HomePISO0N24235g
similar to uniprot|P32775 Saccharomyces cerevisiae SACE0E01650g GLGB_YEAST GHA1 GLC3 YEL011W Glycogen branching enzyme involved in glycogen accumulation
Element type: CDS
Element length: 2118 nucleotides,
on sense strand of
Piso0N: 2027721..2029838.
Other names:
GNLVRS01_PISO0N24235g
vPISO-ORF21029
Coding sequence: 706 codons.
Element length: 2118 nucleotides,
on sense strand of
Piso0N: 2027721..2029838.
Other names:
GNLVRS01_PISO0N24235g
vPISO-ORF21029
Coding sequence: 706 codons.
Allele data
Allele name: Piso0_005863-2Homologs and Orthologs
Homologs in protein family: GL3R2291Orthologs: strict determination not possible; homologs must be refined manually
Protein PISO0N24235p 
similar to uniprot|P32775 Saccharomyces cerevisiae SACE0E01650g GLGB_YEAST GHA1 GLC3 YEL011W Glycogen branching enzyme involved in glycogen accumulation;
Protein domain map
Database cross references:
Computed results for PISO0N24235p
None available yet
Gene Ontology terms
None available yet
Sequence data
>PISO0N24235g.nt ATGGGGCAATTAGGTATCGAAAATGCTAATGAGCAAATCAAAAAAACCCTTGAGATCGAC CCCTGGTTGGAGCCATTTTCAGGAGCAATAAAGGAAAGAATCAGCAAATTTGGTAAGACA AAGGGTATTCTAGAACAGAACGAAGGGTCTTTGTATGATTTTTCGTTGTCTTATCAGAAG TATGGTCTTCATGCGGATTGGGAGACGGGAGTAATATATGGCAGCGAATATGTTCCCAAT GTGGAGGAGGTGTCATTGGTCGGGGAATTTAACAATTGGGACCCCCAGAGCCACAAGTTT GAGCGTGCCAATGGAATGGGCCTCTGGTCTATCAACATTCCCCCTACTGCGAACAAGGAA TTTGCTATTCCGCATGATAGCAAGATCAAGCTTGCTATGGTTTTGCCCTCCGGCGAGCGA ATTTACCGATTGAGCCCCTGGTTGACTCGAGCGACACAAGAAAAAGATGTGCCAGTGTTC GATGGTAGGTTTTGGAACCCTGTAAAGGCCGATAGGTATGCATTCAAGTATCCCAGACCA ATGTTGGGGGACAGCCAGGGCTTGAGGGTGTATGAGGCACATGTGGGAATATCATCACCC ATGCCCACAATTGCATCCTACAAGCACTTTACCAAGAATGTGCTTCCCTTGATTCACAGA TTGGGGTACAATACGATCCAATTGATGGCAGTAATGGAACATGCGTATTATGCTTCTTTT GGATACCAGATAACCAGTTTTTTTGCAATCTCCTCCAGGTACGGTACACCAGAGGACCTC AAGGAATTAGTAGATGAAGCACACAAGCTAGGCATCATTGTACTTTTAGATGTGGTCCAC TCGCATGCTTCGAAGAATGTTGATGATGGACTAAACATGTTTAATGGAACCGATCACTAT TTGTTCCACGGGGGTAAGAAAGGGATGCACGAGCTTTGGGACTCTCGTCTATTTAATTAT GGAGACTATGAAACGCTACGATTTTTACTTTCCAACCTTCACTTCTATGTTGACACGTAC GGATTCGACGGCTTCCGTTTTGATGGAGTGACGAGCATGTTGTATAAGCACCATGGTATA GGATACGGCTTCTCTGGTGGATATCATGAATACTTTGATGAAAACCTCATTGATTCTGAT GCTATCACTTACTTTATGTTGGCTCATACATTAATGAGAGAGATAGGCGACCGTGAAAGA ATCAGACTCTATTCAGTAGCAGAAGATGTTAGTGGTATGCCTACCCTTTGCCTACCATTA TCCATAGGTGGTATTGGATTTGACTACAGATTATCAATGGCCATACCAGACATGTGGATA AAGCTATTGAAGCACAGTAGAGACGAAGACTGGGACCTAGGTAGTATCTGTTTCACTCTT ACAAACAGAAGATACAAGGAAAAATGCATTGGATACTGTGAGTCTCATGATCAAGCTTTG GTGGGAGACAAGAGTATCGCTTTCTGGTTAATGGACAAAGAAATGTACACAAACATGTCC ACACTAACTCCTTTGACACCGGTCGTTGATCGAGGTATTGCATTACACAAATTGATAAGG CTTTTGACTTTTTCGCTTGGTGGTGAAGCTTACTTGAATTTTGAGGGGAATGAGTTCGGC CATCCCGAATGGCTTGACTTTCCCAGAGTCGGAAATGGCGAATCTTTTCATTATGCAAGG AGACAGTTCAATCTCGTTGAAGACGATCTCCTCAGATACAAATTTCTATTCAACTTTGAT GCATCTATGCAGCATCTAGATTCAAAATATAATATTTTAAACAGTCCACAGGCATACATA TCTTTGAAACATGAGGGTGATAAAGTAGTTGTTTTTGAAAGAAATGGTTTGCTTTTTATT TTCAATTTTCACCCTACTAAATCGTATGTCGATTACAAAGTAGGGGTCGATACTCCTGGC GTTTATCAAATTGTTTTAAATTCAGACCGGTCTGAATATGGAGGACATAACAGAATAGAA GAATTTAACCCTTCTACAGGAAAGCCATTAGAGTTCTTTACTCAAAATGAACCATGGAAT GACAGAAGAAACTCCTTAATGTGCTACATACCTACTAGAACTGCAATTGTCTTACAACTC AAAGAGAAAATCGTTTAA
>PISO0N24235g.cds ATGGGGCAATTAGGTATCGAAAATGCTAATGAGCAAATCAAAAAAACCCTTGAGATCGAC CCCTGGTTGGAGCCATTTTCAGGAGCAATAAAGGAAAGAATCAGCAAATTTGGTAAGACA AAGGGTATTCTAGAACAGAACGAAGGGTCTTTGTATGATTTTTCGTTGTCTTATCAGAAG TATGGTCTTCATGCGGATTGGGAGACGGGAGTAATATATGGCAGCGAATATGTTCCCAAT GTGGAGGAGGTGTCATTGGTCGGGGAATTTAACAATTGGGACCCCCAGAGCCACAAGTTT GAGCGTGCCAATGGAATGGGCCTCTGGTCTATCAACATTCCCCCTACTGCGAACAAGGAA TTTGCTATTCCGCATGATAGCAAGATCAAGCTTGCTATGGTTTTGCCCTCCGGCGAGCGA ATTTACCGATTGAGCCCCTGGTTGACTCGAGCGACACAAGAAAAAGATGTGCCAGTGTTC GATGGTAGGTTTTGGAACCCTGTAAAGGCCGATAGGTATGCATTCAAGTATCCCAGACCA ATGTTGGGGGACAGCCAGGGCTTGAGGGTGTATGAGGCACATGTGGGAATATCATCACCC ATGCCCACAATTGCATCCTACAAGCACTTTACCAAGAATGTGCTTCCCTTGATTCACAGA TTGGGGTACAATACGATCCAATTGATGGCAGTAATGGAACATGCGTATTATGCTTCTTTT GGATACCAGATAACCAGTTTTTTTGCAATCTCCTCCAGGTACGGTACACCAGAGGACCTC AAGGAATTAGTAGATGAAGCACACAAGCTAGGCATCATTGTACTTTTAGATGTGGTCCAC TCGCATGCTTCGAAGAATGTTGATGATGGACTAAACATGTTTAATGGAACCGATCACTAT TTGTTCCACGGGGGTAAGAAAGGGATGCACGAGCTTTGGGACTCTCGTCTATTTAATTAT GGAGACTATGAAACGCTACGATTTTTACTTTCCAACCTTCACTTCTATGTTGACACGTAC GGATTCGACGGCTTCCGTTTTGATGGAGTGACGAGCATGTTGTATAAGCACCATGGTATA GGATACGGCTTCTCTGGTGGATATCATGAATACTTTGATGAAAACCTCATTGATTCTGAT GCTATCACTTACTTTATGTTGGCTCATACATTAATGAGAGAGATAGGCGACCGTGAAAGA ATCAGACTCTATTCAGTAGCAGAAGATGTTAGTGGTATGCCTACCCTTTGCCTACCATTA TCCATAGGTGGTATTGGATTTGACTACAGATTATCAATGGCCATACCAGACATGTGGATA AAGCTATTGAAGCACAGTAGAGACGAAGACTGGGACCTAGGTAGTATCTGTTTCACTCTT ACAAACAGAAGATACAAGGAAAAATGCATTGGATACTGTGAGTCTCATGATCAAGCTTTG GTGGGAGACAAGAGTATCGCTTTCTGGTTAATGGACAAAGAAATGTACACAAACATGTCC ACACTAACTCCTTTGACACCGGTCGTTGATCGAGGTATTGCATTACACAAATTGATAAGG CTTTTGACTTTTTCGCTTGGTGGTGAAGCTTACTTGAATTTTGAGGGGAATGAGTTCGGC CATCCCGAATGGCTTGACTTTCCCAGAGTCGGAAATGGCGAATCTTTTCATTATGCAAGG AGACAGTTCAATCTCGTTGAAGACGATCTCCTCAGATACAAATTTCTATTCAACTTTGAT GCATCTATGCAGCATCTAGATTCAAAATATAATATTTTAAACAGTCCACAGGCATACATA TCTTTGAAACATGAGGGTGATAAAGTAGTTGTTTTTGAAAGAAATGGTTTGCTTTTTATT TTCAATTTTCACCCTACTAAATCGTATGTCGATTACAAAGTAGGGGTCGATACTCCTGGC GTTTATCAAATTGTTTTAAATTCAGACCGGTCTGAATATGGAGGACATAACAGAATAGAA GAATTTAACCCTTCTACAGGAAAGCCATTAGAGTTCTTTACTCAAAATGAACCATGGAAT GACAGAAGAAACTCCTTAATGTGCTACATACCTACTAGAACTGCAATTGTCTTACAACTC AAAGAGAAAATCGTTTAA
>PISO0N24235g.aa MGQLGIENANEQIKKTLEIDPWLEPFSGAIKERISKFGKTKGILEQNEGSLYDFSLSYQK YGLHADWETGVIYGSEYVPNVEEVSLVGEFNNWDPQSHKFERANGMGLWSINIPPTANKE FAIPHDSKIKLAMVLPSGERIYRLSPWLTRATQEKDVPVFDGRFWNPVKADRYAFKYPRP MLGDSQGLRVYEAHVGISSPMPTIASYKHFTKNVLPLIHRLGYNTIQLMAVMEHAYYASF GYQITSFFAISSRYGTPEDLKELVDEAHKLGIIVLLDVVHSHASKNVDDGLNMFNGTDHY LFHGGKKGMHELWDSRLFNYGDYETLRFLLSNLHFYVDTYGFDGFRFDGVTSMLYKHHGI GYGFSGGYHEYFDENLIDSDAITYFMLAHTLMREIGDRERIRLYSVAEDVSGMPTLCLPL SIGGIGFDYRLSMAIPDMWIKLLKHSRDEDWDLGSICFTLTNRRYKEKCIGYCESHDQAL VGDKSIAFWLMDKEMYTNMSTLTPLTPVVDRGIALHKLIRLLTFSLGGEAYLNFEGNEFG HPEWLDFPRVGNGESFHYARRQFNLVEDDLLRYKFLFNFDASMQHLDSKYNILNSPQAYI SLKHEGDKVVVFERNGLLFIFNFHPTKSYVDYKVGVDTPGVYQIVLNSDRSEYGGHNRIE EFNPSTGKPLEFFTQNEPWNDRRNSLMCYIPTRTAIVLQLKEKIV*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/PISO/PISO0N24235p