HomePISO0B09703g
similar to uniprot|Q03957 Saccharomyces cerevisiae SACE0K01936g CTK1_YEAST CTK1 YKL139W Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) which phosphorylates both RNA pol II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing and ribosomal protein Rps2p to increase translational fidelity
Element type: CDS
Element length: 1725 nucleotides,
on anti-sense strand of
Piso0B: complement(782752..784476).
Other names:
GNLVRS01_PISO0B09703g
vPISO-ORF02106
Coding sequence: 575 codons.
Element length: 1725 nucleotides,
on anti-sense strand of
Piso0B: complement(782752..784476).
Other names:
GNLVRS01_PISO0B09703g
vPISO-ORF02106
Coding sequence: 575 codons.
Allele data
Allele name: Piso0_000451-1Homologs and Orthologs
Homologs in protein family: GL3M4606Orthologs: strict determination not possible; homologs must be refined manually
Protein PISO0B09703p 
Protein domain map
Database cross references:
Computed results for PISO0B09703p
None available yet
Gene Ontology terms
None available yet
Sequence data
>PISO0B09703g.nt ATGTCGGAAAAGTACAGACCACCCAGTGGACCTAGGTCTACCCGGGGTTTCAATGATGAT AAGAGAGGACCAAGGCCTCCAATCTCCAGCAACAATAACAGTAGTAGAGGCAATTACAAA CAGTCATATGGAGGGAGAGACTCATATGCACAAGGGGGTAGCAGGTACTATGATGATAGA GACAGCTACAGAGGCTCTGGCAGCGAAAGAATGGATTACTACTCAAGTGGCCGTGGGCGC CCTTCAGGTCCACCTAATTACAGAAACAGCGACAGGGATTTCTATCGTTCTAGCTATAAG AGGCCATATCCAAGTGAACCAAAGGGATTTAGAGGACCTGAGAGTAGCAGGAAGAGACCT GATAGAAAAGACAACTATGGCACTCCCTCGGCTTCCACAAGCAGTGGTGAAAGACCGGGT GCATACAAATCAGGGCCACCAGAAGGAGCTGGTCCTGGTAAGATTAGCTTGAACAATTTG CCTAAAGGGCCCAGAGTCTATCATAATGGAGGTAGAGGCAGAGGAAGAGGTGGATTCCCA AGAGGTGACCGCATGGGTGGTAGACCTGCGCCAAAACCTATCGTTAAGCTTACCAAAGCT CAGACATATCTGATTCAGTTTTCCAAGGCTGCAGAAGTTTACAAGCGTGTGCAGCAGGTT GGCGAAGGTACTTACGGTAAGGTTTACAAGGCTAGGAATACTATAACAAAAGAGTATGTT GCATTAAAGAAATTAAGATTGGAGTCCGAAAGAGAAGGTTTCCCTATAACTGCAATGAGA GAAATCAAGCTACTTCAATCTTTTGACCACGAAAATGTTGTTGGACTATTAGAAATGATG GTAGAGCATAATCAGATATACATGATCTTTGATTATATGGACCACGACTTGACTGGTCTA TTAACACACCCTGATTTAAAGCTTGCTGAAAGCCATAAAAAGTTTATATTCAAACAGCTT CTAGAAGGACTTAATTATTTGCATAAACGGAGAGTCATCCACAGAGATATAAAAGGTTCA AATATACTTCTTGACAGTATTGGGAGATTAAAGATAGCAGATTTTGGGTTGGCCAGGACA ATGAGTGTGCTCAACGATGGAGAGACCCCTGACTATACTAATCGAGTAATTACCATATGG TACCGTCCTCCTGAACTTCTTTTAGGTTCTACTGTTTATGGGCGAGAGGTTGACGTGTGG GGAGTTGGGTGTTTATTGATAGAGTTGTACACACGAACTGCAGCCTTTCAGGGATTCGAT GAAGTGGGCCAATTGCACAAGATTTTCAATTTAATGGGTACGCCCTCATTAGAGGACTGG CCTGACATAGAAAACCTCCCATGGTTTGAGATGTTGAAGCCAAAAATCAATAAACTGAGT CTGTTTGAGAAAGAATATAGGCCAGTTATGTCGGAGCACAGTTTTGATTTGGCAGAAAAA CTCCTCAAGTTCAGCCCAGAGAAGCGCTTGACTGCTGAAGAAGCATTACTGCACCCTTAC TTCACCGAGGAACCCAGGGAGGAACCACTTACGTTCCTAAAAGACGTAAAGGGCGAATGG CACGAATTCGAGACAAAGAAGAGAAGAAGAAAAGAGCGCAAGAGATTGCAGGAGGCGAAA TTGGCCAACGCGCAGCTGTCTGTTGTGCAGACCAACAACGAAGTTTCACTTCAGTCTGTT CCTGACTCGGTGATCGCGCCGGACGGCCCCAAGGAACAGCAATAG
>PISO0B09703g.cds ATGTCGGAAAAGTACAGACCACCCAGTGGACCTAGGTCTACCCGGGGTTTCAATGATGAT AAGAGAGGACCAAGGCCTCCAATCTCCAGCAACAATAACAGTAGTAGAGGCAATTACAAA CAGTCATATGGAGGGAGAGACTCATATGCACAAGGGGGTAGCAGGTACTATGATGATAGA GACAGCTACAGAGGCTCTGGCAGCGAAAGAATGGATTACTACTCAAGTGGCCGTGGGCGC CCTTCAGGTCCACCTAATTACAGAAACAGCGACAGGGATTTCTATCGTTCTAGCTATAAG AGGCCATATCCAAGTGAACCAAAGGGATTTAGAGGACCTGAGAGTAGCAGGAAGAGACCT GATAGAAAAGACAACTATGGCACTCCCTCGGCTTCCACAAGCAGTGGTGAAAGACCGGGT GCATACAAATCAGGGCCACCAGAAGGAGCTGGTCCTGGTAAGATTAGCTTGAACAATTTG CCTAAAGGGCCCAGAGTCTATCATAATGGAGGTAGAGGCAGAGGAAGAGGTGGATTCCCA AGAGGTGACCGCATGGGTGGTAGACCTGCGCCAAAACCTATCGTTAAGCTTACCAAAGCT CAGACATATCTGATTCAGTTTTCCAAGGCTGCAGAAGTTTACAAGCGTGTGCAGCAGGTT GGCGAAGGTACTTACGGTAAGGTTTACAAGGCTAGGAATACTATAACAAAAGAGTATGTT GCATTAAAGAAATTAAGATTGGAGTCCGAAAGAGAAGGTTTCCCTATAACTGCAATGAGA GAAATCAAGCTACTTCAATCTTTTGACCACGAAAATGTTGTTGGACTATTAGAAATGATG GTAGAGCATAATCAGATATACATGATCTTTGATTATATGGACCACGACTTGACTGGTCTA TTAACACACCCTGATTTAAAGCTTGCTGAAAGCCATAAAAAGTTTATATTCAAACAGCTT CTAGAAGGACTTAATTATTTGCATAAACGGAGAGTCATCCACAGAGATATAAAAGGTTCA AATATACTTCTTGACAGTATTGGGAGATTAAAGATAGCAGATTTTGGGTTGGCCAGGACA ATGAGTGTGCTCAACGATGGAGAGACCCCTGACTATACTAATCGAGTAATTACCATATGG TACCGTCCTCCTGAACTTCTTTTAGGTTCTACTGTTTATGGGCGAGAGGTTGACGTGTGG GGAGTTGGGTGTTTATTGATAGAGTTGTACACACGAACTGCAGCCTTTCAGGGATTCGAT GAAGTGGGCCAATTGCACAAGATTTTCAATTTAATGGGTACGCCCTCATTAGAGGACTGG CCTGACATAGAAAACCTCCCATGGTTTGAGATGTTGAAGCCAAAAATCAATAAACTGAGT CTGTTTGAGAAAGAATATAGGCCAGTTATGTCGGAGCACAGTTTTGATTTGGCAGAAAAA CTCCTCAAGTTCAGCCCAGAGAAGCGCTTGACTGCTGAAGAAGCATTACTGCACCCTTAC TTCACCGAGGAACCCAGGGAGGAACCACTTACGTTCCTAAAAGACGTAAAGGGCGAATGG CACGAATTCGAGACAAAGAAGAGAAGAAGAAAAGAGCGCAAGAGATTGCAGGAGGCGAAA TTGGCCAACGCGCAGCTGTCTGTTGTGCAGACCAACAACGAAGTTTCACTTCAGTCTGTT CCTGACTCGGTGATCGCGCCGGACGGCCCCAAGGAACAGCAATAG
>PISO0B09703g.aa MSEKYRPPSGPRSTRGFNDDKRGPRPPISSNNNSSRGNYKQSYGGRDSYAQGGSRYYDDR DSYRGSGSERMDYYSSGRGRPSGPPNYRNSDRDFYRSSYKRPYPSEPKGFRGPESSRKRP DRKDNYGTPSASTSSGERPGAYKSGPPEGAGPGKISLNNLPKGPRVYHNGGRGRGRGGFP RGDRMGGRPAPKPIVKLTKAQTYLIQFSKAAEVYKRVQQVGEGTYGKVYKARNTITKEYV ALKKLRLESEREGFPITAMREIKLLQSFDHENVVGLLEMMVEHNQIYMIFDYMDHDLTGL LTHPDLKLAESHKKFIFKQLLEGLNYLHKRRVIHRDIKGSNILLDSIGRLKIADFGLART MSVLNDGETPDYTNRVITIWYRPPELLLGSTVYGREVDVWGVGCLLIELYTRTAAFQGFD EVGQLHKIFNLMGTPSLEDWPDIENLPWFEMLKPKINKLSLFEKEYRPVMSEHSFDLAEK LLKFSPEKRLTAEEALLHPYFTEEPREEPLTFLKDVKGEWHEFETKKRRRKERKRLQEAK LANAQLSVVQTNNEVSLQSVPDSVIAPDGPKEQQ*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://192.168.122.177/elt/PISO/PISO0B09703g