SACE0G04796g


Catalytic component of UDP-GlcNAc transferase, required for the second step of dolichyl-linked oligosaccharide synthesis; anchored to the ER membrane via interaction with Alg14p; similar to bacterial and human glycosyltransferases

Genomic environment map

Element type: CDS
Element length: 609 nucleotides,
on sense strand of
Sace0G: 411555..412163.
Other names:
ALG13
YGL047W
Coding sequence: 203 codons.
Database cross references:
ArrayExpress: P53178
CYGD: YGL047w
EMBL: CAA96749.1
EMBL: Z72569
Ensembl: YGL047W
GeneID: 852835
GenomeReviews: Y13135_GR
HOGENOM: P53178
NMPDR: fig|4932.3.peg.2574

Computed results  

None available yet

Homologs and Orthologs

Homologs in protein families: GL3R1263 GL3R1263.N2
Orthologs: strict determination not possible; homologs must be refined manually

Protein SACE0G04796p  


Protein domain map

Protein length: 202 amino acids
Protein family: GL3R1263
Database cross references:
DIP: DIP:4726N
GermOnline: YGL047W
IntAct: P53178
InterPro: IPR007235
KEGG: sce:YGL047W
LinkHub: P53178
PDB: 2JZC
PDBsum: 2JZC
PIR: S64051
Pfam: PF04101
RefSeq: NP_011468.1
SGD: S000003015
UniProtKB/Swiss-Prot: P53178
UniprotKB: ALG13_YEAST

Computed results for SACE0G04796p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

GO:0043541 UDP-N-acetylglucosamine transferase complex
GO:0042406 extrinsic to endoplasmic reticulum membrane
GO:0006488 dolichol-linked oligosaccharide biosynthetic process
GO:0005829 cytosol
GO:0005634 nucleus
GO:0005624 membrane fraction
GO:0005515 protein binding

Sequence data  


Nucleotide sequence    

>SACE0G04796g.nt
GATAATTGAGGGAGCATGTTCTCTAGCCATCACAAACAGCTCACGGACCATACGGGAACC
TTCGCCGATATACTTTTGTACCAGTTCCGCACCACTGACCCTGATGAATTTACAATCAGT
GTGATGTGCGACAGCTCTTGCCAATAAGGTTTTCCCTGTACCAGGGGGGCCATATAAGAT
GACACCCTTTGGTTGCGCAATACCCAAACTTTCAAAAAGTTCAGGATGTTTTACGGGCAA
TTCAATAACTTCTTTAATCTCCTTTATTTGCTTTGTCAAACCACCAACCATATCGTATGT
GGAATCAGGAACTTTTTCCACCATCATCAACGAAACTAGTGGGTCAGCCTTATTCTCAAG
AACTTTATGCAACATATAAGAGTCACTCCTTAGACAAACTCTTTGAGATGCCTTTAAGTC
CTTCACGTTTATATCTTTTGCAACATCCACGATGTATTTTCCCTCAGGTTGCACTTTAAC
GAGAACTTTTTTGTCAGACACGATCTTTATAACTTCACCCACATAAGATCCAGGTTCCTG
TAATAGACGCAGTTCGTCCTTGATAAAACGTACTTTGTCATTCAATGCATTCCTTTGAGC
TTCCAGTCTGCGAACATTTTCTGTTTTGGAGCGGATCTTTAATTCTGTTTCTTGGATCTT
CTGTTCAAAATATGGTTTGATACCACTTTCGTGGGTTTCTAATACTATATTGGAGGATGT
TACAGCAGCTGTCATTGTCGTGATAGTATCCCACTATACTGTTGTTCCGTTTACATAAAA
CCTAACCTAACTGTTACTGATATTACAACTTTTGCCACCTCGCTCGCATTTTGACAGTTT
TAAAATACGAAAATTTCCGAACAAGAATAAGGGTAGAGAAGTATGCAAAATATGATTTCA
TATTAAAAAACCCAACCGAAGAAAAAGGGAAATAGAAAAACAAGTTTTCAGTCGCAAAAA
GAGGTTAAACAAACGAGTCAGAAGCCAGCTCTTTCAAACAATGGGTATTATTGAAGAAAA
GGCTCTTTTTGTTACGTGTGGGGCAACGGTGCCATTTCCAAAGCTCGTCTCATGTGTGCT
AAGCGACGAATTCTGCCAAGAATTGATTCAATATGGATTCGTACGTCTAATCATTCAGTT
TGGGAGAAACTACAGTTCTGAATTTGAGCATTTAGTGCAAGAACGCGGGGGCCAAAGAGA
AAGCCAAAAAATTCCAATTGACCAGTTTGGCTGTGGCGACACCGCAAGACAGTATGTCCT
GATGAACGGGAAATTAAAGGTGATCGGGTTTGACTTTTCGACCAAGATGCAAAGTATTAT
ACGTGATTATTCAGATTTGGTCATATCACACGCTGGAACGGGCTCTATACTAGATTCTCT
ACGGTTGAATAAACCGTTGATAGTTTGCGTAAACGATTCTTTGATGGATAACCACCAGCA
GCAGATAGCAGACAAGTTTGTAGAGTTGGGCTACGTATGGTCTTGTGCACCCACTGAAAC
AGGTTTGATAGCTGGTTTACGTGCATCTCAAACAGAGAAACTCAAACCATTCCCAGTTTC
TCATAACCCGTCATTTGAGCGATTGCTAGTTGAAACTATATACAGCTAGTTAGTAAGATT
TTAAAAGACGAAAAGAACGGAAAGTAGGACAACTACCAAAAAAAAAGATGGAAGGTTTCT
TTGGTTAGTTAGCAGTATCCGCGTAATGCCTTAGACGTTTTTGATCAGAAAAAAATAAAA
CTTGATTTCGCCCAGGATCGAACTGGGGACGTTCTGCGTGTTAAGCAGATGCCATAACCG
ACTAGACCACGAAACCAGTTTTTTGATGTTTCGTTTAGGACAAGAGTCCTATGAGAGTCC
ACTAAAATTCTAAAAATAATTGTATCAACAACCGTCATGCAGCTGTTGT

Coding sequence    

>SACE0G04796g.cds
ATGGGTATTATTGAAGAAAAGGCTCTTTTTGTTACGTGTGGGGCAACGGTGCCATTTCCA
AAGCTCGTCTCATGTGTGCTAAGCGACGAATTCTGCCAAGAATTGATTCAATATGGATTC
GTACGTCTAATCATTCAGTTTGGGAGAAACTACAGTTCTGAATTTGAGCATTTAGTGCAA
GAACGCGGGGGCCAAAGAGAAAGCCAAAAAATTCCAATTGACCAGTTTGGCTGTGGCGAC
ACCGCAAGACAGTATGTCCTGATGAACGGGAAATTAAAGGTGATCGGGTTTGACTTTTCG
ACCAAGATGCAAAGTATTATACGTGATTATTCAGATTTGGTCATATCACACGCTGGAACG
GGCTCTATACTAGATTCTCTACGGTTGAATAAACCGTTGATAGTTTGCGTAAACGATTCT
TTGATGGATAACCACCAGCAGCAGATAGCAGACAAGTTTGTAGAGTTGGGCTACGTATGG
TCTTGTGCACCCACTGAAACAGGTTTGATAGCTGGTTTACGTGCATCTCAAACAGAGAAA
CTCAAACCATTCCCAGTTTCTCATAACCCGTCATTTGAGCGATTGCTAGTTGAAACTATA
TACAGCTAG

Predicted translation product    

>SACE0G04796g.aa
MGIIEEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQ
ERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGT
GSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPTETGLIAGLRASQTEK
LKPFPVSHNPSFERLLVETIYS*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites