ERGO0E06578g


AGOS_AEL074W, Syntenic homolog of Saccharomyces cerevisiae YEL027W (CUP5)

Genomic environment map

Element type: CDS
Element length: 483 nucleotides,
on sense strand of
Ergo0E: 488369..488851.
Other names:
AEL074W
AGOS_AEL074W
Coding sequence: 161 codons.
Database cross references:
EMBL: AE016818
GeneID: 4620979
GenomeReviews: AE016818_GR
HOGENOM: HBG325773
NMPDR: fig|33169.1.peg.2432

Computed results  

None available yet


Homologs and Orthologs

Homologs in protein family: GL3C0121
Orthologs: strict determination not possible; homologs must be refined manually

Protein ERGO0E06578p  


Protein domain map

Protein length: 160 amino acids
Protein family: GL3C0121
Database cross references:
AGD: AEL074W
Gene3D: G3DSA:1.20.20.10
InterPro: IPR000245
InterPro: IPR002379
InterPro: IPR011555
KEGG: ago:AGOS_AEL074W
PRINTS: PR00122
Pfam: PF00137
RefSeq: NP_984787.1
TIGRFAMs: TIGR01100
UniProtKB/TrEMBL: Q757T6
UniProtKB: Q757T6_ASHGO

Phylogeny  

PhylomeDB:Q757T6

Computed results for ERGO0E06578p  

None available yet

Gene Ontology terms  


Sequence data  


Nucleotide sequence    

>ERGO0E06578g.nt
ATGAGTGAGTTGTGTCCGGTCTATGCTCCATTTTTTGGCGCTATTGGTTGTGCTGCGGCG
ATAGTGTTCACGTCTTTCGGTGCTGCGTATGGTACTGCTAAATCCGGTGTGAGCATTTGC
GCGACATGTGTTCTAAGGCCAGATTTGCTATTCAAAAACATCGTGCCAGTGATTATGGCG
GGTATCATTGCAATCTACGGGTTGGTGGTGTCTGTTTTGGTGTGTTACTCTTTGGGTCAG
AAACAAGCATTGTACACTGGTTTCATACAGCTTGGTGCCGGGTTGTCCGTCGGGCTCAGT
GGGCTTGCTGCGGGGTTTGCTATCGGAATTGTGGGTGATGCGGGTGTGCGTGGAAATGCG
CAGCAGCCTCGTCTATTTGTGGGTATGATTTTGATTTTGATTTTTGCTGAAGTCTTGGGT
TTGTACGGCTTGATCGTGGCTTTGTTGTTGAACTCCAGAGCGACTCAAGATGTCACCTGT
TAG

Coding sequence    

>ERGO0E06578g.cds
ATGAGTGAGTTGTGTCCGGTCTATGCTCCATTTTTTGGCGCTATTGGTTGTGCTGCGGCG
ATAGTGTTCACGTCTTTCGGTGCTGCGTATGGTACTGCTAAATCCGGTGTGAGCATTTGC
GCGACATGTGTTCTAAGGCCAGATTTGCTATTCAAAAACATCGTGCCAGTGATTATGGCG
GGTATCATTGCAATCTACGGGTTGGTGGTGTCTGTTTTGGTGTGTTACTCTTTGGGTCAG
AAACAAGCATTGTACACTGGTTTCATACAGCTTGGTGCCGGGTTGTCCGTCGGGCTCAGT
GGGCTTGCTGCGGGGTTTGCTATCGGAATTGTGGGTGATGCGGGTGTGCGTGGAAATGCG
CAGCAGCCTCGTCTATTTGTGGGTATGATTTTGATTTTGATTTTTGCTGAAGTCTTGGGT
TTGTACGGCTTGATCGTGGCTTTGTTGTTGAACTCCAGAGCGACTCAAGATGTCACCTGT
TAG

Predicted translation product    

>ERGO0E06578g.aa
MSELCPVYAPFFGAIGCAAAIVFTSFGAAYGTAKSGVSICATCVLRPDLLFKNIVPVIMA
GIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGNA
QQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDVTC*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites