HomeDEHA2F24926g
similar to uniprot|Q9UVB9 Pichia ciferrii LCB2 Serine palmitoyl Co-A transferase subunit 2
Element type: CDS
Element length: 1674 nucleotides,
on anti-sense strand of
Deha2F: complement(2067026..2068699).
Other names:
DEHA-CDS1904.1
DEHA-IPF6062
DEHA0F26444g
Coding sequence: 558 codons.
Element length: 1674 nucleotides,
on anti-sense strand of
Deha2F: complement(2067026..2068699).
Other names:
DEHA-CDS1904.1
DEHA-IPF6062
DEHA0F26444g
Coding sequence: 558 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein DEHA2F24926p 
Protein domain map
Database cross references:
InterPro: IPR004839
InterPro: IPR015421
InterPro: IPR015422
UniProtKB/TrEMBL: Q6BK48
InterPro: IPR004839
InterPro: IPR015421
InterPro: IPR015422
UniProtKB/TrEMBL: Q6BK48
Gene Ontology terms
None available yet
Sequence data
>DEHA2F24926g.nt ACGGAGTGTCATTTTTTGACGTCAATGACAAGATAGGCATTTCGTCACCCGAACTCCACG CTCTAGTTCCCGGAAACAAGACTATGATGCAGGTCATCATGAACGGTCTAGTTCCAAACG TCGCCAACTCAAATTTCACGTTTATTGCACCCAAAGAACTGCTCACTCCCCATGCCCGCA CCCTTCTCGGCAAATTCGACGACATTCTTGCGGCCCATGCTAACGACAGCTTCTCTGACT TGTCCGTCACCAACCAGAAGCTTACATTGTTCCTTAGGGCCGTCATAAAAAATCCCGAAA TTCTCATTCTCGACGAAGCCTTCTCTTGCATGGACGAAGAACAAATTATGGTCAGATGCC ACGACATCGTAGAAAACGACTTGAAAGATACTACAGTTCTAGCAATAGCCCACATAGACT GGGAGATCCCCGCCTGCGACTACGTTTTGAAGCTACATGGTGATGAACTGAGATCATACG GAATCCTGAAGTATGGTTGATCCGAGTTAGTACTAGTAGTGCTTAGGTAAAAACTTACCC CTATACTCTTTTTCCGGCGATTTTAACCCTAAACTTGCACATTTTTTTATGACACTAGTT GCCAATGCAATAGTATACCAATCTCGTGTGATCAAACTTCTTCTCTACATACAAATATAC AATATATTCATGAATTTACTGTTTTGTTTGCTCTAGACTAAAACTTTTCACAACCAAACG CGCTAAATTATAACCGTTTTTTTTTGGTTTTGTGTAACTTATCGACTTTTTGTTTTCTAT TCAGTTAGTTCGTTTTCAACAGTCGTTAGTATACTAGAGAACCACGGTTAATAGGGACAA TCATTAGGTATAACAAGCATCTGTATTGAATAGTATCAATAGGAACGAATACTCAAAATT ACCAGTGATACCAGCAAGAAGTCCGTATCATTTGAACAACCAACTTGGGGATTAGGAAAA TTATAACGCAGGCATATTATTCATCAAAGCACAAGATAATATGTCTACCAAAATACCAAC CGCAGCCAAAGATACTAGGTCAGAGGAAGAACAAGCCGAATTAGAATATGGAAGACTTAC TTCGAAGGACTATTTATACGTTTCTGAACACCCAGTGGGAGAGCCATTACCCACGCCCAT CGAAGACGAACCGCCATACATAATCTATATTACGACGTATATCAGTTATCTTCTTTTGAT TCTCATTGGACACATTCGGGACTTCTTTGGAAAGATATTCAAGCCACGAGACTATGCACA TTTGGTGGAGAAAGACGGGTATGGCCCGTGGTACGACGGGTTTGAAAGTTTCTACGTACG TCGGTTGAAATTGAGAATCGACGACTGTTTTGCCAGACCTATTCACGGAGCACCAGGGCG TTACATCAAGTGTTTCAACCGTGATAGAACCGTTGTATACGACGAATATACGTATCCTGG AACATCGACCGAATGTTTAAATTTATCATCTTACAACTACTTGGGGTTTGCGCAATCCAA AGGTTTGTGTACCGACCATGCTTTAAAGGCCGTTGAAGATTACGGTACCTCTGGGTGTTC TCCAAGGCTGCTTAGTGGTACAACTGATTTGCATAAAGAATGTGAACGTGTGATTGCTGA TTTTGTTTACCAGGAGGACGCCATCATCGTCAGTCAGGGTTATGGTACTAACGCAAATTT ATTTGCATCTTTGGCAGATGCCAACAGTTTGATTATAAGTGACGAATTAAACCATGCGTC TATTAGATTCGGTATCAGGTTGTCGGGTGCATCCGTAAAAGTCTTCAAGCATAATGATAT GAGAGACTTGGAAAAGTTATTGAGAAACTCTATTGCCCAGGGTCAACCAAGAACTCATCG TGCATGGAAGAAAATCATTATTGCCGTCGAAGGGTTATACTCTATGGAAGGTAATATGTG TAACTTACCACAAATCGTAGAATTGAAAGAGAAATACAAATGCTATTTATTTGTGGATGA AGCTCATTCTATTGGTGCTTTAGGTCCAGAAGGTAGAGGCATATGTGATTATTTCTCTGT CGACCTGCGTAGAATTGACTTATTAATGGGTACATTTACCAAATCTTTCGGTGCTACAGG TGGATACATTGCTGGCCCAAAGGCATTAATAAATAAGTTGAGAATTAATTACATTACCAA CAATTACTCCGAATGTGTTCCTCCCCCAGTCTTAGGCCAGATTATTTCTTCATTGAGTGT CATCGATGGTAGCTTGAACCCAGGTGAAGGTTCGGAAAGATTAAAGAGAATTGCTTTCAA CTCTCGCTATTTAAGATTAGGATTAAAGAAATTGGGCTTTATTGTTTACGGTGCAGATGA CTCGCCAGTTATCCCATTGTTATTATTCTTACCTGGTAAAATGCCTGCTGTATCGAGATT CTTGTATTCTATGAACATTGCTGTCGTGGTTGTCAGTTACCCTGCCACCCCGTTAAGTAG TGCTAGAGTTAGATTATGTGTCAGTTCCGCCTTAACCAAAGAAGATCTTGATTACGTTTT AACTAAATTTAATGAAGTTGGTGACATGGTTTATTTGAAATTTAGCAGTGGTATTGCTGG TGGATCTAAAATCCCAGGACAACCTCCTAGGTGGTCCATCGAAGATGTGATCGCTACTAA TGTCGAAGATTGCAAAATGGCTAGTATGGCATAATCCTTCACACTTCTTAGACCTTAATT CTTCATGTTTTTCTTCTCTAAATATTAATATCAGCTTCTATTTCAGTCGTATATAATTTA ATTACTTAATATAATAATAGCTTTCTTATACTACTTTATTTCATCACAATACATTTCATC ACAATACCCTCTCACTCCATAAAATATTTTCTCTTCAATATCTCTTCCTTTATATATCCC TTTCTCTAACTCTTCATAATAGTCCTTCTTTCATTTATTCACTAATTCATCATTTTCATT ATCTCATATCATTTTCTCATCAAACATTAATCTC
>DEHA2F24926g.cds ATGTCTACCAAAATACCAACCGCAGCCAAAGATACTAGGTCAGAGGAAGAACAAGCCGAA TTAGAATATGGAAGACTTACTTCGAAGGACTATTTATACGTTTCTGAACACCCAGTGGGA GAGCCATTACCCACGCCCATCGAAGACGAACCGCCATACATAATCTATATTACGACGTAT ATCAGTTATCTTCTTTTGATTCTCATTGGACACATTCGGGACTTCTTTGGAAAGATATTC AAGCCACGAGACTATGCACATTTGGTGGAGAAAGACGGGTATGGCCCGTGGTACGACGGG TTTGAAAGTTTCTACGTACGTCGGTTGAAATTGAGAATCGACGACTGTTTTGCCAGACCT ATTCACGGAGCACCAGGGCGTTACATCAAGTGTTTCAACCGTGATAGAACCGTTGTATAC GACGAATATACGTATCCTGGAACATCGACCGAATGTTTAAATTTATCATCTTACAACTAC TTGGGGTTTGCGCAATCCAAAGGTTTGTGTACCGACCATGCTTTAAAGGCCGTTGAAGAT TACGGTACCTCTGGGTGTTCTCCAAGGCTGCTTAGTGGTACAACTGATTTGCATAAAGAA TGTGAACGTGTGATTGCTGATTTTGTTTACCAGGAGGACGCCATCATCGTCAGTCAGGGT TATGGTACTAACGCAAATTTATTTGCATCTTTGGCAGATGCCAACAGTTTGATTATAAGT GACGAATTAAACCATGCGTCTATTAGATTCGGTATCAGGTTGTCGGGTGCATCCGTAAAA GTCTTCAAGCATAATGATATGAGAGACTTGGAAAAGTTATTGAGAAACTCTATTGCCCAG GGTCAACCAAGAACTCATCGTGCATGGAAGAAAATCATTATTGCCGTCGAAGGGTTATAC TCTATGGAAGGTAATATGTGTAACTTACCACAAATCGTAGAATTGAAAGAGAAATACAAA TGCTATTTATTTGTGGATGAAGCTCATTCTATTGGTGCTTTAGGTCCAGAAGGTAGAGGC ATATGTGATTATTTCTCTGTCGACCTGCGTAGAATTGACTTATTAATGGGTACATTTACC AAATCTTTCGGTGCTACAGGTGGATACATTGCTGGCCCAAAGGCATTAATAAATAAGTTG AGAATTAATTACATTACCAACAATTACTCCGAATGTGTTCCTCCCCCAGTCTTAGGCCAG ATTATTTCTTCATTGAGTGTCATCGATGGTAGCTTGAACCCAGGTGAAGGTTCGGAAAGA TTAAAGAGAATTGCTTTCAACTCTCGCTATTTAAGATTAGGATTAAAGAAATTGGGCTTT ATTGTTTACGGTGCAGATGACTCGCCAGTTATCCCATTGTTATTATTCTTACCTGGTAAA ATGCCTGCTGTATCGAGATTCTTGTATTCTATGAACATTGCTGTCGTGGTTGTCAGTTAC CCTGCCACCCCGTTAAGTAGTGCTAGAGTTAGATTATGTGTCAGTTCCGCCTTAACCAAA GAAGATCTTGATTACGTTTTAACTAAATTTAATGAAGTTGGTGACATGGTTTATTTGAAA TTTAGCAGTGGTATTGCTGGTGGATCTAAAATCCCAGGACAACCTCCTAGGTGGTCCATC GAAGATGTGATCGCTACTAATGTCGAAGATTGCAAAATGGCTAGTATGGCATAA
>DEHA2F24926g.aa MSTKIPTAAKDTRSEEEQAELEYGRLTSKDYLYVSEHPVGEPLPTPIEDEPPYIIYITTY ISYLLLILIGHIRDFFGKIFKPRDYAHLVEKDGYGPWYDGFESFYVRRLKLRIDDCFARP IHGAPGRYIKCFNRDRTVVYDEYTYPGTSTECLNLSSYNYLGFAQSKGLCTDHALKAVED YGTSGCSPRLLSGTTDLHKECERVIADFVYQEDAIIVSQGYGTNANLFASLADANSLIIS DELNHASIRFGIRLSGASVKVFKHNDMRDLEKLLRNSIAQGQPRTHRAWKKIIIAVEGLY SMEGNMCNLPQIVELKEKYKCYLFVDEAHSIGALGPEGRGICDYFSVDLRRIDLLMGTFT KSFGATGGYIAGPKALINKLRINYITNNYSECVPPPVLGQIISSLSVIDGSLNPGEGSER LKRIAFNSRYLRLGLKKLGFIVYGADDSPVIPLLLFLPGKMPAVSRFLYSMNIAVVVVSY PATPLSSARVRLCVSSALTKEDLDYVLTKFNEVGDMVYLKFSSGIAGGSKIPGQPPRWSI EDVIATNVEDCKMASMA*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/DEHA/DEHA2F24926p