SACE0O06028g


Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis

Genomic environment map

Element type: CDS
Element length: 777 nucleotides,
on anti-sense strand of
Sace0O: complement(503553..504329).
Other names:
RKI1
YOR095C
Coding sequence: 259 codons.
Database cross references:
ArrayExpress: Q12189
CYGD: YOR095c
EMBL: CAA64017.1
EMBL: CAA99292.1
EMBL: X94335
EMBL: Z75003
Ensembl: YOR095C
GeneID: 854262
GenomeReviews: Y13140_GR
HOGENOM: Q12189
NMPDR: fig|4932.3.peg.5840

Computed results  

None available yet

Homologs and Orthologs

Homologs in protein families: GL3R2152 GL3R2152.N1
Orthologs: strict determination not possible; homologs must be refined manually

Protein SACE0O06028p  


Protein domain map

Protein length: 258 amino acids
Protein family: GL3R2152
Database cross references:
DIP: DIP:4155N
GermOnline: YOR095C
IntAct: Q12189
InterPro: IPR004788
KEGG: sce:YOR095C
LinkHub: Q12189
PANTHER: PTHR11934
PDB: 1XTZ
PDBsum: 1XTZ
PIR: S61656
PeptideAtlas: Q12189
Pfam: PF06026
ProDom: PD005813
RefSeq: NP_014738.1
SGD: S000005621
TIGRFAMs: TIGR00021
UniProtKB/Swiss-Prot: Q12189
UniprotKB: RPIA_YEAST

Computed results for SACE0O06028p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

GO:0042802 identical protein binding
GO:0008615 pyridoxine biosynthetic process
GO:0006098 pentose-phosphate shunt
GO:0005737 cytoplasm
GO:0005634 nucleus
GO:0004751 ribose-5-phosphate isomerase activity

Sequence data  


Nucleotide sequence    

>SACE0O06028g.nt
GTTTGGGTGTGATAAGGTTCATTGTGTATGGGTTTGAAATGAATGACGGTCATATTATTC
TGCTCTTGAGCGCCTTCGGTGATAGAGCCGTATGTTGAAAAACGTGCGTAAATAAGGCAC
GCACAATAGGAAATCATGCATGGTTGGTATAGACATCAAGATCGTTATTTTTGAAACATT
ATTTTTATTCTAATAGCAGTTTGCGAACGCATTAAGTTGAGTATTGTTTCTTGGAGAGAT
TCATGATATTACTCAATCATTATCTGCCGGTGAGATCACGAGTAGCAGAAGAAAGGGGCA
TCGGACGGTCTTATTTGGCATTTTCGATCGTAATACCGCTTCTGTTTTGGCACTGATAAT
GTTCACAAAACTTTCTCTTGTAAACTAAAACGTTTACATAACTTCTAGCAAAGTTATAGT
ATTGCGGAAAGATTACCCACCTGATATGCGTTAATTAGTCATGTTCAAATTTCAGAAAGC
CTTTTTCTATAAAAGATTATACAATGACATCCGGTAAGTCCGCCACACTATAGCTATTTT
ACGAGAAACCTTGGATGCTGCCAAATGTGGTATATCAACCAGCGTTGGTATAAGTCTCGT
AAGTGAATTAATTGAGTTTAGTACTTGTTATAATGATGTACTAGCTTCATACCCCCTCTT
TTTTTCGGGCTAATGGGAGTAATGGCATGGCCCAGATTGCTTGTGGCCGAGGCAGTGAAA
AGTCGCGATGAGTTGAAAAATTTTTTTGCGATGAGGGAAAAGCGATTAACTCGGTGAAAT
TTCATCTGGTTCGTAATTGGGTGTCAGTTTACGTACGCTTTGGATAATATAATATATGTA
CGGCTTGCGTTGCAGTGTGAAACTGTTTCAATTTATTACATGCAATTTATTCTCTTTGTA
CTGGGACGTTCTTTTCTCTTGTAGAAAATTAACAACATCGTGTTACATAAACTTGGTTAC
CGCATACTGCAACCTCATATAAATACAACATAGGAAAGAAATGGCTGCCGGTGTCCCAAA
AATTGATGCGTTAGAATCTTTGGGCAATCCTTTGGAGGATGCCAAGAGAGCTGCAGCATA
CAGAGCAGTTGATGAAAATTTAAAATTTGATGATCACAAAATTATTGGAATTGGTAGTGG
TAGCACAGTGGTTTATGTTGCCGAAAGAATTGGACAATATTTGCATGACCCTAAATTTTA
TGAAGTAGCGTCTAAATTCATTTGCATTCCAACAGGATTCCAATCAAGAAACTTGATTTT
GGATAACAAGTTGCAATTAGGCTCCATTGAACAGTATCCTCGCATTGATATAGCGTTTGA
CGGTGCTGATGAAGTGGATGAGAATTTACAATTAATTAAAGGTGGTGGTGCTTGTCTATT
TCAAGAAAAATTGGTTAGTACTAGTGCTAAAACCTTCATTGTCGTTGCTGATTCAAGAAA
AAAGTCACCAAAACATTTAGGTAAGAACTGGAGGCAAGGTGTTCCCATTGAAATTGTACC
TTCCTCATACGTGAGGGTCAAGAATGATCTATTAGAACAATTGCATGCTGAAAAAGTTGA
CATCAGACAAGGAGGTTCTGCTAAAGCAGGTCCTGTTGTAACTGACAATAATAACTTCAT
TATCGATGCGGATTTCGGTGAAATTTCCGATCCAAGAAAATTGCATAGAGAAATCAAACT
GTTAGTGGGCGTGGTGGAAACAGGTTTATTCATCGACAACGCTTCAAAAGCCTACTTCGG
TAATTCTGACGGTAGTGTTGAAGTTACCGAAAAGTGAGCAGATCAAAGGCAAAGACAGAA
ACCGTAGTAAAGGTTGACTTTTCACAACAGTGTCTCCATTTTTTATATTGTATTATTAAA
GCTATTTAGTTATTTGGATACTGTTTTTTTTCCAGAAGTTTTCTTTTTAGTAAAGTACAA
TCCAGTAAAAATGAAGGATGAACAATCGGTGTATGCAGATTCAACACCAATAAATGCAAT
GTTTATTTCTTTGGAACGTTTGTGTTGTTCGAAATCCAGGATAATCCTTCAACAAGACCC
TGTCCGGATAAGGCGTTACTACCGATGACACACCAAG

Coding sequence    

>SACE0O06028g.cds
ATGGCTGCCGGTGTCCCAAAAATTGATGCGTTAGAATCTTTGGGCAATCCTTTGGAGGAT
GCCAAGAGAGCTGCAGCATACAGAGCAGTTGATGAAAATTTAAAATTTGATGATCACAAA
ATTATTGGAATTGGTAGTGGTAGCACAGTGGTTTATGTTGCCGAAAGAATTGGACAATAT
TTGCATGACCCTAAATTTTATGAAGTAGCGTCTAAATTCATTTGCATTCCAACAGGATTC
CAATCAAGAAACTTGATTTTGGATAACAAGTTGCAATTAGGCTCCATTGAACAGTATCCT
CGCATTGATATAGCGTTTGACGGTGCTGATGAAGTGGATGAGAATTTACAATTAATTAAA
GGTGGTGGTGCTTGTCTATTTCAAGAAAAATTGGTTAGTACTAGTGCTAAAACCTTCATT
GTCGTTGCTGATTCAAGAAAAAAGTCACCAAAACATTTAGGTAAGAACTGGAGGCAAGGT
GTTCCCATTGAAATTGTACCTTCCTCATACGTGAGGGTCAAGAATGATCTATTAGAACAA
TTGCATGCTGAAAAAGTTGACATCAGACAAGGAGGTTCTGCTAAAGCAGGTCCTGTTGTA
ACTGACAATAATAACTTCATTATCGATGCGGATTTCGGTGAAATTTCCGATCCAAGAAAA
TTGCATAGAGAAATCAAACTGTTAGTGGGCGTGGTGGAAACAGGTTTATTCATCGACAAC
GCTTCAAAAGCCTACTTCGGTAATTCTGACGGTAGTGTTGAAGTTACCGAAAAGTGA

Predicted translation product    

>SACE0O06028g.aa
MAAGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQY
LHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIK
GGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQ
LHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDN
ASKAYFGNSDGSVEVTEK*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites