SACE0P04840g


Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to S. pombe Cwf27p

Genomic environment map

Element type: CDS
Element length: 906 nucleotides,
on anti-sense strand of
Sace0P: complement(428708..429613).
Other names:
CWC27
YPL064C
Coding sequence: 302 codons.
Database cross references:
ArrayExpress: Q02770
CYGD: YPL064c
EMBL: AAB68301.1
EMBL: U39205
Ensembl: YPL064C
GeneID: 856041
GenomeReviews: U00094_GR
HOGENOM: Q02770
NMPDR: fig|4932.3.peg.6394

Computed results  

None available yet

Homologs and Orthologs

Homologs in protein families: GL3R3437 GL3R3437.N1
Orthologs: strict determination not possible; homologs must be refined manually

Protein SACE0P04840p  


Protein domain map

Protein length: 301 amino acids
Protein family: GL3R3437
Database cross references:
DIP: DIP:2778N
Gene3D: G3DSA:2.40.100.10
GermOnline: YPL064C
IntAct: Q02770
InterPro: IPR002130
KEGG: sce:YPL064C
LinkHub: Q02770
PANTHER: PTHR11071
PIR: S60926
PROSITE: PS00170
PROSITE: PS50072
PeptideAtlas: Q02770
RefSeq: NP_015261.1
SGD: S000005985
UniProtKB/Swiss-Prot: Q02770
UniprotKB: CWC27_YEAST

Computed results for SACE0P04840p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

GO:0005681 spliceosome

Sequence data  


Nucleotide sequence    

>SACE0P04840g.nt
ACCCAAGAAGTAGTCAGCACCAGGTCTTTTGGCCGTTCTCCAACCATGCTTTTGAGACCA
CTCAGAATGAACCAAAAAATCTTCCAATGTGATAACAAGAGTTAATGGCCTTTGGTACGG
TGGTGGTGGTGGTGGAGGTAGTAAATCAGGGAAAGGTGGCTCTTGGAAGTAGGTGAACAT
TGAGTTGAACCTGGCCTTGAATCTTTTATACATAAGTGATAAAGTGTAGCCATTATCGAT
GTCTTTCTTCAATTCTTCAGACTCTTGAGGCTCCCAATCCCTTGCCATGTAGATTGCAGT
ACCTGTCAACGCAGACAACGAAAAAATGTAAAACCAGTTAGCATACTTTTCTCTTTTAAT
ATCTGTAGAAGTTTGTCTTTTTCTTCTAGATTTTTCACTTTTGGAAGAAGGTTCATTCTT
GTCCTCTCCTCCTTCTCCTGATGTTTCCTCGTTTTTGCCTTGGCCCTTCTCATCGACGTC
AACACCGGCCTTGAACAGCATATCATCTGTAAGAATGGATTTAGGCTTGTCGTCTTTTGT
TTCTTTTTGTAAAAAACTTGAATAACTTGTTAAAAGTCTTCTGGATGCTTGAACCGATGT
TAAGGTGTTGGCGGCAGATGGCACAACCCTAAGAGCCCTTGAATTTAGTCTCACCGAATT
TCTTAAAATGGACAGCATTGCAAGCGGGTGATTTTTGGAAGTTTATTCTAGCTGTGATGT
GCTAAAGCAAAAAATCAGTTATGCGCCAAAAGCTAATCACGAAATTGAGTGGATGCTAGA
AATTACCGTTCCGATTAATCCTGACGTTATGTTCGTTTGCTGAATATATCTCACTTTACT
GAAAGAACTTCCAATTTTTTTTTTTTCCTTTTCCGCTGTAAAGCGTCTGAAGAGAAAAAA
AGGTTCAAAATGTCCTGAGAATAATTTATTGAATAATTTATTATTCAAAGCGTATTACAG
GAAACATGTATGATGAGTTTTAAACCAAAGTAAGAATGCTATGTCCAGTAATATAGAACC
TCAGACAACAGCTAAATGTATACTGTATACAACAAAGGGGAACATTGCCATTGAATTATG
GGCTAAAGAATGCCCTGAGACATGTAAGAGGTTCTTATCTATGCTCTCAGATGGCACATT
CACCAATGGAGAATTTAAAGAGTTAAAGCCAACACAGTGGCTAATGTTTAATGCAAATAG
TACTGGTGAGTACCGTACAGTTGCTGAGGAAAAAAATCCTCGTATACGCTTCAATAGAGA
TGGACTCTTGGGATGGGATAGACGAAGGAACACATGGTTTATAACTGTGCTGGCGGATTC
TAAGCACGTACTGAACGATTGTAATGTATTTGGCAAAATTGTTGGGAAATCTATTTACAT
CTTTAGAGAGATCTTGGGCGGCGAAATTGAAGCTTCCTCCCGTGACAATGATGTCAAACG
ATTCATGTATCCTGCAGTTTTGAAGGATGTTGAGATTACCATACCATTCTTTGAGGACAT
CTTTGGATCAAAAAGAAGACTGGAAGATAATGAAAAAAAAGAACAAGAGCCGGCAAAGAA
ACTTGTGAAATCAGCAAAAGTAAAGATGGTTTATGAAGATGAGCAAGAGGATGATGATGG
TGATGTTCAAAAGCTTAAGCCAAGAAAGAGAATGATTCTCCCAGCATGGATCAAAGATGA
TAGTCGCAGTGAAGGAATTAAACTAGACGCATCCTTAGATCAGCCACAAGAGGCACTAAT
TAGGGAAAAGACGGAGTTGCATGATAATGTTGATGAGGCAACCACTAAAGAAACGGAAAG
TCAAGAAAACATCAAGGAAGAACCAATGGATAAAAGAGAGCGGGAAACTTTGGCAATGTT
GTCAAAATTTCAAGAACGAATAAAAAACAAGAATATTCTAAAGTGAAATAGAAACGCTTG
TGTACTTATATATGTTATCATAATTTCTATTTGTTTATTTCTTAATCCAGTAAAGCATAA
AAACTTTTATAGGCTAGTTCTAGATCAAACAGAAGTTCTCTAATTTGTGTTTCAGTTAAA
GTGTCACCAATTGAGAGTTTATTTATTCTGACAATCCAGTCAATGAGTTTTGATCTATTC
TCAAAATCATCCCTGGTGACGCGATTTATGCTGATTAACAGTTCAGCCAATAAGGGATGT
AATTGATCTTTTGCATTATAGTTTAGTTTCAAAGCATCCATTACAG

Coding sequence    

>SACE0P04840g.cds
ATGTCCAGTAATATAGAACCTCAGACAACAGCTAAATGTATACTGTATACAACAAAGGGG
AACATTGCCATTGAATTATGGGCTAAAGAATGCCCTGAGACATGTAAGAGGTTCTTATCT
ATGCTCTCAGATGGCACATTCACCAATGGAGAATTTAAAGAGTTAAAGCCAACACAGTGG
CTAATGTTTAATGCAAATAGTACTGGTGAGTACCGTACAGTTGCTGAGGAAAAAAATCCT
CGTATACGCTTCAATAGAGATGGACTCTTGGGATGGGATAGACGAAGGAACACATGGTTT
ATAACTGTGCTGGCGGATTCTAAGCACGTACTGAACGATTGTAATGTATTTGGCAAAATT
GTTGGGAAATCTATTTACATCTTTAGAGAGATCTTGGGCGGCGAAATTGAAGCTTCCTCC
CGTGACAATGATGTCAAACGATTCATGTATCCTGCAGTTTTGAAGGATGTTGAGATTACC
ATACCATTCTTTGAGGACATCTTTGGATCAAAAAGAAGACTGGAAGATAATGAAAAAAAA
GAACAAGAGCCGGCAAAGAAACTTGTGAAATCAGCAAAAGTAAAGATGGTTTATGAAGAT
GAGCAAGAGGATGATGATGGTGATGTTCAAAAGCTTAAGCCAAGAAAGAGAATGATTCTC
CCAGCATGGATCAAAGATGATAGTCGCAGTGAAGGAATTAAACTAGACGCATCCTTAGAT
CAGCCACAAGAGGCACTAATTAGGGAAAAGACGGAGTTGCATGATAATGTTGATGAGGCA
ACCACTAAAGAAACGGAAAGTCAAGAAAACATCAAGGAAGAACCAATGGATAAAAGAGAG
CGGGAAACTTTGGCAATGTTGTCAAAATTTCAAGAACGAATAAAAAACAAGAATATTCTA
AAGTGA

Predicted translation product    

>SACE0P04840g.aa
MSSNIEPQTTAKCILYTTKGNIAIELWAKECPETCKRFLSMLSDGTFTNGEFKELKPTQW
LMFNANSTGEYRTVAEEKNPRIRFNRDGLLGWDRRRNTWFITVLADSKHVLNDCNVFGKI
VGKSIYIFREILGGEIEASSRDNDVKRFMYPAVLKDVEITIPFFEDIFGSKRRLEDNEKK
EQEPAKKLVKSAKVKMVYEDEQEDDDGDVQKLKPRKRMILPAWIKDDSRSEGIKLDASLD
QPQEALIREKTELHDNVDEATTKETESQENIKEEPMDKRERETLAMLSKFQERIKNKNIL
K*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites