HomeSAKL0A01738g
highly similar to uniprot|P25636 Saccharomyces cerevisiae YCR057C PWP2 Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites
Element type: CDS
Element length: 2730 nucleotides,
on sense strand of
Sakl0A: 157360..160089.
Other names:
SAKL-ORF15606
Coding sequence: 910 codons.
Element length: 2730 nucleotides,
on sense strand of
Sakl0A: 157360..160089.
Other names:
SAKL-ORF15606
Coding sequence: 910 codons.
Homologs and Orthologs
Homologs in protein family: GL3C0129Orthologs: strict determination not possible; homologs must be refined manually
Protein SAKL0A01738p 
highly similar to uniprot|P25636 Saccharomyces cerevisiae YCR057C PWP2 Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites;
Protein domain map
Computed results for SAKL0A01738p
None available yet
Gene Ontology terms
None available yet
Sequence data
>SAKL0A01738g.nt ATGAAGTCGGATTTTAAGTTCTCCAACCTTTTGGGTACTGTTTACAGGCAAGGAAATGTT ATTTTTTCTGATGACGGAACTAAATTGCTAAGCCCTGTCGGGAATAGAGTGTCAGTGTTT GACTTAATTAATAACAAGTCTTTCACTTTTGAATATGAACATAGGAAGAACATCGCAAGA ATTGACTTAAACAAACAGGGGACATTGCTTTTGTCGGTTGATGAGGATGGGCGTGCCATC CTGGTCAATTTTAAGTCTCGTAACGTCTTGCATCATTTCAACTTTAGAGAAAAGGTTTAC GATTTGAAGTTCTCTCCGGATGGTAGACTGTTTGCTTTAGCTTGTGGAAGATTTATTCAA ATATGGAAGACTCCAGACGTTAGTGAAGATAGACAATTTGCCCCATTCGTTCGTTATAGG GTCCATGCAGGCCATTTTGCAGATATCATCTCTTTAACATGGTCTCCAGATTCTAGATTT ATTACTTCCACTTCTAAAGATCTAACTGCGAGGATATGGTCCATCGACTCCGAAGAAAAA GACTTGGCATCTATGACATTTGCAGGCCACAAAGATTACGTTGTGAACTCCTTTTTTAGC GCTGACCAAGAAATAATTTACACCATCAGTAAGGATGGTGCGCTGTTTCAATGGGAATAT ACAAGAAGACCAGACGAAGTTGATGAAGAAGAAAGTGAAGATGAAGAAAATATTGATTTG TCAAAATATAGCTGGAGAATCACTAAAAAAAACTTTTTCTACACCAATCAAGCCAAAGTG AAATGTGCTATTTTTCATCCACAGTCCAACCTGTTAATCGTTGGATTTAGCAACGGTGAG TTCAGGCTTTATGAACTACCACATTTCGCTTTAATTCAACAATTGTCTATGGGCCAAAAT GCTGTTAACACTGTTTCCATTAACAACTCTGGTGAATGGTTGGCTTTTGGTTCCAGCAAA TTAGGACAGCTGTTGGTCTATGAATGGCAGTCAGAATCCTATATTTTGAAGCAACAAGGA CACTTTGATTCTATGAACTCCTTAACATACTCTCCGGATGGATCACGTGTTGTTACCTCT TCCGATGACGGCAAGATCAAAATATGGGACGTTGTCTCCGGTTTCTGTCTAGCTACTTTC GATGATCATACTTCATCTGTTACTGCGGTTCAATTTGCCAAGAAAGGCCAAGTGCTATTC TCCGCATCTTTAGATGGCACTGTTAAAGCATGGGATTTAATCAGGTATCGTAATTTCAGA ACTTTTACTGCTGCTGAAAGAATTCAATTTAACTGTCTGGCAGTAGATCCAAGTGGTGAA GTGGTTTGTGCTGGCTCTGTGGACAGTTTTGAAATCCACGTTTGGTCTGTACAAACCGGG AATTTATTGGACACTCTAGCTGGTCACGAAGGGCCTGTTTCTTGTCTATCGTTCAGTAAT GAAAACAGTGTCCTGGCATCTGCTTCATGGGATAAGACAATCAGGATTTGGAGTATATTC GGTAGATCTCAACAGGTCGAACCGTTTGATGTTTATTCTGATGTCCTGGCTATTTCTATG AGACCAGATGGTAAGCAGGTTGCTGCGACTACCCTAAATGGCCAAATCTCCTTTTTCGAC ATTCAAAGTGGTAAGCAAGTCGGAAATATTGACTGTAGAAAAGACATTGTTTCTGGTAGA CATCTCGAAGATAGGTTTACTGCAAAGAATTCTGCAAGATCCAAGTATTTTACCACTATA AACTATAGTTTTGATGGTCTCTCTATTGTTGCAGGTGGTAATAATAACTCTATTTGCCTG TACGACATCTCGAATGAAGTTTTATTAAGAAGATTTGTGGTTTCTAGAAATATGACTCTA AACGGCACTATGGAGTTTTTGAATAGCAGTAAGATGACTGAAGCTGGAACTCTCGATTTG ATCGATCAAGATGCGGAAAATTCAGATTTGGAAGATCGTATCGACAACTCTCTACCAGGA TCTAACAGGGGTGGTGATCTCTCGACTAGGAGAGTGAGGCCAGAAATTAGAGTGATAGCT GTTCAGTTCTCGCCTACTGCAAATGCATTTGCAGCAGCATCAACGGAAGGGTTACTGGTT TATTCCGTTGACGAAACAGTATTTTTTGATCCGTTTGATCTAGACGTTGATGTTACTCCT CAAACAACTTTAGAAGCTTTGGAAAACAAAGAATACTTAAACTCACTGGTCATGGCCTTT AGATTAAATGAAGAGTATCTAATTAACAGGGTCTACGAATCTGTACCCATCAAGGATATT CCATTAGTCAGTGCTAACTTACCAATCGTCTATGCGGCTAGAATTTTACGGTTTATTGGT AACTTCTCTATGGACTCTCAACACATTGAGTTCAACTTACTGTGGGTCAAATCATTGCTT TCAGCACACGGCAAATACATTAATGCTCACAAGCAAGAGTTTACCAGTGCATTGAGAGCA GTTCAAAGATTCATTGGTAGAGTGGCGAAAGATGTTGTAGCTGCCTCTAAAGACAACAAA TATGCCTACTACTTTCTTACTTCTACTGATGGGACTTTAGAACAAAGTGATGCGGAAGAT GAAATTAATTTAGATCGAGAGGAGGATAGTCTTGATGAAGACGCAATGGAAGCTTCTGAC GATGAAGAGGAGTGGGTAGGTTTCAGCGATAAGGACAACAAGCTACCATTACAACAGGAC GAAGATGATTCAGATGAAGATTTAATCTAA
>SAKL0A01738g.cds ATGAAGTCGGATTTTAAGTTCTCCAACCTTTTGGGTACTGTTTACAGGCAAGGAAATGTT ATTTTTTCTGATGACGGAACTAAATTGCTAAGCCCTGTCGGGAATAGAGTGTCAGTGTTT GACTTAATTAATAACAAGTCTTTCACTTTTGAATATGAACATAGGAAGAACATCGCAAGA ATTGACTTAAACAAACAGGGGACATTGCTTTTGTCGGTTGATGAGGATGGGCGTGCCATC CTGGTCAATTTTAAGTCTCGTAACGTCTTGCATCATTTCAACTTTAGAGAAAAGGTTTAC GATTTGAAGTTCTCTCCGGATGGTAGACTGTTTGCTTTAGCTTGTGGAAGATTTATTCAA ATATGGAAGACTCCAGACGTTAGTGAAGATAGACAATTTGCCCCATTCGTTCGTTATAGG GTCCATGCAGGCCATTTTGCAGATATCATCTCTTTAACATGGTCTCCAGATTCTAGATTT ATTACTTCCACTTCTAAAGATCTAACTGCGAGGATATGGTCCATCGACTCCGAAGAAAAA GACTTGGCATCTATGACATTTGCAGGCCACAAAGATTACGTTGTGAACTCCTTTTTTAGC GCTGACCAAGAAATAATTTACACCATCAGTAAGGATGGTGCGCTGTTTCAATGGGAATAT ACAAGAAGACCAGACGAAGTTGATGAAGAAGAAAGTGAAGATGAAGAAAATATTGATTTG TCAAAATATAGCTGGAGAATCACTAAAAAAAACTTTTTCTACACCAATCAAGCCAAAGTG AAATGTGCTATTTTTCATCCACAGTCCAACCTGTTAATCGTTGGATTTAGCAACGGTGAG TTCAGGCTTTATGAACTACCACATTTCGCTTTAATTCAACAATTGTCTATGGGCCAAAAT GCTGTTAACACTGTTTCCATTAACAACTCTGGTGAATGGTTGGCTTTTGGTTCCAGCAAA TTAGGACAGCTGTTGGTCTATGAATGGCAGTCAGAATCCTATATTTTGAAGCAACAAGGA CACTTTGATTCTATGAACTCCTTAACATACTCTCCGGATGGATCACGTGTTGTTACCTCT TCCGATGACGGCAAGATCAAAATATGGGACGTTGTCTCCGGTTTCTGTCTAGCTACTTTC GATGATCATACTTCATCTGTTACTGCGGTTCAATTTGCCAAGAAAGGCCAAGTGCTATTC TCCGCATCTTTAGATGGCACTGTTAAAGCATGGGATTTAATCAGGTATCGTAATTTCAGA ACTTTTACTGCTGCTGAAAGAATTCAATTTAACTGTCTGGCAGTAGATCCAAGTGGTGAA GTGGTTTGTGCTGGCTCTGTGGACAGTTTTGAAATCCACGTTTGGTCTGTACAAACCGGG AATTTATTGGACACTCTAGCTGGTCACGAAGGGCCTGTTTCTTGTCTATCGTTCAGTAAT GAAAACAGTGTCCTGGCATCTGCTTCATGGGATAAGACAATCAGGATTTGGAGTATATTC GGTAGATCTCAACAGGTCGAACCGTTTGATGTTTATTCTGATGTCCTGGCTATTTCTATG AGACCAGATGGTAAGCAGGTTGCTGCGACTACCCTAAATGGCCAAATCTCCTTTTTCGAC ATTCAAAGTGGTAAGCAAGTCGGAAATATTGACTGTAGAAAAGACATTGTTTCTGGTAGA CATCTCGAAGATAGGTTTACTGCAAAGAATTCTGCAAGATCCAAGTATTTTACCACTATA AACTATAGTTTTGATGGTCTCTCTATTGTTGCAGGTGGTAATAATAACTCTATTTGCCTG TACGACATCTCGAATGAAGTTTTATTAAGAAGATTTGTGGTTTCTAGAAATATGACTCTA AACGGCACTATGGAGTTTTTGAATAGCAGTAAGATGACTGAAGCTGGAACTCTCGATTTG ATCGATCAAGATGCGGAAAATTCAGATTTGGAAGATCGTATCGACAACTCTCTACCAGGA TCTAACAGGGGTGGTGATCTCTCGACTAGGAGAGTGAGGCCAGAAATTAGAGTGATAGCT GTTCAGTTCTCGCCTACTGCAAATGCATTTGCAGCAGCATCAACGGAAGGGTTACTGGTT TATTCCGTTGACGAAACAGTATTTTTTGATCCGTTTGATCTAGACGTTGATGTTACTCCT CAAACAACTTTAGAAGCTTTGGAAAACAAAGAATACTTAAACTCACTGGTCATGGCCTTT AGATTAAATGAAGAGTATCTAATTAACAGGGTCTACGAATCTGTACCCATCAAGGATATT CCATTAGTCAGTGCTAACTTACCAATCGTCTATGCGGCTAGAATTTTACGGTTTATTGGT AACTTCTCTATGGACTCTCAACACATTGAGTTCAACTTACTGTGGGTCAAATCATTGCTT TCAGCACACGGCAAATACATTAATGCTCACAAGCAAGAGTTTACCAGTGCATTGAGAGCA GTTCAAAGATTCATTGGTAGAGTGGCGAAAGATGTTGTAGCTGCCTCTAAAGACAACAAA TATGCCTACTACTTTCTTACTTCTACTGATGGGACTTTAGAACAAAGTGATGCGGAAGAT GAAATTAATTTAGATCGAGAGGAGGATAGTCTTGATGAAGACGCAATGGAAGCTTCTGAC GATGAAGAGGAGTGGGTAGGTTTCAGCGATAAGGACAACAAGCTACCATTACAACAGGAC GAAGATGATTCAGATGAAGATTTAATCTAA
>SAKL0A01738g.aa MKSDFKFSNLLGTVYRQGNVIFSDDGTKLLSPVGNRVSVFDLINNKSFTFEYEHRKNIAR IDLNKQGTLLLSVDEDGRAILVNFKSRNVLHHFNFREKVYDLKFSPDGRLFALACGRFIQ IWKTPDVSEDRQFAPFVRYRVHAGHFADIISLTWSPDSRFITSTSKDLTARIWSIDSEEK DLASMTFAGHKDYVVNSFFSADQEIIYTISKDGALFQWEYTRRPDEVDEEESEDEENIDL SKYSWRITKKNFFYTNQAKVKCAIFHPQSNLLIVGFSNGEFRLYELPHFALIQQLSMGQN AVNTVSINNSGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSMNSLTYSPDGSRVVTS SDDGKIKIWDVVSGFCLATFDDHTSSVTAVQFAKKGQVLFSASLDGTVKAWDLIRYRNFR TFTAAERIQFNCLAVDPSGEVVCAGSVDSFEIHVWSVQTGNLLDTLAGHEGPVSCLSFSN ENSVLASASWDKTIRIWSIFGRSQQVEPFDVYSDVLAISMRPDGKQVAATTLNGQISFFD IQSGKQVGNIDCRKDIVSGRHLEDRFTAKNSARSKYFTTINYSFDGLSIVAGGNNNSICL YDISNEVLLRRFVVSRNMTLNGTMEFLNSSKMTEAGTLDLIDQDAENSDLEDRIDNSLPG SNRGGDLSTRRVRPEIRVIAVQFSPTANAFAAASTEGLLVYSVDETVFFDPFDLDVDVTP QTTLEALENKEYLNSLVMAFRLNEEYLINRVYESVPIKDIPLVSANLPIVYAARILRFIG NFSMDSQHIEFNLLWVKSLLSAHGKYINAHKQEFTSALRAVQRFIGRVAKDVVAASKDNK YAYYFLTSTDGTLEQSDAEDEINLDREEDSLDEDAMEASDDEEEWVGFSDKDNKLPLQQD EDDSDEDLI*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://192.168.122.177/elt/SAKL/SAKL0A01738p