KLLA0B09240g

highly similar to uniprot|P31244 Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair

Genomic environment map

Element type: CDS
Element length: 2397 nucleotides,
on anti-sense strand of
Klla0B: complement(810178..812574).
Coding sequence: 799 codons.

Database cross references:
EMBL: CR382122
GeneID: 2897376
HOGENOM: Q6CVU9

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0553
Consensus family of 13 members, scrltkgdy (1 1 1 2 1 1 1 2 3)
13-member family, phyletic pattern sczltkgdy, profile (1 1 1 2 1 1 1 2 3)
Proteins: SACE0B05126p CAGL0K07766p ZYRO0C16544p SAKL0B08008p SAKL0E09658p KLTH0F10406p KLLA0B09240p ERGO0D01386p DEHA2D07942p DEHA2G18722p YALI0E04136p YALI0F01232p YALI0F05698p
Search in: Génolevures Google

Génolevures family GL3C0553.F1
Five-SONS subgroup of a Consensus family
5-member family, phyletic pattern --zltkg--, profile (0 0 1 1 1 1 1 0 0)
Proteins: ZYRO0C16544p SAKL0B08008p KLTH0F10406p KLLA0B09240p ERGO0D01386p
Search in: Génolevures Google

Génolevures family GL3C0553.N1
Nine-SONS subgroup of a Consensus family
11-member family, phyletic pattern sczltkgdy, profile (1 1 1 2 1 1 1 1 2)
Proteins: SACE0B05126p CAGL0K07766p ZYRO0C16544p SAKL0B08008p SAKL0E09658p KLTH0F10406p KLLA0B09240p ERGO0D01386p DEHA2D07942p YALI0E04136p YALI0F01232p
Search in: Génolevures Google

Génolevures element ZYRO0C16544g
highly similar to uniprot\|P31244 Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair
Other name: ZYRO-ORF5898
Orthologs: SAKL0B08008g KLTH0F10406g KLLA0B09240g ERGO0D01386g
Homologs: in families GL3C0553 GL3C0553.F1 GL3C0553.N1
Search in: Génolevures EMBL Google by name Google by description

Génolevures element SAKL0B08008g
similar to uniprot\|P31244 Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair
Other name: SAKL-ORF13715
Orthologs: ZYRO0C16544g KLTH0F10406g KLLA0B09240g ERGO0D01386g
Homologs: in families GL3C0553 GL3C0553.F1 GL3C0553.N1
Search in: Génolevures EMBL Google by name Google by description

Génolevures element KLTH0F10406g
highly similar to uniprot\|P31244 Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair
Other name: KLTH-ORF6352
Orthologs: ZYRO0C16544g SAKL0B08008g KLLA0B09240g ERGO0D01386g
Homologs: in families GL3C0553 GL3C0553.F1 GL3C0553.N1
Search in: Génolevures EMBL Google by name Google by description

Génolevures element ERGO0D01386g
Syntenic homolog of Saccharomyces cerevisiae YBR114W (RAD16)
Other names: ADL345C AGOS_ADL345C
Orthologs: ZYRO0C16544g SAKL0B08008g KLTH0F10406g KLLA0B09240g
Homologs: in families GL3C0553 GL3C0553.F1 GL3C0553.N1
Search in: Génolevures EMBL Google by name Google by description

Homologs in protein families: GL3C0553 GL3C0553.F1 GL3C0553.N1
Orthologs by synteny: ZYRO0C16544g SAKL0B08008g KLTH0F10406g ERGO0D01386g

Protein KLLA0B09240p

highly similar to uniprot|P31244 Saccharomyces cerevisiae YBR114W RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair subunit of Nucleotide Excision Repair Factor 4 (NEF4) member of the SWI/SNF family

Protein domain map

Protein length: 798 amino acids
Protein family: GL3C0553

Database cross references:
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
KEGG: kla:KLLA0B09240g
PROSITE: PS00518
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00097
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_451940.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6CVU9
UniprotKB: Q6CVU9_KLULA

Computed results for KLLA0B09240p

Blastp Genolevures

Blastp Uniprot

Gene Ontology terms

GO:0008270	zinc ion binding
GO:0005524	ATP binding
GO:0005515	protein binding
GO:0004386	helicase activity
GO:0003677	DNA binding

Sequence data

>KLLA0B09240g.nt
ATCATGGAAGAAACGATAAAATATCACAGGATTCTTGCCTTCTTCTATTACGAATCAAAA
ACTCGAGGGGTGATAATACGAAGTGGAGGGAGGCGATGAATTCACCCTGACCGGGGAAAA
AAAAACTGATGTCTGTGTTCGTGTTATCTGCTGCAAACACTTCTCTGTTGGATTTTCAGT
GGAACAGAGGCAGGTAAAGTATGCAAAGCATTGGCGCTCGCACCACCATGTTAATCAGGC
TTACTTCATCATTGCTTTTTCTTTTTTTCTACTGTTTCCTTTCTTTCTCTCAGCTGTAAG
TTTCTGTGTGTGAATGTTCGTTTCTATCTTTTTTTTTTCCCTCGAGTGCTTAAGAATTGC
CTTGGGGCTAATTCTAATGATATTACGGTATGCGATTTGCCAGATTCAGCAAATATGCGA
GTCGTACGTTGCTTCTGGGACGAGTTTGTGATGATGGCTTGAGTCGACGTTTTTTTCGAA
AGAAAAAAAAAAAATATTTCGTTACCTTCGCATAACAGCCGAGACGGTATGACAGCAACA
CCCTTGTATACCATGGAGTGAGCGAAGACGCGTGGTAGTGTACAGTGTAGAGCGTACGGT
TTTTATTCCTATGAATGAGCCACATCTTTTGGTCAATTGGTCACGTGATCATTCTGATCT
TGTTGTTTCTCCGAAAGAAATATTGAGGTACGTACGTCACCTTGGCAAGTTTCTCCGCCC
GGAACAACTCTGATCTTGATTAAAAAGAAACGACTGCATTTTCCTCGAAAAAGAAAAGGT
ATTGATGTGATTTTCTACATGGCTAAACATTTACCTATGATGATGGATCCTGATTCATTT
CTGATGAAAAAAGCGTTTGCTGAAGCCCGAAATACTACAAAGGCTAACCTTAATACATTG
TTGCAAGCTTGGAGATACTGATTAGCATCAGCAAATTATAAGAATACACGCATCAAACAA
GGGAACTTGCACTGATCTCTGAGTTGAAAATAAGATGACGATGGAGGAAGGTGGGTTCAT
CAGAAGGACAAGGCAGAGCGGGAACCGGACTCGAACTGCCAAGAAGAATGTCGTATACAT
TGAATCAAGTTCAGGTGAGTCCGAGGATGAGCCATTAGTAAAGAAAGAAATTAAGAGCAA
TAAGGGTAACGCAAAAGCCAATGACAAGGGCAAGTGCAAAACCAAGGGCACAACTAAGGC
AAACCGAAATTTGGATTCGGATTTAGAGTATGATGATTCTTTGGTTCTCTTATCGGATCA
GACGGACAGATCTGGTGATGAATCAAGTGATGAGCTCAAACGTGAACAGGTAGTCGAACT
GATATCCTCTTCTGATGATGATGAACCTCTGCAAAATGGACCGCAAAAGAAGAAGAGAAA
GGCTAATGGTAGGGCTGGTGGTGCCACTGCTACTAAGAAGAAGCCGACAAAACCCAAGAT
CTCTCCTTTCGAAAGAAACACAGCAAAGTTGTATGCTCATCATTCAGAACTTATCGATGT
GTTCAAAAAATTACAGGAATCGCCGATACGGCAGGTGGAAAGAGCTCCTCAGCCTGATGG
TATGGCCATTAGATTATTACCTTTTCAGTTGGAAGGTTTGCACTGGTTGCAACAACAAGA
AGAATCGGATTATAATGGTGGTGTGCTTGCTGATGAGATGGGTATGGGTAAAACCATACA
AACGATAGCTTTGCTGATGAGCGATATCACAAGGAAACCATCTCTTGTCGTGGCACCAAC
AGTGGCGTTAATGCAGTGGAAAAATGAAATCGAACAACACACAAACAAGAAATTATCCGT
ATACATGTACCATGGAGCTAATAGAACGAACAATCTAGGTGATTTCAAAGACGTTGACGT
TATCTTGACCACTTACGCTGTTTTGGAATCCGTCTATAGAAAACAAGTTTATGGTTTTAA
AAGAAAGGCTGGAACAGTAAAAGAAAAGAGTTTATTACATTCTATCAACTTTTACCGAGT
AATTTTAGATGAAGCTCATAATATCAAGGATAGAACAAGTAACACTGCCAAAGCTGTTAA
CTCCCTCCAGACGAAAAAAAGATGGTGTTTGTCTGGTACACCTTTGCAGAATAGAATCGG
TGAAATGTACTCTTTGATTAGATTCTTAAACATTGAACCATTCACGAGGTACTATTGCAA
GCAATGTTCTTGTTCATCTGAAAATTGGCGTTTCTCAGATTATTTACATTGTGATGACTG
TGGTCATGTTGGTATGCAGCACACAAATTTCTTCAATCATTTCATGTTGAAAAACGTTCA
AAAACATGGCATTGAAGGACCGGGTCTACAATCTTTCCAAAATATTCAGACCTTATTGGC
TAGGATCATGTTGAGGAGAACCAAGGTGGAAAGAGCGGACGACCTTGGATTGCCACCAAG
AATCGTTACTGTTAGAAAGGATTACTTCAACGAAGAGGAGAAGGATCTCTATCAAAGTTT
ATACTCGGACATCAAAAGGAAGTATAACTCTTATGTTGAGGAAGGTGTGGTTTTGAATAA
TTATGCTAATATCTTTACCTTAATCACTAGAATGAGACAGATGGCGGACCATCCTGATCT
AGTATTGAAAAGGCTCAAGGGAAATAATGATAATAACCCCGGTGTTATTATCTGTCAGTT
ATGTGATGATGAAGCTGAAGAACCAATTGAATCCAAATGCCATCATAGGTTTTGTCGCCT
CTGCATCAACGAATATATTGATTCTTTCATGGCAGATGAAAAAAAACTAACATGTCCGGT
ATGTCACATTGGACTCAGTATCGATTTACAACAACAAGCTCTTGAAGTTGATGAAGAACT
ATTCAAAAAGCAAAGTATTGTCAGTCGGTTAAAAATGGGAGGTAAATGGAGGTCCTCCAC
TAAGATTGAGGCTTTGGTTGAGGAGTTATACAACTTGAGAAGTGACAAGCGCACGATCAA
GTCGATTGTCTTTTCCCAATTCACATCAATGTTAGATCTTGTTGAATGGAGATTAAAACG
TGCAGGTTTCCAAACAGTTAAATTGCAAGGCAGTATGACTCCCACTCAAAGAGATCAAAC
AATTAAATATTTTATGGAGAATATCCATTGTGAGGTTTTCTTAGTTAGTTTGAAAGCTGG
TGGTGTGGCTCTTAACTTATGTGAAGCTTCGCAGGTGTTCATCTTAGACCCATGGTGGAA
CCCCAGTGTTGAATGGCAGAGTGGTGATAGAGTCCATAGAATTGGTCAATTCCGGCCAGT
GAAAATTACAAGATTCTGTATTGAAGATAGCATAGAGTCCAGAATTATCGAACTTCAAGA
AAAGAAGGCTAGCATGATTCATGCAACAATCAATCAGGACGAGGCGGCAATTAATAGATT
GACTCCGGCAGATTTGCAGTTTTTATTCAACAATTGATTTTATATCAGGATAAAATACAT
AAAGATGCATACTTCTTTTTAGTTACGGATGTTTATATACATCCATATTTATATTAAAAA
GTATACTGTCCCTTAAATGTTTTCAAGCAGCAGCGGAACTACTACGAGCACCAGCTCCTG
AAGAAACTAGCTTGATTTGCTCTTCAGACAATGATATTTGAGGTAAATTCAATTCACCAG
TCGTTGGTGGAGGAGGCAAAAAGCCTACCTTATTCAAAAAGGCAATATAAATACCGATTT
GTTCTGGGGTAGCTCCTTTCCCTGAAGAAACGTCAAC

>KLLA0B09240g.cds
ATGGAGGAAGGTGGGTTCATCAGAAGGACAAGGCAGAGCGGGAACCGGACTCGAACTGCC
AAGAAGAATGTCGTATACATTGAATCAAGTTCAGGTGAGTCCGAGGATGAGCCATTAGTA
AAGAAAGAAATTAAGAGCAATAAGGGTAACGCAAAAGCCAATGACAAGGGCAAGTGCAAA
ACCAAGGGCACAACTAAGGCAAACCGAAATTTGGATTCGGATTTAGAGTATGATGATTCT
TTGGTTCTCTTATCGGATCAGACGGACAGATCTGGTGATGAATCAAGTGATGAGCTCAAA
CGTGAACAGGTAGTCGAACTGATATCCTCTTCTGATGATGATGAACCTCTGCAAAATGGA
CCGCAAAAGAAGAAGAGAAAGGCTAATGGTAGGGCTGGTGGTGCCACTGCTACTAAGAAG
AAGCCGACAAAACCCAAGATCTCTCCTTTCGAAAGAAACACAGCAAAGTTGTATGCTCAT
CATTCAGAACTTATCGATGTGTTCAAAAAATTACAGGAATCGCCGATACGGCAGGTGGAA
AGAGCTCCTCAGCCTGATGGTATGGCCATTAGATTATTACCTTTTCAGTTGGAAGGTTTG
CACTGGTTGCAACAACAAGAAGAATCGGATTATAATGGTGGTGTGCTTGCTGATGAGATG
GGTATGGGTAAAACCATACAAACGATAGCTTTGCTGATGAGCGATATCACAAGGAAACCA
TCTCTTGTCGTGGCACCAACAGTGGCGTTAATGCAGTGGAAAAATGAAATCGAACAACAC
ACAAACAAGAAATTATCCGTATACATGTACCATGGAGCTAATAGAACGAACAATCTAGGT
GATTTCAAAGACGTTGACGTTATCTTGACCACTTACGCTGTTTTGGAATCCGTCTATAGA
AAACAAGTTTATGGTTTTAAAAGAAAGGCTGGAACAGTAAAAGAAAAGAGTTTATTACAT
TCTATCAACTTTTACCGAGTAATTTTAGATGAAGCTCATAATATCAAGGATAGAACAAGT
AACACTGCCAAAGCTGTTAACTCCCTCCAGACGAAAAAAAGATGGTGTTTGTCTGGTACA
CCTTTGCAGAATAGAATCGGTGAAATGTACTCTTTGATTAGATTCTTAAACATTGAACCA
TTCACGAGGTACTATTGCAAGCAATGTTCTTGTTCATCTGAAAATTGGCGTTTCTCAGAT
TATTTACATTGTGATGACTGTGGTCATGTTGGTATGCAGCACACAAATTTCTTCAATCAT
TTCATGTTGAAAAACGTTCAAAAACATGGCATTGAAGGACCGGGTCTACAATCTTTCCAA
AATATTCAGACCTTATTGGCTAGGATCATGTTGAGGAGAACCAAGGTGGAAAGAGCGGAC
GACCTTGGATTGCCACCAAGAATCGTTACTGTTAGAAAGGATTACTTCAACGAAGAGGAG
AAGGATCTCTATCAAAGTTTATACTCGGACATCAAAAGGAAGTATAACTCTTATGTTGAG
GAAGGTGTGGTTTTGAATAATTATGCTAATATCTTTACCTTAATCACTAGAATGAGACAG
ATGGCGGACCATCCTGATCTAGTATTGAAAAGGCTCAAGGGAAATAATGATAATAACCCC
GGTGTTATTATCTGTCAGTTATGTGATGATGAAGCTGAAGAACCAATTGAATCCAAATGC
CATCATAGGTTTTGTCGCCTCTGCATCAACGAATATATTGATTCTTTCATGGCAGATGAA
AAAAAACTAACATGTCCGGTATGTCACATTGGACTCAGTATCGATTTACAACAACAAGCT
CTTGAAGTTGATGAAGAACTATTCAAAAAGCAAAGTATTGTCAGTCGGTTAAAAATGGGA
GGTAAATGGAGGTCCTCCACTAAGATTGAGGCTTTGGTTGAGGAGTTATACAACTTGAGA
AGTGACAAGCGCACGATCAAGTCGATTGTCTTTTCCCAATTCACATCAATGTTAGATCTT
GTTGAATGGAGATTAAAACGTGCAGGTTTCCAAACAGTTAAATTGCAAGGCAGTATGACT
CCCACTCAAAGAGATCAAACAATTAAATATTTTATGGAGAATATCCATTGTGAGGTTTTC
TTAGTTAGTTTGAAAGCTGGTGGTGTGGCTCTTAACTTATGTGAAGCTTCGCAGGTGTTC
ATCTTAGACCCATGGTGGAACCCCAGTGTTGAATGGCAGAGTGGTGATAGAGTCCATAGA
ATTGGTCAATTCCGGCCAGTGAAAATTACAAGATTCTGTATTGAAGATAGCATAGAGTCC
AGAATTATCGAACTTCAAGAAAAGAAGGCTAGCATGATTCATGCAACAATCAATCAGGAC
GAGGCGGCAATTAATAGATTGACTCCGGCAGATTTGCAGTTTTTATTCAACAATTGA

>KLLA0B09240g.aa
MEEGGFIRRTRQSGNRTRTAKKNVVYIESSSGESEDEPLVKKEIKSNKGNAKANDKGKCK
TKGTTKANRNLDSDLEYDDSLVLLSDQTDRSGDESSDELKREQVVELISSSDDDEPLQNG
PQKKKRKANGRAGGATATKKKPTKPKISPFERNTAKLYAHHSELIDVFKKLQESPIRQVE
RAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRKP
SLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYR
KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGT
PLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNH
FMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEE
KDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNP
GVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQA
LEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDL
VEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVF
ILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQD
EAAINRLTPADLQFLFNN*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

KLLA0B09240g

KLLA0B09240g

Genomic environment map

Computed results

Homologs and Orthologs

Protein KLLA0B09240p

Protein domain map

Computed results for KLLA0B09240p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes