ERGO0G00880g

AGOS_AGL335W, Syntenic homolog of Saccharomyces cerevisiae YMR301C (ATM1)

Genomic environment map

Element type: CDS
Element length: 2076 nucleotides,
on sense strand of
Ergo0G: 82640..84715.
Other names:
AGL335W
AGOS_AGL335W
Coding sequence: 692 codons.

Database cross references:
EMBL: AE016820
GeneID: 4622625
GenomeReviews: AE016820_GR
HOGENOM: HBG758042
NMPDR: fig|33169.1.peg.3977

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0060
Consensus family of 46 members, sczltkgdpy (4 4 4 4 4 4 4 4 8 6)
46-member family, phyletic pattern sczltkgd-py, profile (4 4 4 4 4 4 4 4 0 8 6)
Proteins: SACE0K00440p SACE0L11945p SACE0M10274p SACE0P00352p CAGL0A01133p CAGL0E00385p CAGL0K00363p CAGL0M13739p ZYRO0D07106p ZYRO0F00396p ZYRO0F17050p ZYRO0G02244p SAKL0A10208p SAKL0C02244p SAKL0E00748p SAKL0H00968p KLTH0B01100p KLTH0B09482p KLTH0C11616p KLTH0F02024p KLLA0A10131p KLLA0B14256p KLLA0C01991p KLLA0D00748p ERGO0C05280p ERGO0F15840p ERGO0F21802p ERGO0G00880p DEHA2B03894p DEHA2B07172p DEHA2E23760p DEHA2F17226p PISO0A08030p PISO0B08097p PISO0I06388p PISO0J08193p PISO0M08064p PISO0M12134p PISO0N08219p PISO0N12443p YALI0A11473p YALI0B12188p YALI0E00880p YALI0E05973p YALI0E08030p YALI0F20174p
Search in: Génolevures Google

Homologs in protein family: GL3C0060
Orthologs: strict determination not possible; homologs must be refined manually

Protein ERGO0G00880p

Protein domain map

Protein length: 691 amino acids
Protein family: GL3C0060

Database cross references:
AGD: AGL335W
HSSP: Q7RBT4
InterPro: IPR001140
InterPro: IPR003439
InterPro: IPR003593
InterPro: IPR011527
InterPro: IPR017871
InterPro: IPR017940
KEGG: ago:AGOS_AGL335W
PROSITE: PS00211
PROSITE: PS50893
PROSITE: PS50929
Pfam: PF00005
Pfam: PF00664
RefSeq: NP_986332.1
SMART: SM00382
UniProtKB/Swiss-Prot: Q751N2
UniProtKB: ATM1_ASHGO

Phylogeny

PhylomeDB:Q751N2

Computed results for ERGO0G00880p

None available yet

Gene Ontology terms

Sequence data

>ERGO0G00880g.nt
ATGTTCAGGCTGCTTCGATTTTCGCCCTCGCGGTACTACCCGCGCAGCATGGCGCCAGTG
AGGTGGAGCACACACCCCTACCATGTGACAGCGCCCAGGATGTGGGGTACGCGGATGCCG
CTGCAATTACAGGCCTCCTTGCGACCTAATAATGCTGTCGAGAAGGGGATTAGCGGCGAT
GTCAAAGTGGCAGGCGCCATGGTGAAGCCTGCTGCGAGCGGTGGCGAAAGTGCGAAGTCT
AAGACTCCTACCGTGTCGGAACTGAAAATCTTGAAGGATTTGTTCAGGTACATATGGCCG
CGGGGTGACCGCAAAGTCAAGACAAGGGTCCTAATTGCCCTTGGGCTGCTCCTAGGGTCG
AAGCTGTTGAATGTGCAGGTTCCTTTTTTCTTCAAAAGCACGGTGGACTCTATGAACATC
GAGTGGGGTGATGTAGGAACAGCGTTGCCTATCGCAGTAACGTTGACTGTTTTATCCTAT
GGTGCGGCGAGATTCGGTGCAGTGTTGTTTGTGGAGCTACGAAATGCCGTTTTCTCGAAT
GTGGCTCAAAGTGCTATTACGAAGGTTTCTCTACAGACATTTCAGCACCTAATGAAGCTT
GACCTTGGCTGGCACTTGAGTCGGCAGACAGGTGGACTAACCCGAGCAATGGATCGTGGT
TGTAAAGGTATCTCTTATGTGCTCAGTGCAATGGTTTTTCACATAATACCGATTACATTT
GAAATATCGATGGTATGTGGCATATTGACATACCAGTTTGGTGCTTCCTTCGCTGCTATA
ACATTCTCGACTATGCTTCTTTACTCCATCTTTACTTTCAGAACGACGGCGTGGCGCACA
CGGTTTAGGCGTGATGCGAACAAGGCTGACAATAAGGCCGCTAGTGTGGCATTGGATTCC
CTAATAAATTTTGAAGCTGTAAAGTATTTCAATAACGAGAAGTACCTTGCGGACAAGTAT
CACACATCCTTGATGAAGTACCGGGATTCCCAGATAAAGGTCTCGCAATCGCTGGCGTTT
TTGAACACCGGCCAGAACCTAATTTTTACCACTGCACTGACTGCAATGATGTATATGGCC
TGTAATGGTGTTATGCAGGGCTCTCTTACAGTGGGGGATCTTGTGTTAATTAATCAACTG
GTATTCCAGCTCTCCGTGCCACTAAACTTCCTTGGTAGCGTCTACCGTGATCTCAAGCAG
TCTCTGATAGATATGGAATCTTTATTTAAACTGCAAAAAAATCAGGTCACAATTAAGAAC
TCCCCAAATGCCCAGAACCTACCAATACACAAACCGTTGGATATTCGCTTTGAAAATGTT
ACGTTTGGCTATGACCCGGAGCGGCGTATATTGAACAATGTTTCGTTTACCATCCCAGCT
GGAATGAAGACTGCCATAGTAGGCCCATCGGGCTCGGGGAAGTCCACCATTTTGAAGCTC
GTATTTAGATTCTATGAGCCCGAGCAAGGTCGTATCCTAGTTGGCGGCACAGATATCCGC
GATTTAGACTTGCTTTCTTTACGGAAGGCTATCGGTGTCGTGCCCCAAGATACTCCTCTC
TTCAATGACACAATCTGGGAGAATGTTAAATTCGGCAATATCAGTTCCTCTGACGATGAG
ATTCTCAGGGCCATAGAAAAAGCTCAACTCACGAAGCTACTCCAGAACCTACCAAAGGGC
GCTTCCACCGTTGTAGGGGAGCGCGGTTTGATGATCAGCGGAGGTGAGAAACAAAGGCTT
GCTATTGCTCGTGTGCTTTTGAAGGACGCTCCGCTGATGTTTTTCGACGAGGCTACAAGT
GCTCTGGATACACACACAGAGCAGGCACTCTTGCACACCATTCAGCAGAACTTTTCTTCC
AATTCAAAGACGAGCGTTTACGTTGCCCATAGACTGCGCACAATCGCTGATGCAGATAAG
ATCATTGTTCTTGAACAAGGTTCTGTCCGCGAAGAGGGCACACACAGCTCGCTGTTAGCG
TCACAAGGATCCCTATACCGGGGTCTGTGGGATATTCAGGAAAACCTAACGCTTCCGGAA
CGGCCTGAGCAGTCAACCGGATCTCAGCATGCATAG

>ERGO0G00880g.cds
ATGTTCAGGCTGCTTCGATTTTCGCCCTCGCGGTACTACCCGCGCAGCATGGCGCCAGTG
AGGTGGAGCACACACCCCTACCATGTGACAGCGCCCAGGATGTGGGGTACGCGGATGCCG
CTGCAATTACAGGCCTCCTTGCGACCTAATAATGCTGTCGAGAAGGGGATTAGCGGCGAT
GTCAAAGTGGCAGGCGCCATGGTGAAGCCTGCTGCGAGCGGTGGCGAAAGTGCGAAGTCT
AAGACTCCTACCGTGTCGGAACTGAAAATCTTGAAGGATTTGTTCAGGTACATATGGCCG
CGGGGTGACCGCAAAGTCAAGACAAGGGTCCTAATTGCCCTTGGGCTGCTCCTAGGGTCG
AAGCTGTTGAATGTGCAGGTTCCTTTTTTCTTCAAAAGCACGGTGGACTCTATGAACATC
GAGTGGGGTGATGTAGGAACAGCGTTGCCTATCGCAGTAACGTTGACTGTTTTATCCTAT
GGTGCGGCGAGATTCGGTGCAGTGTTGTTTGTGGAGCTACGAAATGCCGTTTTCTCGAAT
GTGGCTCAAAGTGCTATTACGAAGGTTTCTCTACAGACATTTCAGCACCTAATGAAGCTT
GACCTTGGCTGGCACTTGAGTCGGCAGACAGGTGGACTAACCCGAGCAATGGATCGTGGT
TGTAAAGGTATCTCTTATGTGCTCAGTGCAATGGTTTTTCACATAATACCGATTACATTT
GAAATATCGATGGTATGTGGCATATTGACATACCAGTTTGGTGCTTCCTTCGCTGCTATA
ACATTCTCGACTATGCTTCTTTACTCCATCTTTACTTTCAGAACGACGGCGTGGCGCACA
CGGTTTAGGCGTGATGCGAACAAGGCTGACAATAAGGCCGCTAGTGTGGCATTGGATTCC
CTAATAAATTTTGAAGCTGTAAAGTATTTCAATAACGAGAAGTACCTTGCGGACAAGTAT
CACACATCCTTGATGAAGTACCGGGATTCCCAGATAAAGGTCTCGCAATCGCTGGCGTTT
TTGAACACCGGCCAGAACCTAATTTTTACCACTGCACTGACTGCAATGATGTATATGGCC
TGTAATGGTGTTATGCAGGGCTCTCTTACAGTGGGGGATCTTGTGTTAATTAATCAACTG
GTATTCCAGCTCTCCGTGCCACTAAACTTCCTTGGTAGCGTCTACCGTGATCTCAAGCAG
TCTCTGATAGATATGGAATCTTTATTTAAACTGCAAAAAAATCAGGTCACAATTAAGAAC
TCCCCAAATGCCCAGAACCTACCAATACACAAACCGTTGGATATTCGCTTTGAAAATGTT
ACGTTTGGCTATGACCCGGAGCGGCGTATATTGAACAATGTTTCGTTTACCATCCCAGCT
GGAATGAAGACTGCCATAGTAGGCCCATCGGGCTCGGGGAAGTCCACCATTTTGAAGCTC
GTATTTAGATTCTATGAGCCCGAGCAAGGTCGTATCCTAGTTGGCGGCACAGATATCCGC
GATTTAGACTTGCTTTCTTTACGGAAGGCTATCGGTGTCGTGCCCCAAGATACTCCTCTC
TTCAATGACACAATCTGGGAGAATGTTAAATTCGGCAATATCAGTTCCTCTGACGATGAG
ATTCTCAGGGCCATAGAAAAAGCTCAACTCACGAAGCTACTCCAGAACCTACCAAAGGGC
GCTTCCACCGTTGTAGGGGAGCGCGGTTTGATGATCAGCGGAGGTGAGAAACAAAGGCTT
GCTATTGCTCGTGTGCTTTTGAAGGACGCTCCGCTGATGTTTTTCGACGAGGCTACAAGT
GCTCTGGATACACACACAGAGCAGGCACTCTTGCACACCATTCAGCAGAACTTTTCTTCC
AATTCAAAGACGAGCGTTTACGTTGCCCATAGACTGCGCACAATCGCTGATGCAGATAAG
ATCATTGTTCTTGAACAAGGTTCTGTCCGCGAAGAGGGCACACACAGCTCGCTGTTAGCG
TCACAAGGATCCCTATACCGGGGTCTGTGGGATATTCAGGAAAACCTAACGCTTCCGGAA
CGGCCTGAGCAGTCAACCGGATCTCAGCATGCATAG

>ERGO0G00880g.aa
MFRLLRFSPSRYYPRSMAPVRWSTHPYHVTAPRMWGTRMPLQLQASLRPNNAVEKGISGD
VKVAGAMVKPAASGGESAKSKTPTVSELKILKDLFRYIWPRGDRKVKTRVLIALGLLLGS
KLLNVQVPFFFKSTVDSMNIEWGDVGTALPIAVTLTVLSYGAARFGAVLFVELRNAVFSN
VAQSAITKVSLQTFQHLMKLDLGWHLSRQTGGLTRAMDRGCKGISYVLSAMVFHIIPITF
EISMVCGILTYQFGASFAAITFSTMLLYSIFTFRTTAWRTRFRRDANKADNKAASVALDS
LINFEAVKYFNNEKYLADKYHTSLMKYRDSQIKVSQSLAFLNTGQNLIFTTALTAMMYMA
CNGVMQGSLTVGDLVLINQLVFQLSVPLNFLGSVYRDLKQSLIDMESLFKLQKNQVTIKN
SPNAQNLPIHKPLDIRFENVTFGYDPERRILNNVSFTIPAGMKTAIVGPSGSGKSTILKL
VFRFYEPEQGRILVGGTDIRDLDLLSLRKAIGVVPQDTPLFNDTIWENVKFGNISSSDDE
ILRAIEKAQLTKLLQNLPKGASTVVGERGLMISGGEKQRLAIARVLLKDAPLMFFDEATS
ALDTHTEQALLHTIQQNFSSNSKTSVYVAHRLRTIADADKIIVLEQGSVREEGTHSSLLA
SQGSLYRGLWDIQENLTLPERPEQSTGSQHA*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

ERGO0G00880g

ERGO0G00880g

Genomic environment map

Computed results

Homologs and Orthologs

Protein ERGO0G00880p

Protein domain map

Phylogeny

Computed results for ERGO0G00880p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes