HomeDEHA2F27346g
similar to gnl|GLV|KLLA0B14839g Kluyveromyces lactis KLLA0B14839g and uniprot|Q759N7 Ashbya gossypii ADR238C ADR238Cp
Element type: CDS
Element length: 1272 nucleotides,
on anti-sense strand of
Deha2F: complement(2287177..2288448).
Other names:
DEHA-CDS2969.1
DEHA-IPF5848
DEHA0F29095g
Coding sequence: 424 codons.
Element length: 1272 nucleotides,
on anti-sense strand of
Deha2F: complement(2287177..2288448).
Other names:
DEHA-CDS2969.1
DEHA-IPF5848
DEHA0F29095g
Coding sequence: 424 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0576 GL3C0576.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein DEHA2F27346p 
Protein domain map
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>DEHA2F27346g.nt ATGGCATTTCTGGGGAGGATAAAATCCGTGATGTTGTCTTGGCTAAAAACGAAAATAATG AAAGTGGATGGAATGATCATGCAAATTCCAGTGACGAAATAGTCTTTGACGAACTGGTTT TAGAGTCTGATGACACCCCAGGGTCTACTAAGGTTGATTTCAATTCGAAATATGATGAAA CTTGATACAAATGACTTCGGAGCGGTTCAGGAGTAGTTTTTGAAGGATGTGTACATGGAT TCTTGTGTTTTACAGTGGTATGACTTATTAAACTTAAGATATCGATTAAAATTATGTCAT AACTTCACAACTATAAATATTGGAGTGGAGGAACTTTGCAGAAAGTCTATATATGTTTAT GATAGAAATTCAATGTCATCGTGATTCACCATGATACAATTGAATATTTACTACTTAATA AATTGTGTATGTCAAAAAAACGAAGTAATACTTCTATTTCATCATAACGTGAGCAACCTC GTCACCCGGAATGGATAGCCATAGCTGAAAAAACGCACACAAGGATGTTCAAGCTAAGCT ACTAGACTAGTCAAACATGCTTCTCATATACTTTTGATTCTTCCATTTAAGCTTTAGGCC AAGCGACTTCATTATTATCATCATAAGTCATAAAATCACACTGAGATTCAGCATCAGTGC ATCTTTTACTTTTAGTAGCCCATGAATTAATATCATCTATTTCTGATAATGCTAATACAC CAGCAGTTTCAATAATAGGACCTAAAAAAGAAGAAGCTGTAAAAGATTTCAAAAGATATT CTGTTATTTCTATATCTAGTTCTGCTTTTAAAACAAGTACGTTCGTGCGTGGCTGATACG AAATCTTGTTGAGTTTGCTTGTCCACAGAAAAGTGTCACGCACGCCAAAAAGCACAATTC TAGATAAATTTAAAGTACTTAATGGCTTACATAAGAAAATCATTGAAAAAGATGACAGCA AATATCTAAAAACATATATTAAACAGTTAATGTTTAGAAGATGGAACATGTTCAACGAAA CCTAAAGATGAGACTTAATTCGTTTTCAGTTAGTAATTTTATGGTTTTTTTTCTTTTTGT CCTTGTCTCATGTCGTTGTGTGAGAATTACTGAACCGAGCTTAGAGACCATAGAAACAGA TGCGACAATTCGCGATAATTCTTCATCAATTGCAGGTAAATTGTTTGACAGATTTGTCGT CATATGGCTAGAAAATACCAATGAGAAGACAGCTTCTGCTGACGCAGATTTGCGTTGGTT GGCCGAACGAGGGATTACGTTAACCAATTATTGGGCATTGACCCATCCGTCAGAACCAAA CTACATTGCGTCGGTAAGTGGTGATACTTTTGGCTTGGATAAAGATTCCTTTATAACAAT TCCTAGTAATATATCCACTGTAGTTGATTTGTTAGAGACTGAAAATATTACATGGGGTGA ATATCAAGAAGATCTTCCTTATTCTGGATTTCAAGGTCTCACTTTTTCAAGCCACGATAA TTCTGCTAAGGGTTACGTTAGAAAACATAATCCTTTGATATCATTCGACTCGATTACGAA TAATTCATCAAGACTATCAAAAATCAAGAACTTTACAGAATTTCATAACGATTTAGGTCG ACACGAATTGCCAAGTTGGATGTTTATTGCACCCAATATGATGAACGATGGCCATGATTC AAATATAGAAACGGCAGGTCGCTGGTGCAGAAAATTCGTGGAGCCATTGTTTGATAATGA ATACTTTATATCTAAGACACTAATGCTTATAACTTTTGATGAAAATGAATCCTACAGTGA AGCAAATAAAGTCTGGGCATTATTATTAGGAGGGGTTATTGACAAATCGCACCTCAATAC TAGTGATAATACATACTACACCCATTACTCGGAATTATCGACAGTTGAAAATAATTGGGA TTTATGTAACTTGGGAAGAAATGATACAAATAATAATGGAAATGCTAATGTCTTCAAAGT TCTTGCGGAAAAGTCAGGTTATACAAATAGATACGTTGATACAGTAAACCAATACTTCAA TAAGCCAATTCGTGGTTACTGGAGTGGACATAAAATTCTCCCAGGAATTAACTGTTCGGC TATTGGTACCAGTGATAAAGGTGTATTAATCAAGATCAAGAATACCTGGTGTAATGTTCG AGACAGAGTAAATTCGTCCCGAACTTCTACTGCTCCCTTGAGTCGCAGCCACAATGAATA TGTTGTAGGTATGGTTTTATCGTTTAGTTTTATTTTTATTTATTTATACTGAAGAAGTAT TTATGTTAATACATATGTTGATATTTCGAGTTTTGATTAAATCAGTAATTGACGGAATGG AAAACATAAGCGGTGTTTTGTTCATGAGTTAGGTTTCTATTAGTTTTAATACGTCGAAAT TGCGTAATGAGGATGATGCTGAAGATAAACAGAATATTTATACTGAATTCGCAAGAATAG AACATAAAAATGATAAAGACGTAAATTTAGCAACTATTTCTGTTAAATAGTTTTATTGCT ATATCATTGAATATAATTCTCAAAGTAAAGTCCAACTTGTAGTTTATATGAG
Coding sequence
>DEHA2F27346g.cds ATGGAACATGTTCAACGAAACCTAAAGATGAGACTTAATTCGTTTTCAGTTAGTAATTTT ATGGTTTTTTTTCTTTTTGTCCTTGTCTCATGTCGTTGTGTGAGAATTACTGAACCGAGC TTAGAGACCATAGAAACAGATGCGACAATTCGCGATAATTCTTCATCAATTGCAGGTAAA TTGTTTGACAGATTTGTCGTCATATGGCTAGAAAATACCAATGAGAAGACAGCTTCTGCT GACGCAGATTTGCGTTGGTTGGCCGAACGAGGGATTACGTTAACCAATTATTGGGCATTG ACCCATCCGTCAGAACCAAACTACATTGCGTCGGTAAGTGGTGATACTTTTGGCTTGGAT AAAGATTCCTTTATAACAATTCCTAGTAATATATCCACTGTAGTTGATTTGTTAGAGACT GAAAATATTACATGGGGTGAATATCAAGAAGATCTTCCTTATTCTGGATTTCAAGGTCTC ACTTTTTCAAGCCACGATAATTCTGCTAAGGGTTACGTTAGAAAACATAATCCTTTGATA TCATTCGACTCGATTACGAATAATTCATCAAGACTATCAAAAATCAAGAACTTTACAGAA TTTCATAACGATTTAGGTCGACACGAATTGCCAAGTTGGATGTTTATTGCACCCAATATG ATGAACGATGGCCATGATTCAAATATAGAAACGGCAGGTCGCTGGTGCAGAAAATTCGTG GAGCCATTGTTTGATAATGAATACTTTATATCTAAGACACTAATGCTTATAACTTTTGAT GAAAATGAATCCTACAGTGAAGCAAATAAAGTCTGGGCATTATTATTAGGAGGGGTTATT GACAAATCGCACCTCAATACTAGTGATAATACATACTACACCCATTACTCGGAATTATCG ACAGTTGAAAATAATTGGGATTTATGTAACTTGGGAAGAAATGATACAAATAATAATGGA AATGCTAATGTCTTCAAAGTTCTTGCGGAAAAGTCAGGTTATACAAATAGATACGTTGAT ACAGTAAACCAATACTTCAATAAGCCAATTCGTGGTTACTGGAGTGGACATAAAATTCTC CCAGGAATTAACTGTTCGGCTATTGGTACCAGTGATAAAGGTGTATTAATCAAGATCAAG AATACCTGGTGTAATGTTCGAGACAGAGTAAATTCGTCCCGAACTTCTACTGCTCCCTTG AGTCGCAGCCACAATGAATATGTTGTAGGTATGGTTTTATCGTTTAGTTTTATTTTTATT TATTTATACTGA
Predicted translation product
>DEHA2F27346g.aa MEHVQRNLKMRLNSFSVSNFMVFFLFVLVSCRCVRITEPSLETIETDATIRDNSSSIAGK LFDRFVVIWLENTNEKTASADADLRWLAERGITLTNYWALTHPSEPNYIASVSGDTFGLD KDSFITIPSNISTVVDLLETENITWGEYQEDLPYSGFQGLTFSSHDNSAKGYVRKHNPLI SFDSITNNSSRLSKIKNFTEFHNDLGRHELPSWMFIAPNMMNDGHDSNIETAGRWCRKFV EPLFDNEYFISKTLMLITFDENESYSEANKVWALLLGGVIDKSHLNTSDNTYYTHYSELS TVENNWDLCNLGRNDTNNNGNANVFKVLAEKSGYTNRYVDTVNQYFNKPIRGYWSGHKIL PGINCSAIGTSDKGVLIKIKNTWCNVRDRVNSSRTSTAPLSRSHNEYVVGMVLSFSFIFI YLY*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/DEHA/DEHA2F27346p