ERGO0E06380g


Syntenic homolog of Saccharomyces cerevisiae YBR026C (ETR1)

Genomic environment map

Element type: CDS
Element length: 1131 nucleotides,
on sense strand of
Ergo0E: 476365..477495.
Other names:
AEL081W
AGOS_AEL081W
Coding sequence: 377 codons.

Computed results  

None available yet

Homologs and Orthologs

Homologs in protein families: GL3C0928 GL3C0928.F1 GL3C0928.N3
Orthologs by synteny: ZYRO0A03916g SAKL0C08910g KLTH0C09020g KLLA0F24552g

Protein ERGO0E06380p  


Protein domain map

Protein length: 376 amino acids
Protein family: GL3C0928
Database cross references:
InterPro: IPR002085
InterPro: IPR013154
InterPro: IPR016040
UniProtKB/Swiss-Prot: Q757U3

Computed results for ERGO0E06380p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

None available yet

Sequence data  


Nucleotide sequence    

>ERGO0E06380g.nt
ATGCAAGCTCTAAACACTACGAAACGGCTAATGTCTACCAAACAATTTCCATTGTTCAAG
TCACTACTCTATTCGTCGCACGACCCTGCAGACTGCACGCAAGTGCTCAAAGTTCACAGC
TACACCCCGAAGGTGGGAGCCGATGAGTCGATTCTTCTCCGCACGTTGGCGTTCCCAATT
AACCCTTCGGACATCAACCAATTGCAGGGGGTGTATCCCTCGGTGCCCGAGAAAACGTTA
GACTACTCGACCGAAAAGCCGGCCGCAATTGCGGGCAACGAGGGCGTGTTCGAGGTGATG
TCTGTCCCGCAAGGGGAACGCCGGCTGGCTGTTGGCGACTGGGTAATTCCGCTGTACAGC
AACACCGGGACGTGGACAAACTACCAGACATGCCGCGATGCTGGCACGCTGGTTAAGGTT
AACGGGCTGGACCTGTACACGGCGGCAACAATCGCAGTGAATGGCTGCACTGCGTACCAA
CTGGTCAACGACTACGTGCAATGGGATCCATCGGGCAACGAGTGGATCGTGCAGAACGCA
GGAACGTCAGCGGTGTCCAAGATCGTGACGCAGGTGGCCCAGGCGCGCGGCGTCAAAACC
CTCAGTGTGATCCGGGACCGTGAAAACTTTGCAGAAGTAGCCAAGGAGCTGGAAGAGCGC
TATGGGGCTACGAAGGTCATCAGCGAAACCCAAAACAACGACAAGGACTTTTCCAAGGAC
GAATTGCCGGTAATCCTTGGCCCAAACGCGCGCGTCCGCCTCGCGCTGAACTCTGTGGGT
GGAAAATCCAGTGGGGCTATCGCGAGAAAGCTAGAGCGGGATGGTACCATGTTGACCTAC
GGGGGGATGTCCAGGCAGCCTGTGACGGTTCCAACGACGCTCTTAATTTTCAATGGCCTG
AAGTCCTTGGGGTACTGGATCACCGAGAATACGAAGAGAAACCCTCAATCTAAGATCGAC
ACCATATCCGTGCTCATGCGCATGTACGGTGATGGACAGCTGCAGCCTCCAGAGGCCGAC
ATAAAGAAGATTGAGTGGGACGTTCAAAAAATGAATGATGAACAGCTGCTTGAGGCGGTT
AAAAATGGTATCCAAAGCAACGGTAAGAGTGTAGTAGTGCTCAAGTGGTAA

Coding sequence    

>ERGO0E06380g.cds
ATGCAAGCTCTAAACACTACGAAACGGCTAATGTCTACCAAACAATTTCCATTGTTCAAG
TCACTACTCTATTCGTCGCACGACCCTGCAGACTGCACGCAAGTGCTCAAAGTTCACAGC
TACACCCCGAAGGTGGGAGCCGATGAGTCGATTCTTCTCCGCACGTTGGCGTTCCCAATT
AACCCTTCGGACATCAACCAATTGCAGGGGGTGTATCCCTCGGTGCCCGAGAAAACGTTA
GACTACTCGACCGAAAAGCCGGCCGCAATTGCGGGCAACGAGGGCGTGTTCGAGGTGATG
TCTGTCCCGCAAGGGGAACGCCGGCTGGCTGTTGGCGACTGGGTAATTCCGCTGTACAGC
AACACCGGGACGTGGACAAACTACCAGACATGCCGCGATGCTGGCACGCTGGTTAAGGTT
AACGGGCTGGACCTGTACACGGCGGCAACAATCGCAGTGAATGGCTGCACTGCGTACCAA
CTGGTCAACGACTACGTGCAATGGGATCCATCGGGCAACGAGTGGATCGTGCAGAACGCA
GGAACGTCAGCGGTGTCCAAGATCGTGACGCAGGTGGCCCAGGCGCGCGGCGTCAAAACC
CTCAGTGTGATCCGGGACCGTGAAAACTTTGCAGAAGTAGCCAAGGAGCTGGAAGAGCGC
TATGGGGCTACGAAGGTCATCAGCGAAACCCAAAACAACGACAAGGACTTTTCCAAGGAC
GAATTGCCGGTAATCCTTGGCCCAAACGCGCGCGTCCGCCTCGCGCTGAACTCTGTGGGT
GGAAAATCCAGTGGGGCTATCGCGAGAAAGCTAGAGCGGGATGGTACCATGTTGACCTAC
GGGGGGATGTCCAGGCAGCCTGTGACGGTTCCAACGACGCTCTTAATTTTCAATGGCCTG
AAGTCCTTGGGGTACTGGATCACCGAGAATACGAAGAGAAACCCTCAATCTAAGATCGAC
ACCATATCCGTGCTCATGCGCATGTACGGTGATGGACAGCTGCAGCCTCCAGAGGCCGAC
ATAAAGAAGATTGAGTGGGACGTTCAAAAAATGAATGATGAACAGCTGCTTGAGGCGGTT
AAAAATGGTATCCAAAGCAACGGTAAGAGTGTAGTAGTGCTCAAGTGGTAA

Predicted translation product    

>ERGO0E06380g.aa
MQALNTTKRLMSTKQFPLFKSLLYSSHDPADCTQVLKVHSYTPKVGADESILLRTLAFPI
NPSDINQLQGVYPSVPEKTLDYSTEKPAAIAGNEGVFEVMSVPQGERRLAVGDWVIPLYS
NTGTWTNYQTCRDAGTLVKVNGLDLYTAATIAVNGCTAYQLVNDYVQWDPSGNEWIVQNA
GTSAVSKIVTQVAQARGVKTLSVIRDRENFAEVAKELEERYGATKVISETQNNDKDFSKD
ELPVILGPNARVRLALNSVGGKSSGAIARKLERDGTMLTYGGMSRQPVTVPTTLLIFNGL
KSLGYWITENTKRNPQSKIDTISVLMRMYGDGQLQPPEADIKKIEWDVQKMNDEQLLEAV
KNGIQSNGKSVVVLKW*




Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites