HomeKLTH0H07920g
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062W LCB2 Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1689 nucleotides,
on anti-sense strand of
Klth0H: complement(693778..695466).
Other names:
KLTH-ORF1169
Coding sequence: 563 codons.
Element length: 1689 nucleotides,
on anti-sense strand of
Klth0H: complement(693778..695466).
Other names:
KLTH-ORF1169
Coding sequence: 563 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.F3 GL3C0100.N1Orthologs by synteny: ZYRO0G09152g SAKL0H19272g KLLA0D02134g
Protein KLTH0H07920p 
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062W LCB2 Component of serine palmitoyltransferase responsible along with Lcb1p for the first committed step in sphingolipid synthesis which is the condensation of serine with palmitoyl-CoA to form 3- ketosphinganine
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>KLTH0H07920g.nt CTAGAAGCATTCAAAGAGAGGGCGTCACAGTAAAGCCACATTTTTGGCTTCCACTTTGTC TGCCAGTGATTAAGAAAAATATCGGGAAGTAGCATACCAACAAACAATACGTTATGTCAC ACCTCATTGAAAATGGGTGATTAGCTCGGAGCACATGCGAGGGCACTGATAACAGTTGGG AGGGCAGCTCGAAAAATTAAGTCACAGGGCCCATAGGATCAAGCGCTGGAGCTACCTATG TATTCAGAATTAGAACGCCTCGTTTAGCATGGGCATTTACCTGAACATTCGAGCTGTCCC CTTTATGATCTAACTAAAAGCTTCCTATGGCTACGAACTCGAACTAAAATTATCTAAAGA AAGACCCGGTTTAGTGTTTCCTCTCAAAAACCTTTTCGAGAAAGCAAAATAATCCTTTGA ATCCCCCAATCATGGTAAACAGCAGTCACTCCGGTCATACAAAATGGGCAAAAGGATCGC GGTTTTTCTTTGGATTGCATTAAAAGCACGTTATTTTTTGCACGTCTTTTCAAGCTTCGA AGAAGCAGCACAGGTAATTCAGCAGTGCTAACGGATCAAACTGGGGTATTATTCAGTTCT CTGCTGAGCCAATGGGTAAACATTTACAAGAGCAGGAGCAGGAGAGTTGCCAAAGTCACA ACAATCTGCCTTCAAAGATAAATACCAGCTACAATATTTCCATCCTATGCCAGTATCAGC TTAGTTTAATACTTCATATAATGTAACATACACTTTACCCTTGATTTCGCAGGAGCCAAG AGCATATTTCTGAAGTCTTGACGAAGTGTGCGTAAAGCGATCTCATGCTTCGATTCACGT GGTTCAGAAAGGTCTTGTGGGAGAAAAGGTCTTTTCGCGGACGCACAGTATGCTCGTACT CTCCTCGGCCGTTATTAGTGCTACGTTGGTTGATGAAAACATCACGAAGAGCAGCTCCTG GTGAGAACCTATTCAAAAAACCGTAGCCGAGGAGTGCGCAATGAGCTCCATTTCAAATAC CAAAGTGCCTCTTTTTGGGCCCGCCAAGCAATCGGTCGAGCACAAGAAGAATAATGAGTT TGGCCCCCTGACTTCTGATGAATATCTGTATCAAGTCCATTCTCGGAACGGAGAACCTTT ACGGGATCCCGTCCTGGACGCACCTCCTTACTATGTGGTTGTTATCACATACTTGAACTA CCTGATACTTATTATACTCGGGCATATCCATGACTATCTGGGAATGACATTCCAGAAAGA AAAGCACCGCGAGCTTTTGGAAAAGGATGGTCTCGCTCCGTGGTTCTCAAAATTTGAGAG TTTTTACGTGAGGAGGCTGAAGCTAAGGATTGACGACTGTTTCTCTAGACCAACCACTGG AGTTCCAGGCAGATTCATTACATGTATTGACAGAATTTCCCATGACCTTAACAGTTACTA CACTCACCCAGGAACCACCACCATGTGTCTAAATCTATCTTCGTACAACTACTTGGGATT CGCACAGAGCGAAGGCAAATGTACAGACAACGCTATTGCAAGTGTCGACAAATATGGCCT GACCGCAGGGGGTCCTAGAGCCCAGGCGGGTACTTCAGACCTTCATCTGGAAACCGAGAA GCTTGTTGCGAGATTTGTTGGCAAGGAAGACGCGATGGTGTTCTCTATGGGTTACAGTAC AAATGCCAATTTCTTCAATTCTATCTTGGACTCCAAATGTCTCGTCATTTCCGATGAGCT TAACCACACTTCTATTAGAACCGGTGTCCGTTTATCTGGTACCGCGGTGAAGGCGTTTAA GCACAATGACATGGAGGCTTTGGAGAAATTGATTAAGGAGCAGATTGTTCAGGGTCAGCC TAAGACTCACAGGCCTTGGAAGAAAATTTTGATTTGCGTAGAAGGCCTCTTTTCCATGGA GGGAACAATGTGCAATCTGCCCAAGTTAATCGAATTGAAAAACAAATATAAATGCTATCT TTTTGTGGATGAGGCGCACTCTATTGGTGCTATAGGCCCTCAAGGTCGCGGAGTGTGTGA CTACTTTGGTATTAACCCTTCCGAGGTCGATATTATGATGGGAACTTTCACAAAATCTTT CGGCGCGGCCGGCGGCTACATTGCAGCTGATAAGAAGGTGATTGACAAGTTGAGGTGTGA CCTGACAATTCCAAATTACGGTGAATCTGTTCCTGCCCCCATTCTCGCGCAAACTTCTGC TTCTCTTCGGATCATCACTGGTGAACTCAACCCAGGCGAAGGTCTCGAAAGACTGCAACG TATTGCTTTCAACTCGAGATATCTAAGACTAGCTTTGCAAAGATTGGGCTTCATTGTTTA TGGCATTGCTGACTCGCCAGTGGTACCCATGCTATTGTATGCTCCTTCCAAGATGCCAGC TTTTTCAAGAATGATGTTGCAAAGAAAGATAGCTGTAGTGGTTGTGGCATACCCCGCGAC TCCATTGATCGAGTCTCGAGTTAGATTCTGCGTTTCTGCTGCATTAACCAAAGAGGACAT AGACTACCTTCTACGTCATGTCAACGAGGTTGGCGAAAAGTTATTCCTCAAGGTGAGCAC CGGCAAAGCAGGTGGTTCGCTCGACGGCAAACCTCCAAGGTGGGATATTGAAGAGGTCAT CAGGCGTACACCATCAGACTGCAAGGATGATAAGTACTTTTTGATATAGAGAAGCAAGGC GCTCAAGAATATATTTAAAAGCATGGGAGTTGAAACTCGAAAGGAATCATGCAGTTCAGC ATTTTAAATCAAGCAGATGTTAAGAACTACTGTTGACATTTATACGGTTGTGACATTGGA CGGCCCTTTCTTGAAAAGGTGAAAAACATAACCTCCCCCATATGGTGGTCTAACTACAAT GCCCCAGCGTATATAGACGAAACAATTAAAGATGTCATCGCTGTACCATATTTCCACTGA AACGAAAAACACTATCAGGAAGTACCGTACCGCCACAGCTAGATCTGAG
>KLTH0H07920g.cds ATGAGCTCCATTTCAAATACCAAAGTGCCTCTTTTTGGGCCCGCCAAGCAATCGGTCGAG CACAAGAAGAATAATGAGTTTGGCCCCCTGACTTCTGATGAATATCTGTATCAAGTCCAT TCTCGGAACGGAGAACCTTTACGGGATCCCGTCCTGGACGCACCTCCTTACTATGTGGTT GTTATCACATACTTGAACTACCTGATACTTATTATACTCGGGCATATCCATGACTATCTG GGAATGACATTCCAGAAAGAAAAGCACCGCGAGCTTTTGGAAAAGGATGGTCTCGCTCCG TGGTTCTCAAAATTTGAGAGTTTTTACGTGAGGAGGCTGAAGCTAAGGATTGACGACTGT TTCTCTAGACCAACCACTGGAGTTCCAGGCAGATTCATTACATGTATTGACAGAATTTCC CATGACCTTAACAGTTACTACACTCACCCAGGAACCACCACCATGTGTCTAAATCTATCT TCGTACAACTACTTGGGATTCGCACAGAGCGAAGGCAAATGTACAGACAACGCTATTGCA AGTGTCGACAAATATGGCCTGACCGCAGGGGGTCCTAGAGCCCAGGCGGGTACTTCAGAC CTTCATCTGGAAACCGAGAAGCTTGTTGCGAGATTTGTTGGCAAGGAAGACGCGATGGTG TTCTCTATGGGTTACAGTACAAATGCCAATTTCTTCAATTCTATCTTGGACTCCAAATGT CTCGTCATTTCCGATGAGCTTAACCACACTTCTATTAGAACCGGTGTCCGTTTATCTGGT ACCGCGGTGAAGGCGTTTAAGCACAATGACATGGAGGCTTTGGAGAAATTGATTAAGGAG CAGATTGTTCAGGGTCAGCCTAAGACTCACAGGCCTTGGAAGAAAATTTTGATTTGCGTA GAAGGCCTCTTTTCCATGGAGGGAACAATGTGCAATCTGCCCAAGTTAATCGAATTGAAA AACAAATATAAATGCTATCTTTTTGTGGATGAGGCGCACTCTATTGGTGCTATAGGCCCT CAAGGTCGCGGAGTGTGTGACTACTTTGGTATTAACCCTTCCGAGGTCGATATTATGATG GGAACTTTCACAAAATCTTTCGGCGCGGCCGGCGGCTACATTGCAGCTGATAAGAAGGTG ATTGACAAGTTGAGGTGTGACCTGACAATTCCAAATTACGGTGAATCTGTTCCTGCCCCC ATTCTCGCGCAAACTTCTGCTTCTCTTCGGATCATCACTGGTGAACTCAACCCAGGCGAA GGTCTCGAAAGACTGCAACGTATTGCTTTCAACTCGAGATATCTAAGACTAGCTTTGCAA AGATTGGGCTTCATTGTTTATGGCATTGCTGACTCGCCAGTGGTACCCATGCTATTGTAT GCTCCTTCCAAGATGCCAGCTTTTTCAAGAATGATGTTGCAAAGAAAGATAGCTGTAGTG GTTGTGGCATACCCCGCGACTCCATTGATCGAGTCTCGAGTTAGATTCTGCGTTTCTGCT GCATTAACCAAAGAGGACATAGACTACCTTCTACGTCATGTCAACGAGGTTGGCGAAAAG TTATTCCTCAAGGTGAGCACCGGCAAAGCAGGTGGTTCGCTCGACGGCAAACCTCCAAGG TGGGATATTGAAGAGGTCATCAGGCGTACACCATCAGACTGCAAGGATGATAAGTACTTT TTGATATAG
>KLTH0H07920g.aa MSSISNTKVPLFGPAKQSVEHKKNNEFGPLTSDEYLYQVHSRNGEPLRDPVLDAPPYYVV VITYLNYLILIILGHIHDYLGMTFQKEKHRELLEKDGLAPWFSKFESFYVRRLKLRIDDC FSRPTTGVPGRFITCIDRISHDLNSYYTHPGTTTMCLNLSSYNYLGFAQSEGKCTDNAIA SVDKYGLTAGGPRAQAGTSDLHLETEKLVARFVGKEDAMVFSMGYSTNANFFNSILDSKC LVISDELNHTSIRTGVRLSGTAVKAFKHNDMEALEKLIKEQIVQGQPKTHRPWKKILICV EGLFSMEGTMCNLPKLIELKNKYKCYLFVDEAHSIGAIGPQGRGVCDYFGINPSEVDIMM GTFTKSFGAAGGYIAADKKVIDKLRCDLTIPNYGESVPAPILAQTSASLRIITGELNPGE GLERLQRIAFNSRYLRLALQRLGFIVYGIADSPVVPMLLYAPSKMPAFSRMMLQRKIAVV VVAYPATPLIESRVRFCVSAALTKEDIDYLLRHVNEVGEKLFLKVSTGKAGGSLDGKPPR WDIEEVIRRTPSDCKDDKYFLI*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/KLTH/KLTH0H07920p