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Element type: CDS
Element length: 1599 nucleotides,
on anti-sense strand of
Ergo0F: complement(1229967..1231565).
Other names:
AFR440C
AGOS_AFR440C
Coding sequence: 533 codons.
Element length: 1599 nucleotides,
on anti-sense strand of
Ergo0F: complement(1229967..1231565).
Other names:
AFR440C
AGOS_AFR440C
Coding sequence: 533 codons.
Homologs and Orthologs
Homologs in protein families: GL3R1598 GL3R1598.F1 GL3R1598.N1Orthologs by synteny: ZYRO0A00836g SAKL0D00748g KLTH0F06820g KLLA0C16896g
Protein ERGO0F16060p 
Protein domain map
Database cross references:
InterPro: IPR006093
InterPro: IPR006094
InterPro: IPR007173
InterPro: IPR010031
UniProtKB/Swiss-Prot: Q752Y3
InterPro: IPR006093
InterPro: IPR006094
InterPro: IPR007173
InterPro: IPR010031
UniProtKB/Swiss-Prot: Q752Y3
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>ERGO0F16060g.nt ATGTCTGTGTTAGCAGGTGTGGAGGCCAGCGGGATAGCTAGGAATTATGTGTTCAAGAAT TGGGCAGGGATTTATTCGGCGCGGCCGCGGCTGTACTTCCAACCCAGGTCGGAGGATGAG GTGGTGGCGATAGTGCGGGCGGCGCGTGAGCAGGGGCGGACGATTGTGACGGTGGGGTCG GGGCACTCTCCGAGCGACATGTGCGCAACGGACGACTGGATGGTGAATCTAGACCGGCTG AATGGGGTGCTGGAGCTGCAGGAGGACGAGCAGGGGCGGTACGCGGACGTGACGGTTGCA GCTGGGATCCGGGTGTACGAGCTGCACCGGTACCTGAGCGCACGGGGGTATGCGCTGCAG AACCTGGGGTCAATTTCGGAGCAGAGTGTGGGGGGGATCATCTCGACGGGCACGCACGGG TCATCGCCGTACCACGGCCTGGTGTCCTCGCAGTATGTCAATCTGACGCTGGTGAACGGG CGCGGCGAGCTTGTGTTTCTGGACTCGGAGCACGAGCCGGAGGTGTTCCGCGCGGCGATG TTGTCGCTGGGCAAGCTGGGTATCATTGTCCGTGCGACGATCCGCGTTGTACCTGCGTTC AACATCCATTCCACGCAGGAGGTGATCAACTTCGAGACGCTCCTTGACAATTGGGAGACG ATCTGGACGTCCAGCGAATTCATCCGCTGCTGGTGGTACCCTTATGTGCGCAAGTGCGTT CTGTGGCGCGGCGTGAAAACATCTGAGCCGGCGGAGAAGAGCCGCAGTTCATGGTGGGGC ACGACCTTGGGTCGCCTGGTGTACGAATCTCTCCTGTGGCTCACCGTGAACGTCTATCCT TCCCTGACGCCGTTTGTTGAGCGGTTTATTTTCCGTCAGCAGTACGGCAAAGTTGAGACG TTTGGTAATGGTGACGAGGCTGTCCAGACTTCAATCGATGGGCTGAATATGGACTGTCTG TTCTCGCAGTTTGTTGACGAATGGGCCTGTCCGCTGAATAATGGGCCCGAGGTGTTGCGC TCTCTGGACCATTCCATCGCACAGGCCGCCCAGAACAAGGAATTTTTTGTTCACGTACCA ATCGAAGTCCGCTGCTCCAACACGACTCTTCCACACGAATATAAATGCCCGGAAGACCGG ACGGTGACGGCCCCTGGTCCAGTCTACGGTAACTTGCTCCGTCCGTATCTGGACAACACG CCCTCTCACTTGCGCTATGCTCCCCTCTCGGACGTTACCAACTCCCAGTTGACCCTCTAT ATTAACGCTACGATATACAGGCCTTTTGGAACGAATACCCCAATTCACAAGTGGTTCACT CTCTTTGAAGACACCTTGGGGGCAGCCGGCGGTAAGCCACACTGGGCTAAGAATTTCTTG GGCTCTACCGCAACCGCTGCGGGCCCCGTCAAGAGTTCTGACGAATATCAAGATTACGAA ATGAGAGGAATGGCCACAAAAATAAAAGAATGGTATGGCGACAATCTGAAGCAATTCCAA AAGGTTAGAAGAGAACAAGACCCACATAATGTCTTCATAGCTAACAAGGATTGGGCCGTT AAGAACGGCATTATCGACATCGATGAACTGGATTCTTAA
Coding sequence
>ERGO0F16060g.cds ATGTCTGTGTTAGCAGGTGTGGAGGCCAGCGGGATAGCTAGGAATTATGTGTTCAAGAAT TGGGCAGGGATTTATTCGGCGCGGCCGCGGCTGTACTTCCAACCCAGGTCGGAGGATGAG GTGGTGGCGATAGTGCGGGCGGCGCGTGAGCAGGGGCGGACGATTGTGACGGTGGGGTCG GGGCACTCTCCGAGCGACATGTGCGCAACGGACGACTGGATGGTGAATCTAGACCGGCTG AATGGGGTGCTGGAGCTGCAGGAGGACGAGCAGGGGCGGTACGCGGACGTGACGGTTGCA GCTGGGATCCGGGTGTACGAGCTGCACCGGTACCTGAGCGCACGGGGGTATGCGCTGCAG AACCTGGGGTCAATTTCGGAGCAGAGTGTGGGGGGGATCATCTCGACGGGCACGCACGGG TCATCGCCGTACCACGGCCTGGTGTCCTCGCAGTATGTCAATCTGACGCTGGTGAACGGG CGCGGCGAGCTTGTGTTTCTGGACTCGGAGCACGAGCCGGAGGTGTTCCGCGCGGCGATG TTGTCGCTGGGCAAGCTGGGTATCATTGTCCGTGCGACGATCCGCGTTGTACCTGCGTTC AACATCCATTCCACGCAGGAGGTGATCAACTTCGAGACGCTCCTTGACAATTGGGAGACG ATCTGGACGTCCAGCGAATTCATCCGCTGCTGGTGGTACCCTTATGTGCGCAAGTGCGTT CTGTGGCGCGGCGTGAAAACATCTGAGCCGGCGGAGAAGAGCCGCAGTTCATGGTGGGGC ACGACCTTGGGTCGCCTGGTGTACGAATCTCTCCTGTGGCTCACCGTGAACGTCTATCCT TCCCTGACGCCGTTTGTTGAGCGGTTTATTTTCCGTCAGCAGTACGGCAAAGTTGAGACG TTTGGTAATGGTGACGAGGCTGTCCAGACTTCAATCGATGGGCTGAATATGGACTGTCTG TTCTCGCAGTTTGTTGACGAATGGGCCTGTCCGCTGAATAATGGGCCCGAGGTGTTGCGC TCTCTGGACCATTCCATCGCACAGGCCGCCCAGAACAAGGAATTTTTTGTTCACGTACCA ATCGAAGTCCGCTGCTCCAACACGACTCTTCCACACGAATATAAATGCCCGGAAGACCGG ACGGTGACGGCCCCTGGTCCAGTCTACGGTAACTTGCTCCGTCCGTATCTGGACAACACG CCCTCTCACTTGCGCTATGCTCCCCTCTCGGACGTTACCAACTCCCAGTTGACCCTCTAT ATTAACGCTACGATATACAGGCCTTTTGGAACGAATACCCCAATTCACAAGTGGTTCACT CTCTTTGAAGACACCTTGGGGGCAGCCGGCGGTAAGCCACACTGGGCTAAGAATTTCTTG GGCTCTACCGCAACCGCTGCGGGCCCCGTCAAGAGTTCTGACGAATATCAAGATTACGAA ATGAGAGGAATGGCCACAAAAATAAAAGAATGGTATGGCGACAATCTGAAGCAATTCCAA AAGGTTAGAAGAGAACAAGACCCACATAATGTCTTCATAGCTAACAAGGATTGGGCCGTT AAGAACGGCATTATCGACATCGATGAACTGGATTCTTAA
Predicted translation product
>ERGO0F16060g.aa MSVLAGVEASGIARNYVFKNWAGIYSARPRLYFQPRSEDEVVAIVRAAREQGRTIVTVGS GHSPSDMCATDDWMVNLDRLNGVLELQEDEQGRYADVTVAAGIRVYELHRYLSARGYALQ NLGSISEQSVGGIISTGTHGSSPYHGLVSSQYVNLTLVNGRGELVFLDSEHEPEVFRAAM LSLGKLGIIVRATIRVVPAFNIHSTQEVINFETLLDNWETIWTSSEFIRCWWYPYVRKCV LWRGVKTSEPAEKSRSSWWGTTLGRLVYESLLWLTVNVYPSLTPFVERFIFRQQYGKVET FGNGDEAVQTSIDGLNMDCLFSQFVDEWACPLNNGPEVLRSLDHSIAQAAQNKEFFVHVP IEVRCSNTTLPHEYKCPEDRTVTAPGPVYGNLLRPYLDNTPSHLRYAPLSDVTNSQLTLY INATIYRPFGTNTPIHKWFTLFEDTLGAAGGKPHWAKNFLGSTATAAGPVKSSDEYQDYE MRGMATKIKEWYGDNLKQFQKVRREQDPHNVFIANKDWAVKNGIIDIDELDS*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/ERGO/ERGO0F16060p