAC CCAACTTTGTGCCTCTCTAGGGATAAAGGTGGTGCTGGATTTGATTATCGTTTGGCTATG GCTTTACCCGATATGTGGATCAAACTGCTAAAGGAAAAACAGGATGAGGATTGGGAAATG GGTAACATCGTACACACTTTGACAAATAGACGTCATGCCGAAAAAGTCGTTGCCTACGCA GAGTCTCATGACCAAGCCCTGGTCGGTGACAAGACGTTGGCTTTCTGGTTGATGGACGCT GCCATGTACACCGACATGACCGTGTTAAAACCTCTTACGCCTGTTGTTGACCGTGGTATT GCATTGCACAAACTGATTCGTTTGATAACCCATTCTTTAGGTGGTGAAGCCTACTTGAAC TTTGAAGGTAATGAGTTTGGCCATCCAGAATGGTTGGATTTTCCTAACGTTAACAATGGG GATAGCTACCACTACGCACGCAGGCAGTTCAATCTAGTCGATGATCACCTGTTACGCTAC CAACACCTGTATGCCTTTGACAAAGCCATGCAGGAGACTGAACGCAAATTCCAATGGCTC AATACCCCACAGGCCTATGTGTCCTTGAAACATGAGGTGGACAAGATCATTGCCTTTGAA AGAAACGGGTTACTGTTCATCTTCAATTTCCATCCAACCCAAAGTTTCACTGATTATAGA ATCGGGGTAAACGCACCGGGTTGTTACCGTATCGTGCTGAACAGTGATCAGCCTGGATTT GGTGGTCATAACCGTATTGACGAGAGTAAGTCTAGGTTTTTTACTACCGACTTGAAATGG AATGATAGAGATAATTTCATCCAGGTCTACATTCCAGCTAGAGTAGCGCTGGTGCTAGCA CTAGAAAGTAGGATTTAA
Predicted translation product
>SAKL0D10538g.aa MENIPENVRGAVELDPWLKPFAAVLSERSYLAEQWAYKIRHLNGTPQSLAQFTRDSYNSY GLHADHKTKEIHYKEWAPNASKAFLVGDFNNWNESSHELTHRDQYGNFSTTLPPTPSGDF AIPHDSRIKVMFVLPDGAKIFRLPAWIKRATQPDKETAKAIGPIYEGRFWNPSNPYTFRH PRPQFNRYNDSLRIYEAHVGISTPDPKVGSYKEFTAKVLPRIKDLGYDAIQLMAIMEHAY YASFGYQVTSFFAVSSRYGTPEDLKELIDTAHSMGILVLLDVVHSHASKNVEDGLNMFDG SDHQYFHSLSSGRGEHPLWDSRLFNYGNFEVLRFLLSNLAFYVDVYQFDGFRFDGVTSML YNHHGAGAGGAFSGDYNEYLSKERSQVDHEALAYLMLANDLVHELLPDNGITIAEDVSGY PTLCLSRDKGGAGFDYRLAMALPDMWIKLLKEKQDEDWEMGNIVHTLTNRRHAEKVVAYA ESHDQALVGDKTLAFWLMDAAMYTDMTVLKPLTPVVDRGIALHKLIRLITHSLGGEAYLN FEGNEFGHPEWLDFPNVNNGDSYHYARRQFNLVDDHLLRYQHLYAFDKAMQETERKFQWL NTPQAYVSLKHEVDKIIAFERNGLLFIFNFHPTQSFTDYRIGVNAPGCYRIVLNSDQPGF GGHNRIDESKSRFFTTDLKWNDRDNFIQVYIPARVALVLALESRI*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/SAKL/SAKL0D10538p